TCONS_00009427 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009427
Unique NameTCONS_00009427
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length663

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009427 ID=TCONS_00009427|Name=TCONS_00009427|organism=Clytia hemisphaerica|type=transcript|length=663bp
ATTCCAGGATAGGAAAACAACTGCGCTTGCCTGACTCTACCAGTTCATAC
TCTTGACATACAGTTTTGTTGGCGTATAGTAAATACACTCGAACGACTCG
AGTGGTCGAACCTGACAAGTATTAGCAACCACATCATAGAGCTAGGCGCA
TATCTCCCCAGACTCTTGTATTAGAGATGATACCCACTTCCTCACACATA
GCATGGATTAACCCGGGTGAAGGTACGTTCACTTGCCAGGTAtggcaaga
aaaaaattaaacaacgttcagtatttttatttaattacaATTTAGCAGTC
ACCAGAAGTGACTGGCGGATTTAAggcaatagagcaagtacgtcggaaaa
cATACGAAAGAGTGCAGCGCTCGTtacagacaatgaaattacaattgcAA
ATCTCTTCCTCTGGTATGCTCGacgtggtctaaaaccgcctctGACCAGA
AGTGACCAAAAATTAACAACCATCCATGAGGAAAATAGCTATTCACAGAT
GAAAATAACCACTCACGAAATAGACGTAAGATTAGCCAAAAAAAGCTGCA
AAAGAGAATAACTCAATGACTTGTCTTTCTAAACCATCTGCTATTACACC
ACCATCTCCACGTTTAAGGTCCAAGGTGTCTTTTCCTGACATGCTCTTAA
AGCGAGAGCACTA
Run BLAST on NCBI

transcript from alignment at sc0000093:322321..322983

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009427 ID=TCONS_00009427|Name=TCONS_00009427|organism=Clytia hemisphaerica|type=transcript|length=663bp|location=Sequence derived from alignment at sc0000093:322321..322983 (Clytia hemisphaerica)
TAGTGCTCTCGCTTTAAGAGCATGTCAGGAAAAGACACCTTGGACCTTAA
ACGTGGAGATGGTGGTGTAATAGCAGATGGTTTAGAAAGACAAGTCATTG
AGTTATTCTCTTTTGCAGCTTTTTTTGGCTAATCTTACGTCTATTTCGTG
AGTGGTTATTTTCATCTGTGAATAGCTATTTTCCTCATGGATGGTTGTTA
ATTTTTGGTCACTTCTGGTCagaggcggttttagaccacgtCGAGCATAC
CAGAGGAAGAGATTTgcaattgtaatttcattgtctgtaACGAGCGCTGC
ACTCTTTCGTATgttttccgacgtacttgctctattgccTTAAATCCGCC
AGTCACTTCTGGTGACTGCTAAATtgtaattaaataaaaatactgaacgt
tgtttaatttttttcttgccaTACCTGGCAAGTGAACGTACCTTCACCCG
GGTTAATCCATGCTATGTGTGAGGAAGTGGGTATCATCTCTAATACAAGA
GTCTGGGGAGATATGCGCCTAGCTCTATGATGTGGTTGCTAATACTTGTC
AGGTTCGACCACTCGAGTCGTTCGAGTGTATTTACTATACGCCAACAAAA
CTGTATGTCAAGAGTATGAACTGGTAGAGTCAGGCAAGCGCAGTTGTTTT
CCTATCCTGGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005283XLOC_005283Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009427-exon-sc0000093-1491911889:322321..322983TCONS_00009427-exon-sc0000093-1491911889:322321..322983Clytia hemisphaericaexon
TCONS_00009427-exon-sc0000093-1510915933:322321..322983TCONS_00009427-exon-sc0000093-1510915933:322321..322983Clytia hemisphaericaexon
TCONS_00009427-exon-sc0000093-1575043694:322321..322983TCONS_00009427-exon-sc0000093-1575043694:322321..322983Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000093supercontigsc0000093:322321..322983 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (2.04117 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.15629	0	0	0	0.210765	0.333099	0.100467	0.376226	0.0658511	0	0.0791712	0	0	0	2.04117	0.714289	0	0.120255	0.166139	0.173853	0	0	0	0	0	0	0.107152	0.228711	0.173469	0.0883689
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009427 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350400450500550600650Sequence
Match NameE-valueIdentityDescription
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