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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000875 ID=TCONS_00000875|Name=TCONS_00000875|organism=Clytia hemisphaerica|type=transcript|length=3003bp
GCTTTATTCTATAACAGCAATCCAGCTTTTATCAGTCAGTGACGATGTCT
GTTCCATAACAATTGTCTCTTGATTGTTCTCAAATTCTGTATTATCTTTT
CCACTCATCTCATCACCAGACGTTTTCTGATCGCAAAATTGGGCAGATAG
TTTCGTCAAAGAATTTGaatcatgaaaattttcacTCACAAATTCTTCAG
CTTCATTAAATGGCATAACCTTCCCAGAAGTGACAGGACCGCTCTGATTT
TTAATGTTTGTCAAAACACTCCATGTACAAGACCTTTCTTGCTTTAAACC
TTGCAATGAATCTGTCGATTGATTCGGTCCAGTCAACGTTTTAAGTGAAT
CACTACTGTAACTGTGGTTTGTTAAGGAACTATTTACTCGCCATTCTAAA
GTCGATGTTCTGGAAAGTCGTCGAACTTCTGGTGCATTCATAACACTTGC
TAAACGATCACGTTGGAATGCTTCAGTCGTATTCTCTTCAGGGTAAAAAA
GAATCAATTTAATCTTATAACCatacaaaaacaataaaaggACAATATTA
ATAACCAATGTTAACATTGCAACCAAAAAGTCGATTTTCGTTTGATCTCT
TGTACTCAATCTCAAAGGAATGCCGATAGACCCTAATAAAACAGTTGTAA
ACATTGCGAAGAATGTATATTGCGCTTCATTGAATCTGCCAGGTAGCCCA
CGACCTCTGAAAGACTGTACGCCGCATACAATAAGTAGAATTAGGAGATA
ACAAATCTGTACGAAATAATGATCAAGTAGTTTTTCACATCTATGTTGTA
AAGTATAGTTAGTTCTATCTGTAACCGTTTTTATGGAAACTGCATGGAAA
GAAATTGTTATAATGACAATAGAGACATTTACCAGTACGGTTAGAATCAA
GATTCCCATCTCCTTGGTGGTCTGTTGCAATGCTTCTCCTTTGGTGAGTT
TGAATTTAAGATTAAATACAGTCAGAAGATGTGTTACTTTGACCAGCGAA
ATTCCAATTATAATAGTCAGTAGGATCCCTGTTAGATAGACTCGAGCTGT
ACATCTGTATGTTGTTTCAATGTTGCCGACGAATAACAAAGGTGTAAAGG
CTAGTGCCAAGTGAGCTGATATTTGAATTATGGATAATATAATGTTTGAC
GATCTTACAATAGGTGTTTGACTATATTTGTAAAAGACTGTTGAAATTAC
TGCAATAAGGCAGATTGTTGTGCCAGTTGTGACGAATAAAAGGATAGTAC
GCCATTCGCTCCACGTTAGGTAATCAACGGTCAATAATATGCATTTTGTT
TTATCAATGTTGGTAACACTGTTCAGAGGGCAACTAATGCATTTCTCTAA
AccggttttgtttttgaaattgtttcggtcACATGGTACGCAGAACCAAC
AACACGTGTTCGATGAATCGAATAAAGGGTAAAATCCTGGTCGACATTCT
TCTGAACATTTCGAAGACATATTACCAGTAGCTTTCTGTAAAATATTGCT
CTCCAAGTGAATGTCTGGTTTTGAATTGTCTTTTTGAGACCACTGTAAAG
TAAGTTGAAAATCTATTTCAATTTTATAGAGACTCCTTTTGGTGATGTAT
AATTCGTATCTGGCATGATTTGTTTCGCCATTCTCCTTGAACTTAAGGTT
TTCTCCGTTTAGATTGTTAAATGAAACATTATTCAAGTATAATCGATTGA
ATTTTCTATGGTTTATAAGTGGATACGTAATACAATGGTATGGATCAATT
CCCTGTGGGCATGGTATTTGCTTATCCAAGAAGAAACTATTAAAGGCTCT
GGTGAGTGCATGGAGACTTTCGTAGATAGCACCTAACCTGGTTAAATCCA
ATGTCAAACCCATGTCTTTCAATGTACTATTTCTGTCTTTTACTTTCATA
CTTTCAAATAGTTTTCTCAAAAAGGTTTTAGTTTGATCCTGATGAACAGC
TTGGTAAGAAATATTTAGTAGTTGATCCTCGAATTCTTGGTCTTTCCCAT
AATTAAGAACCACCGACAAAAAAATCCCACTCAAATGATTGTCTCTGTAC
