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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009196 ID=TCONS_00009196|Name=TCONS_00009196|organism=Clytia hemisphaerica|type=transcript|length=1132bp
TCCTTAGTTTTCATTCATGACTTAAGAAAATTTTGTGGTTTTTTGATTGC
ACAGTGAATCCTTGTTATTACTTCATTCTCAAGCCTATTTTTCTCtactt
tgattttcatttttctttttcttttcatttttatattgaCCATCAAACTG
GACACCTGGTGAAGCAATGGGAAATAATTTCTAAGACAAGAAAGACAGAA
GACTTGCAGACACAATGAGTCATTCAAGTGCCATGGAGGCTTCAAAATCA
GCCAAGTTATATCAACACAAAACGGAAGGTGTTCAAAAGAAATATGGTAT
CCAATTGTTGGAATATTTACCGGTGAAACATGGTGACATTATCGGGGAAA
TCGGTTGTGGATCGGGAAACTTGGCTGCCATTCTCGCAAGATTGGTCGGC
GAAGAGGGAAGGATAATCGCACTTGACCCAAACATGGAGAGGATCAAGGT
AGCGAAAAAAGAATACGGTAATTTAAAGAACATCAAATTCATTTCTTGTA
AGAGTGTCCACTTACCTATCCTCAAGCAAAAATGTTACGATTCTTTCATT
TCAAATGCTGTTTTACATTGGATTCCTACAGAGGAAAAAATAATCACTTT
CCGACGTATCTTGTCCGTCCTAAAACCGGGTGGCTATTTTGTCGGAAACA
TCTCATTCAATCGGTCAACTAATATGCAATTAGCGACAGCGATGCTAACA
CTTGAGGAGCAGGAAGAAATCAGTGGGTTTTATTACCGTGAAAATCCAGA
GAAGCTAAAGACTCTTCTATTAGATGCTGGCTTTGAAATTGTAGAATATA
AGTACCGTTATTCAGAGATCAATCTAGGTACAGTGAGTAGTTTTCTAGAC
TGGATCACAGCCACATATTATGGGAAGTTTGACTTCAAGGCTGCATATAA
ACACGTGAAAAATGATATAGACTTTATGAGACTTCCGAGTGGAGATGTCA
AACACACGAGCGAAGGAGCTTTGTTTGTTTGCCGAAAACCGCTGTTAATA
GAGTGATTAACATTTTATAATTTGGTATTTTGTAGATATGTGATATTTGT
AGTTTATAGCTAGAAACAGAATTTTATTAGTCAACTTGAATAAGGAAAGT
TGAAATGAAGAACACTGGTTCACTGGTTTAAC Run BLAST on NCBI protein sequence of TCONS_00009196-protein >TCONS_00009196-protein ID=TCONS_00009196-protein|Name=TCONS_00009196-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MSHSSAMEASKSAKLYQHKTEGVQKKYGIQLLEYLPVKHGDIIGEIGCGS
GNLAAILARLVGEEGRIIALDPNMERIKVAKKEYGNLKNIKFISCKSVHL
PILKQKCYDSFISNAVLHWIPTEEKIITFRRILSVLKPGGYFVGNISFNR
STNMQLATAMLTLEEQEEISGFYYRENPEKLKTLLLDAGFEIVEYKYRYS
EINLGTVSSFLDWITATYYGKFDFKAAYKHVKNDIDFMRLPSGDVKHTSE
GALFVCRKPLLIE Run BLAST on NCBI transcript from alignment at sc0000091:337145..340832+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009196 ID=TCONS_00009196|Name=TCONS_00009196|organism=Clytia hemisphaerica|type=transcript|length=3688bp|location=Sequence derived from alignment at sc0000091:337145..340832+ (Clytia hemisphaerica)
TCCTTAGTTTTCATTCATGACTTAAGAAAATTTTGTGGTTTTTTGATTGC
ACAGTGAATCCTTGTTATTACTTCATTCTCAAGCCTATTTTTCTCtactt
tgattttcatttttctttttcttttcatttttatattgaCCATCAAACTG
GACACCTGGTGAAGCAATGGGAAATAATTTCTAAGACAAGAAAGACAGAA
GACTTGCAGACACAATGAGGTATGAGTGCTTACATTTCCTTCACCTTCTg
ttgaaaacttttcaaaatctcatgacaagaacaatttttacaccccttct
cacaaatCTCATAtaagatcatccattctgcgcgTACCAGACTCTGCCCT
