TCONS_00009410 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009410
Unique NameTCONS_00009410
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1287

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009410 ID=TCONS_00009410|Name=TCONS_00009410|organism=Clytia hemisphaerica|type=transcript|length=1287bp
GAGGGAATGAAAACTctgtaataaattttttatggtcaaaTGTAAATATT
CTCTTTaatatttagaaaatcaaaataaaacatcataAAATGAAGCCACA
AACTCCACCATATAAGATCATCGAGGCTGTTGGTTTAGTTTTCATCATTT
TGGGTCTGTTTACATGTGTAACGTTTTTGTTCCATTCAGACTATGCTTAT
TTCGGACCAGCAATGATCGGTCTTGGTATTTGCCTAATGTGTGGAGGGCG
TTATATGTATTATCGTTTATATAGCAAGCTGGAGAATAGTTATGACCGCC
ATGTTGACGACGTAGAGGCTCCTGTTAGCTCTGAGGAACAACAACAAAGA
ACTTCAATAAATTCTCAAAATGTGTCTGTAGCCTACAGTACGAATGGTGG
ATACGCAGCATCGCAACAAGGTGTGTAGATAAAGatgtTAGAGAGGGATC
AAATGTGATTTAGAAGTAGAATGCCACCCACAGATGTAAACTTCCTGCGA
AAGGCTTGACCGTGTTGTCATTTGCAATTTTGTCCAAAGTTAAGTCTGTT
TTAAGACTTTGATTGGTTGGAATGTACTAGTTATCCAGGCAGGCACACGA
CGCGGCAATTCAAAGTTCTACTCACGTTATATGGATATTATAGTCGCGAC
ATGGATGTTGTtaagatgttttgttttgtcttGGTTGCCCTCGGAAAGAC
TCAGTAATTTTTGGATACCTATAATAGATAGAAAACACCAAACACCCCGG
AGCTATTCCCTGATAATTGATATTTGTTCGATTTTAGTAATTTCTCGTTT
CAAAAACTAAAACGTTCATTTTAAAACCATCAACAATTAGGTTTCGTAAG
AGCGGTAATGATACACATTTTTGCCAAAAACTATATTCGCCATAAAAAGT
TAAATGTTTAAAGGacatttttgctaaatttgtaTCATAATTTTCAATAC
TTTGACAGAGCCTTCGCTAGGGCGACTTTGTTTTAAATTCACAGAATTAA
AGTGTTCCAAAACCTTGGGCATAAATGTTAAGCTTACTCCTAAAGTAAAG
GTGTTTTTATATAGGACATTTCTTGGGATGGGGGTCAAGTATTTTATAca
tagtaattttttttaaatgacaacTATGAAATTTTAGAGACGTAGAAATa
tgaattaatttcaaaatagaataaaaatgaaaataaaaataaaattagtt
aCATACCTGTTATTTTTCCTTacttttcttgtttttgttcttcATGTAAC
ACGACCATTATTCATTTCCATTTTATTGTCAACTAAT
Run BLAST on NCBI

transcript from alignment at sc0000093:460301..463749-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009410 ID=TCONS_00009410|Name=TCONS_00009410|organism=Clytia hemisphaerica|type=transcript|length=3449bp|location=Sequence derived from alignment at sc0000093:460301..463749- (Clytia hemisphaerica)
GAGGGAATGAAAACTCTGTAATAAATTTTTTATGGTCAAATGTAAATATT
CTCTTTAATATTTAGAAAATCAAAATAAAACATCATAAAATGAAGCCACA
AACTCCACCATATAAGATCATCGAGGCTGTTGGTTTAGTTTTCATCATTT
TGGGTCTGTTTACATGTGTAACGTTTTTGTTCCATTCAGACTATGCTTAT
TTCGGACCAGCAATGATCGGTCTTGGTATTTGCCTAATGTGTGGAGGGCG
TTATATGTATTATCGTTTATATAGCAAGCTGGAGAATAGTTATGACCGCC
ATGTTGACGACGTAGAGGCTCCTGTTAGCTCTGAGGAACAACAACAAAGA
ACTTCAATAAATTCTCAAAATGTGTCTGTAGCCTACAGTACGAATGGTGG
ATACGCAGCATCGCAACAAGGTGTGTAGATAAAGGTTTGTTTCTTACTCA
AGTTTTTTTTCTCTTGTTTTTATTTTTAGGTACACGTTTTTTTATAAGAA
CATTCAAAATTTTTGAAGCCTTCGGATGTTCTTAACTTTTTGAGTTTCAA
GCCTGAAAATGTTCTTAACTTGTTCTTAATATCTTTGCAACCGAACCCTT
ATGTTCTTATAGTTTGTTCTTATATTAAAAAACGTGTAACTTATAATTTC
TTTGTGAGTCAAAACTGCTTTTGCGAGGCAAATAAAATGTAAAAATTTGC
AATTCTCATGAATTTAACGAATTATCCCTTTATTTTAAGGATAAAACCCC
GGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCCCCTTACAGTGCATTTTAAACATGTTG
GAAAAGGTACCCTTAGGACCCGCACATACCCGTCGGGCCTTTTGCCCAGC
TGCCCCCCCCCCCGGGATAAAACCAAAAACTACCGCTTTAAAAATGCACA
GATTTGTGAAAATAAGTAAACCTTTCAGCTGATGAAAGGTTGTTATATTA
TTCTAAAATCCCTAGAACTTCACTTTTATGTTAAAAACCTTGAGCTGAGC
TCGCCCCCGCTTTAAATATTTAAGTTTTATTAGAGCCTTTACAGGGGGGG
GTTGTACTTTTACGGTGTGACGGGATTGGGCCTTTTTTAGTACGGTATTA
CGGGATTTGACGAAAAAAAGACGGGAAAACGGTATTTTAAAATCAGACGG
TGACGGTTGTACAAACCGCTGTGACGGTGTTATTATTTTTTTCACTTTTC
GAGATTCCGGGATTCAGCAAAAATTATGACGGGAAAACGGTATTTTAAAA