ATGTCAGTAACTCCAGAGTCCTCGCTGATAATCCATATAAAATCCTTCAT
TCTATACCTTGCAGCTATGTCAAAGAATTTTTCAACTGTTTCTTTTAAAG
CCCAAATCACGACAACTTTAGACGAATTCTGTTCATTTATCTGTAAAACG
GTATTCTCCATTGTATGTACTTTGTCAACATCGAAAATCAGTTTCATATT
TAAACAAATATTATTTGATTTGAATACATCCTCCAATATGGCAATCCCAG
AACGTCCATACACGTCATCCGATCCTACAGTAAAAATGTAAGTCCATTCA
AACTCTAGTAAAACATCTTTAATAAACGTGGCTTGTTTAAAGTCATTGGG
TACAGTTCTATAAAAACTCTCTGTTGGAATCAAATCAATGCTGGTAGCTG
CATAGCTCACTACCGTTAGATTCTCATAAGAAAGTAATGAATTCAGAAAC
ACAGCATTTGAAGAAGACCGGGGTCCAATGATACCAAGCGTTTTATACAA
AGCTACATTTTGATCTACACATTGGCACTGATCCGTATCTGTAAACAGCA
CACCATCGGAACCGCCTAATAGTATCTTAACAGCAATTGAAGTCAGTTCT
GGTGAAGGCTGGTTATGTCCACTATCGAAAATTTGATAACCAAAAAAATC
TTCACCCAAATCTTTATTAATCTTGTCGATAGAGTATTTAAAATACTCCG
ACCATATGACTGCATCTGTGTTAATTCTGTCCTCAGTTTTTGATCTTATA
GGAAATACACCAATGATGCGATAGATCCCTGGCTTTGTTACATATTCACC
AGCACTGTTGGAAGTTAGAATCGACAACATCAATAGAATAGTAAGTGAAC
ATTGATTCATTTTATTAAAACAAACATCGAACtcctttttcttaaaaata
agaCGTCTTAATTTCTCTTCATCGAAAATTCATAAACTTATTAGTTAGTG
GCT Run BLAST on NCBI transcript from alignment at sc0000005:1234217..1237219- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000875 ID=TCONS_00000875|Name=TCONS_00000875|organism=Clytia hemisphaerica|type=transcript|length=3003bp|location=Sequence derived from alignment at sc0000005:1234217..1237219- (Clytia hemisphaerica)
GCTTTATTCTATAACAGCAATCCAGCTTTTATCAGTCAGTGACGATGTCT
GTTCCATAACAATTGTCTCTTGATTGTTCTCAAATTCTGTATTATCTTTT
CCACTCATCTCATCACCAGACGTTTTCTGATCGCAAAATTGGGCAGATAG
TTTCGTCAAAGAATTTGAATCATGAAAATTTTCACTCACAAATTCTTCAG
CTTCATTAAATGGCATAACCTTCCCAGAAGTGACAGGACCGCTCTGATTT
TTAATGTTTGTCAAAACACTCCATGTACAAGACCTTTCTTGCTTTAAACC
TTGCAATGAATCTGTCGATTGATTCGGTCCAGTCAACGTTTTAAGTGAAT
CACTACTGTAACTGTGGTTTGTTAAGGAACTATTTACTCGCCATTCTAAA
GTCGATGTTCTGGAAAGTCGTCGAACTTCTGGTGCATTCATAACACTTGC
TAAACGATCACGTTGGAATGCTTCAGTCGTATTCTCTTCAGGGTAAAAAA
GAATCAATTTAATCTTATAACCATACAAAAACAATAAAAGGACAATATTA
ATAACCAATGTTAACATTGCAACCAAAAAGTCGATTTTCGTTTGATCTCT
TGTACTCAATCTCAAAGGAATGCCGATAGACCCTAATAAAACAGTTGTAA
ACATTGCGAAGAATGTATATTGCGCTTCATTGAATCTGCCAGGTAGCCCA
CGACCTCTGAAAGACTGTACGCCGCATACAATAAGTAGAATTAGGAGATA
ACAAATCTGTACGAAATAATGATCAAGTAGTTTTTCACATCTATGTTGTA
AAGTATAGTTAGTTCTATCTGTAACCGTTTTTATGGAAACTGCATGGAAA
GAAATTGTTATAATGACAATAGAGACATTTACCAGTACGGTTAGAATCAA
GATTCCCATCTCCTTGGTGGTCTGTTGCAATGCTTCTCCTTTGGTGAGTT