AAAAGGGATATGGCGAATGTTACGATCTGACCCGTTTGTTCAGCCAAAGC
ATTCAAAACTACctttctttttgcttgaaacaaaAGCGAAAGTGACTGGG
TGTAATGTTTGTAGTGGATCGGGTGCCATAAATACCCAATACAGACACTC
GATGGAAGTTTGCAACCAGTCGAGTCAGTTCAGAACTCAATCGAGTCAGA
TCAGACTCAATCGAGTCAGTTTTCAGTACTGGACACCGAATGCAGACTAA
CCGGGAAAAATGCCGGTTTAAATCACCGGTTCATTTCGGATTTTTCAGAT
AGTCGGATTATAATTTTAACAACTCTGGTTTGTGGGTTATACACAACTTC
ACTGGATCTGTGAACAAGAGGAAGAATAAGGGAAAGAGAAAAACGTAGAA
AAGAATACAGAACAGAAAAATAAGAAcgaaaagaacattttaaaacatcA
TCAAAGAACATCGACCTATACCCACAATATTGCATTTTGAAGCagggggg
tcttgcagttactccttgacactatgtgcaGTAACTGCAATTTGGGACAT
TTTCTACaaacaccaccacccttgcagttattccatagtgtactaactga
ttttaccctcaaaattggtgtataccacccccaaaaatgccaaatttggc
aattttttcactgaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNactgggtacgtcttat
taacgaccgttcaagagttaaatatctcaatcattttccaagtttgttaa
aatatctttcatgccttgattgaagaaaaaatttcgtgatttttttttga
attttgaaaaaatgttttgaatgtttttgcttccggaatttttaaaaacc
taaaattttaagtaaaaaattgaaaaatgtgctcacttagtacaccatat
cctaccaaaatcgacaattttgggcttaggcaccacccatgttgcagtta
gtccactggtggagtaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNtatataccaccacggtagtaattgtcatagtgtttatataataactgc
atgaccccccccctgtttgAAGGCCATTTGTTTATACAGTATTCTTAACC
TTTTATCGTAGTTAATTTATTTTCCTTCCAGGCTAGAAAATATAATCAAC
AGACCAGTTTGTACACAATCTAGAATACCCGAATAAACCGGAAAAAACCC
GGTGGCTCGGACTAGCTAGTTCTAAACTGACCATATTGATTCTTAACCGA
CCCAATTAGTTTTAAACTCACTCGATTGAGTTCTGAACTGACTCGATTGA
TTCTAAACTGATCCGACCAAGTACTTAACTGGCCCGACCGGGTATTGAAC
TGATCCGATTGGTTGCAAACTTCCGTCGAGTGTCTGAATTGGATATTTAT
GGCACTCATTCCACTCCATAGGTGGGACTCTTCCCCCACTgagaaaattg
gccaaattatCGTCCCCtattggaaaattatactccaattgtATTGCTAC
CGATTATCGTTGCGACTGAGGAATAAGTAATTCTCTAGATTTAATTTCCA
TTGCAATTTGCATTGAGTTTGGTAAGTCGTTTCactatttcaaacttttc
atttcCAGTCATTCAAGTGCCATGGAGGCTTCAAAATCAGCCAAGTTATA
TCAACACAAAACGGAAGGTGTTCAAAAGAAATATGGTATCCAATTGTTGG
AATATTTACCGGTGAAACATGGTGACATTATCGGGGAAATCGGTTGTGGA
TCGGGAAACTTGGCTGCCATTCTCGCAAGATTGGTAAGGGGTTATATGAA
ATATTAGATCTATGTTTTATCATAGATAGAGCGTGGTTAATATTTTAATA
GCGCTTATTAGGCTATTCCAAaggtttttctctttctttgctGCCACATT
CCGCCCTGTAATATTTGAAGCTAAAGGGGaaatgctcaaaaatgttccaa
taaagcTAACATTATAgtctggaagccacttaacccctcaaaatagaaaa
acacaataaaacaaagtggaagtgctgaaactgcaattctcgcctgacct
ttaaattctgaaaaatgttaaaatacccaaaagtgccaatatttTTTAGC
GGTAATTGCAGCTacaatttttcaggtttttgggACCCCTCTATACGGAA
AATATAACTTCCTCAAATCAGAgtgaattttctttctcattttaaCCGTG
CACAATATTAAAACTAGATTCTTAGCCGCTAAAATAGTTCATTATTGGTT
GAAGCTTTTCTTGGACGTGTTCAACATTAGCCAGAAATTGCTTACCAGCG
ACTGTTAGTTCGCAAGAAATTTGCAGTTATTCGGTTTTTCTGTTTCTTAG
GTCGGCGAAGAGGGAAGGATAATCGCACTTGACCCAAACATGGAGAGGAT
CAAGGTAGCGAAAAAAGAATACGGTAATTTAAAGAACATCAAATTCATTT