TTAGACGGTGACGGTTGTACAAACCGCTGTGACGGTGTTATTATTTTTTT
CACTTTTCGAGATTCCGGGATTCAGCAAAAATTTTGGCGGGAAAACGGTT
TTTCGAACCCCCCCCCCCCTTTACAGTCAGTTGAAAACCGGCTGCTTTCG
CAATTTAGGCTATACTAGGTATATATTATGCAATGAATAGTTAGTAGGTA
AATTAGTATAGAACTTTGATGAAAACAGCTCTATTGGAAGGCAAACTTTC
TCATAAAAGTCACGCGGAAATCACGAGAAAGTCTGCGCTGTGATACATAG
TTAAACGAAAAACTAGAAGTTCATATTTCAAATATTGCAAAACCTCCGAA
ATCGCATATCACAGTATCTTTCTTTGTAACAGAAAGTGCAAAAATTTCTG
TTTGACCTCATTTCACGAAAAGACTCTTTTTCCGCGCGATCTAAAAATCC
TTAAAAATGCGGGTCCTAATCTATACTTAAGGGCTACATACACTACACAA
TATATTGCCAGGTAATATATTGGCAATTTATTTATACAGACAATATATTG
TTAAGGTGTCCGCAATATATTGTCAGCTCGATTTGCAATATTCCAACAAT
ATAGAGGGATTTTTAAAGAAAAAATTTCTTTTTATAATAGAGTACCTGAT
GTTTACTTTGTACATTACGGTCCGAAAACTATTTTGTTGAATATTTCTCG
TCAATATATTGTGTTTATATATTGTCCTTTTTAGACTAATAGTTTTGTTA
GAAGAAGAGAAGTTGATAAAAATTGCTACGGCTTCAACAATGCAGACTCA
AAAAGAACACCAAAAAATGAATCCAAAATTTTGACGAGTTGTTGTGTTGT
CGAGTTTTGTTAATTAGAAATTGGACTGTATTTAGGAAGTGTTCGAGCTT
CATCTTTCTTTACTAAAAATTCTTATTCATTGTTTTCTTTTTTTAGATGT
TAGAGAGGGATCAAATGTGATTTAGAAGTAGAATGCCACCCACAGATGTA
AACTTCCTGCGAAAGGCTTGACCGTGTTGTCATTTGCAATTTTGTCCAAA
GTTAAGTCTGTTTTAAGACTTTGATTGGTTGGAATGTACTAGTTATCCAG
GCAGGCACACGACGCGGCAATTCAAAGTTCTACTCACGTTATATGGATAT
TATAGTCGCGACATGGATGTTGTTAAGATGTTTTGTTTTGTCTTGGTTGC
CCTCGGAAAGACTCAGTAATTTTTGGATACCTATAATAGATAGAAAACAC
CAAACACCCCGGAGCTATTCCCTGATAATTGATATTTGTTCGATTTTAGT
AATTTCTCGTTTCAAAAACTAAAACGTTCATTTTAAAACCATCAACAATT
AGGTTTCGTAAGAGCGGTAATGATACACATTTTTGCCAAAAACTATATTC
GCCATAAAAAGTTAAATGTTTAAAGGACATTTTTGCTAAATTTGTATCAT
AATTTTCAATACTTTGACAGAGCCTTCGCTAGGGCGACTTTGTTTTAAAT
TCACAGAATTAAAGTGTTCCAAAACCTTGGGCATAAATGTTAAGCTTACT
CCTAAAGTAAAGGTGTTTTTATATAGGACATTTCTTGGGATGGGGGTCAA
GTATTTTATACATAGTAATTTTTTTTAAATGACAACTATGAAATTTTAGA
GACGTAGAAATATGAATTAATTTCAAAATAGAATAAAAATGAAAATAAAA
ATAAAATTAGTTACATACCTGTTATTTTTCCTTACTTTTCTTGTTTTTGT
TCTTCATGTAACACGACCATTATTCATTTCCATTTTATTGTCAACTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005270XLOC_005270Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009410-exon-sc0000093-1575043694:463316..463749TCONS_00009410-exon-sc0000093-1575043694:463316..463749Clytia hemisphaericaexon
TCONS_00009410-exon-sc0000093-1575043694:460301..461153TCONS_00009410-exon-sc0000093-1575043694:460301..461153Clytia hemisphaericaexon
TCONS_00009410-exon-sc0000093-1510915933:463316..463749TCONS_00009410-exon-sc0000093-1510915933:463316..463749Clytia hemisphaericaexon
TCONS_00009410-exon-sc0000093-1510915933:460301..461153TCONS_00009410-exon-sc0000093-1510915933:460301..461153Clytia hemisphaericaexon
TCONS_00009410-exon-sc0000093-1491911889:463316..463749TCONS_00009410-exon-sc0000093-1491911889:463316..463749Clytia hemisphaericaexon
TCONS_00009410-exon-sc0000093-1491911889:460301..461153TCONS_00009410-exon-sc0000093-1491911889:460301..461153Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000093supercontigsc0000093:460301..463749 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.150992	0.623003	5.98323	8.39702	4.12327	4.54285	5.09653	2.32284	2.85381	2.60996	6.19204	6.18334	3.88666	7.25759	2.244	3.38184	4.6911	4.47604	5.69856	4.87743	3.38135	1.66988	0.626438	0.178396	15.2465	13.8758
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009410 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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