TGAATTTAAGATTAAATACAGTCAGAAGATGTGTTACTTTGACCAGCGAA
ATTCCAATTATAATAGTCAGTAGGATCCCTGTTAGATAGACTCGAGCTGT
ACATCTGTATGTTGTTTCAATGTTGCCGACGAATAACAAAGGTGTAAAGG
CTAGTGCCAAGTGAGCTGATATTTGAATTATGGATAATATAATGTTTGAC
GATCTTACAATAGGTGTTTGACTATATTTGTAAAAGACTGTTGAAATTAC
TGCAATAAGGCAGATTGTTGTGCCAGTTGTGACGAATAAAAGGATAGTAC
GCCATTCGCTCCACGTTAGGTAATCAACGGTCAATAATATGCATTTTGTT
TTATCAATGTTGGTAACACTGTTCAGAGGGCAACTAATGCATTTCTCTAA
ACCGGTTTTGTTTTTGAAATTGTTTCGGTCACATGGTACGCAGAACCAAC
AACACGTGTTCGATGAATCGAATAAAGGGTAAAATCCTGGTCGACATTCT
TCTGAACATTTCGAAGACATATTACCAGTAGCTTTCTGTAAAATATTGCT
CTCCAAGTGAATGTCTGGTTTTGAATTGTCTTTTTGAGACCACTGTAAAG
TAAGTTGAAAATCTATTTCAATTTTATAGAGACTCCTTTTGGTGATGTAT
AATTCGTATCTGGCATGATTTGTTTCGCCATTCTCCTTGAACTTAAGGTT
TTCTCCGTTTAGATTGTTAAATGAAACATTATTCAAGTATAATCGATTGA
ATTTTCTATGGTTTATAAGTGGATACGTAATACAATGGTATGGATCAATT
CCCTGTGGGCATGGTATTTGCTTATCCAAGAAGAAACTATTAAAGGCTCT
GGTGAGTGCATGGAGACTTTCGTAGATAGCACCTAACCTGGTTAAATCCA
ATGTCAAACCCATGTCTTTCAATGTACTATTTCTGTCTTTTACTTTCATA
CTTTCAAATAGTTTTCTCAAAAAGGTTTTAGTTTGATCCTGATGAACAGC
TTGGTAAGAAATATTTAGTAGTTGATCCTCGAATTCTTGGTCTTTCCCAT
AATTAAGAACCACCGACAAAAAAATCCCACTCAAATGATTGTCTCTGTAC
ATGTCAGTAACTCCAGAGTCCTCGCTGATAATCCATATAAAATCCTTCAT
TCTATACCTTGCAGCTATGTCAAAGAATTTTTCAACTGTTTCTTTTAAAG
CCCAAATCACGACAACTTTAGACGAATTCTGTTCATTTATCTGTAAAACG
GTATTCTCCATTGTATGTACTTTGTCAACATCGAAAATCAGTTTCATATT
TAAACAAATATTATTTGATTTGAATACATCCTCCAATATGGCAATCCCAG
AACGTCCATACACGTCATCCGATCCTACAGTAAAAATGTAAGTCCATTCA
AACTCTAGTAAAACATCTTTAATAAACGTGGCTTGTTTAAAGTCATTGGG
TACAGTTCTATAAAAACTCTCTGTTGGAATCAAATCAATGCTGGTAGCTG
CATAGCTCACTACCGTTAGATTCTCATAAGAAAGTAATGAATTCAGAAAC
ACAGCATTTGAAGAAGACCGGGGTCCAATGATACCAAGCGTTTTATACAA
AGCTACATTTTGATCTACACATTGGCACTGATCCGTATCTGTAAACAGCA
CACCATCGGAACCGCCTAATAGTATCTTAACAGCAATTGAAGTCAGTTCT
GGTGAAGGCTGGTTATGTCCACTATCGAAAATTTGATAACCAAAAAAATC
TTCACCCAAATCTTTATTAATCTTGTCGATAGAGTATTTAAAATACTCCG
ACCATATGACTGCATCTGTGTTAATTCTGTCCTCAGTTTTTGATCTTATA
GGAAATACACCAATGATGCGATAGATCCCTGGCTTTGTTACATATTCACC
AGCACTGTTGGAAGTTAGAATCGACAACATCAATAGAATAGTAAGTGAAC
ATTGATTCATTTTATTAAAACAAACATCGAACTCCTTTTTCTTAAAAATA
AGACGTCTTAATTTCTCTTCATCGAAAATTCATAAACTTATTAGTTAGTG
GCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000875-exon-sc0000005-1575043694:1234217..1237219 | TCONS_00000875-exon-sc0000005-1575043694:1234217..1237219 | Clytia hemisphaerica | exon |