CTTGTAAGAGTGTCCACTTACCTATCCTCAAGCAAAAATGTTACGATTCT
TTCATTTCAAATGCTGTTTTACATTGGATTCCTACAGAGGAAAAAATAAT
CACTTTCCGACGTATCTTGTCCGTCCTAAAACCGGGTGGCTATTTTGTCG
GAAACATCTCATTCAATCGGTCAACTAATATGCAATTAGCGACAGCGATG
CTAACACTTGAGGAGCAGGAAGAAATCAGTGGGTTTTATTACCGTGAAAA
TCCAGAGAAGCTAAAGACTCTTCTATTAGATGCTGGCTTTGAAATTGTAG
AATATAAGTACCGTTATTCAGAGATCAATCTAGGTACAGTGAGTAGTTTT
CTAGACTGGATCACAGCCACATATTATGGGAAGTTTGACTTCAAGGCTGC
ATATAAACACGTGAAAAATGATATAGACTTTATGAGACTTCCGAGTGGAG
ATGTCAAACACACGAGCGAAGGAGCTTTGTTTGTTTGCCGAAAACCGCTG
TTAATAGAGTGATTAACATTTTATAATTTGGTATTTTGTAGATATGTGAT
ATTTGTAGTTTATAGCTAGAAACAGAATTTTATTAGTCAACTTGAATAAG
GAAAGTTGAAATGAAGAACACTGGTTCACTGGTTTAAC Coding sequence (CDS) from alignment at sc0000091:337145..340832+ >TCONS_00009196 ID=TCONS_00009196|Name=TCONS_00009196|organism=Clytia hemisphaerica|type=CDS|length=2376bp|location=Sequence derived from alignment at sc0000091:337145..340832+ (Clytia hemisphaerica)
ATGAGTCATTCAAGTGCCATGGAGGCTTCAAAATCAGCCAAGTTATATCA
ACACAAAACGGAAGGTGTTCAAAAGAAATATGGTATCCAATTGTTGGAAT
ATTTACCGGTGAAACATGGTGACATTATCGGGGAAATCGGTTGTGGATCG
GGAAACTTGGCTGCCATTCTCGCAAGATTGGTCGGCGAAGAGGGAAGGAT
AATCGCACTTGACCCAAACATGGAGAGGATCAAGGTAGCGAAAAAAGAAT
ACGGTAATTTAAAGAACATCAAATTCATTTCTTGTAAGAGTGTCCACTTA
CCTATCCTCAAGCAAAAATGTTACGATTCTTTCATTTCAAATGCTGTTTT
ACATTGGATTCCTACAGAGGAAAAAATAATCACTTTCCGACGTATCTTGT
CCGTCCTAAAACCGGGTGGCTATTTTGTCGGAAACATCTCATTCAATCGG
TCAACTAATATGCAATTAGCGACAGCGATGCTAACACTTGAGGAGCAGGA
AGAAATCAGTGGGTTTTATTACCGTGAAAATCCAGAGAAGCTAAAGACTC
TTCTATTAGATGCTGGCTTTGAAATTGTAGAATATAAGTACCGTTATTCA
GAGATCAATCTAGGTACAGTGAGTAGTTTTCTAGACTGGATCACAGCCAC
ATATTATGGGAAGTTTGACTTCAAGGCTGCATATAAACACGTGAAAAATG
ATATAGACTTTATGAGACTTCCGAGTGGAGATGTCAAACACACGAGCGAA
GGAGCTTTGTTTGTTTGCCGAAAACCGCTGTTAATAGAGTGAATGAGTCA
TTCAAGTGCCATGGAGGCTTCAAAATCAGCCAAGTTATATCAACACAAAA
CGGAAGGTGTTCAAAAGAAATATGGTATCCAATTGTTGGAATATTTACCG
GTGAAACATGGTGACATTATCGGGGAAATCGGTTGTGGATCGGGAAACTT
GGCTGCCATTCTCGCAAGATTGGTCGGCGAAGAGGGAAGGATAATCGCAC
TTGACCCAAACATGGAGAGGATCAAGGTAGCGAAAAAAGAATACGGTAAT
TTAAAGAACATCAAATTCATTTCTTGTAAGAGTGTCCACTTACCTATCCT
CAAGCAAAAATGTTACGATTCTTTCATTTCAAATGCTGTTTTACATTGGA
TTCCTACAGAGGAAAAAATAATCACTTTCCGACGTATCTTGTCCGTCCTA
AAACCGGGTGGCTATTTTGTCGGAAACATCTCATTCAATCGGTCAACTAA
TATGCAATTAGCGACAGCGATGCTAACACTTGAGGAGCAGGAAGAAATCA
GTGGGTTTTATTACCGTGAAAATCCAGAGAAGCTAAAGACTCTTCTATTA
GATGCTGGCTTTGAAATTGTAGAATATAAGTACCGTTATTCAGAGATCAA
TCTAGGTACAGTGAGTAGTTTTCTAGACTGGATCACAGCCACATATTATG
GGAAGTTTGACTTCAAGGCTGCATATAAACACGTGAAAAATGATATAGAC
TTTATGAGACTTCCGAGTGGAGATGTCAAACACACGAGCGAAGGAGCTTT
GTTTGTTTGCCGAAAACCGCTGTTAATAGAGTGAATGAGTCATTCAAGTG
CCATGGAGGCTTCAAAATCAGCCAAGTTATATCAACACAAAACGGAAGGT
GTTCAAAAGAAATATGGTATCCAATTGTTGGAATATTTACCGGTGAAACA
TGGTGACATTATCGGGGAAATCGGTTGTGGATCGGGAAACTTGGCTGCCA
TTCTCGCAAGATTGGTCGGCGAAGAGGGAAGGATAATCGCACTTGACCCA
AACATGGAGAGGATCAAGGTAGCGAAAAAAGAATACGGTAATTTAAAGAA
CATCAAATTCATTTCTTGTAAGAGTGTCCACTTACCTATCCTCAAGCAAA
AATGTTACGATTCTTTCATTTCAAATGCTGTTTTACATTGGATTCCTACA
GAGGAAAAAATAATCACTTTCCGACGTATCTTGTCCGTCCTAAAACCGGG
TGGCTATTTTGTCGGAAACATCTCATTCAATCGGTCAACTAATATGCAAT
TAGCGACAGCGATGCTAACACTTGAGGAGCAGGAAGAAATCAGTGGGTTT
TATTACCGTGAAAATCCAGAGAAGCTAAAGACTCTTCTATTAGATGCTGG
CTTTGAAATTGTAGAATATAAGTACCGTTATTCAGAGATCAATCTAGGTA
CAGTGAGTAGTTTTCTAGACTGGATCACAGCCACATATTATGGGAAGTTT
GACTTCAAGGCTGCATATAAACACGTGAAAAATGATATAGACTTTATGAG
ACTTCCGAGTGGAGATGTCAAACACACGAGCGAAGGAGCTTTGTTTGTTT
GCCGAAAACCGCTGTTAATAGAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009196-exon-sc0000091-1491911889:337145..337363 | TCONS_00009196-exon-sc0000091-1491911889:337145..337363 | Clytia hemisphaerica | exon |
| TCONS_00009196-exon-sc0000091-1510915933:337145..337363 | TCONS_00009196-exon-sc0000091-1510915933:337145..337363 | Clytia hemisphaerica | exon |
| TCONS_00009196-exon-sc0000091-1575043694:337145..337363 | TCONS_00009196-exon-sc0000091-1575043694:337145..337363 | Clytia hemisphaerica | exon |
| TCONS_00009196-exon-sc0000091-1491911889:339353..339527 | TCONS_00009196-exon-sc0000091-1491911889:339353..339527 | Clytia hemisphaerica | exon |
| TCONS_00009196-exon-sc0000091-1510915933:339353..339527 | TCONS_00009196-exon-sc0000091-1510915933:339353..339527 | Clytia hemisphaerica | exon |
| TCONS_00009196-exon-sc0000091-1575043694:339353..339527 | TCONS_00009196-exon-sc0000091-1575043694:339353..339527 | Clytia hemisphaerica | exon |
| TCONS_00009196-exon-sc0000091-1491911889:340095..340832 | TCONS_00009196-exon-sc0000091-1491911889:340095..340832 | Clytia hemisphaerica | exon |
| TCONS_00009196-exon-sc0000091-1510915933:340095..340832 | TCONS_00009196-exon-sc0000091-1510915933:340095..340832 | Clytia hemisphaerica | exon |
| TCONS_00009196-exon-sc0000091-1575043694:340095..340832 | TCONS_00009196-exon-sc0000091-1575043694:340095..340832 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000091 | supercontig | sc0000091:337145..340832 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR025714 | Methyltranfer_dom |
| IPR029063 | SAM-dependent_MTases |
Blast
The following BLAST results are available for this feature:
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