| TCONS_00000875-exon-sc0000005-1510915933:1234217..1237219 | TCONS_00000875-exon-sc0000005-1510915933:1234217..1237219 | Clytia hemisphaerica | exon |
| TCONS_00000875-exon-sc0000005-1491911889:1234217..1237219 | TCONS_00000875-exon-sc0000005-1491911889:1234217..1237219 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:1234217..1237219 - |
Blast
BLAST of TCONS_00000875 vs. Swiss-Prot (Human)
Match: GRM4 (Metabotropic glutamate receptor 4 OS=Homo sapiens GN=GRM4 PE=2 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 2.815e-39 Identity = 167/751 (22.24%), Postives = 325/751 (43.28%), Query Frame = -1
Query: 433 KTLGIIGPRSSSNAVFLNSLLSYENLTVVSYAATSIDLIPTES---FYRTVPNDFKQATFIKDVLLEFEWTYIFTVGSDDVYGRSGI-AILEDVFKSNNICLNMKL-IFDVDKVHTMENTVLQINEQNSSKVVVIWALKETVEKFFDIAARYRMKDFIWIISEDSGVTDMYRDNHLSGIFLSVVLNYGK-------DQEFEDQLL-----NISYQAVHQDQ-----TKTFLRKLFESMKVKDRNSTLKDMGLTLDLTRLGAIYESLHALTRAFNSFFLDKQIPCPQGIDPYHCITYPLINHRKFNRLYLNNVSFNNLNGENLKFKENGETNHARYELYITKRSLYKIEIDFQLTLQWSQKDNSKPDIHLESNILQ-KATGNM--SSKCSEECRPGFYPLFDSSNTCCWFCVPCDRNNFKNKTGLEKCISCPLNSVTNIDKTKCILLTVDYLTW-SEWRTILLFVT-TGTTICLIAVISTVFYKYSQTPIVRXXXXXXXXXXXXXXXXXAFTPLLFVGNIETTYRCTARVYXXXXXXXXXXXISLVKVTHLLTVFNLKFKLTKGEALQQTTKEMGILILTVLVNVSIVIITISFHAVSIKTVTDRTNYTLQHRCEKLLDHYFVQ------------IC---YLLILLIVCGVQSFRGRGLPGRFNEAQYTFFAMFTTVLLGSIGIPLRLSTRDQTKIDFLVAMLTLVINIVLLL-----FLYGYKIKLILFYPEENTTEAFQRDRLASVMNA 2544
+ +G+IG SS ++ + ++L + +SYA+T+ DL F R VP+D QA + D++ +W Y+ TV S+ YG SG+ A ++ + +C+ + I K + + ++ E ++++ V+I+A ++ + + + A R + + DS + + HL + V K D+ F + L NI + +D ++ L+K K +R +D + ++ + ++++A+ A ++ D CP + C ++ + + Y+ NV+F+ + G + F ENG+ RY++Y + L ++++ W+ +HL + +G S CS C+PG CCW C PC ++ + C +CP + ++T C + + L W S W + LF+ G L VI+ F +Y+ TPIV++S LS + ++ T L + + C+ R G+ ++I L K + +F + ++ I + +I++ + + V D ++ + + ++ LD F + IC Y ++L++ C V + + RG+P FNEA+ F M+TT ++ IP+ T Q+ + TL +++ L LY K+ +ILF+PE+N + ++ L +V+ A
Sbjct: 149 RVVGVIGASGSSVSIMVANILRLFKIPQISYASTAPDLSDNSRYDFFSRVVPSDTYQAQAMVDIVRALKWNYVSTVASEGSYGESGVEAFIQKSREDGGVCIAQSVKIPREPKAGEFDKIIRRLLETSNARAVIIFANEDDIRRVLEAARRANQTGHFFWMGSDSWGSKIAPVLHLEEVAEGAVTILPKRMSVRGFDRYFSSRTLDNNRRNIWFAEFWEDNFHCKLSRHALKKGSHVKKCTNRERIGQDSAYEQE-GKVQFVIDAVYAMGHALHAMHRDL---CPGRVG--LCPRMDPVDGTQLLK-YIRNVNFSGIAGNPVTFNENGDAP-GRYDIY--QYQLRNDSAEYKVIGSWTDH------LHLRIERMHWPGSGQQLPRSICSLPCQPGERKKTVKGMPCCWHCEPC--TGYQYQVDRYTCKTCPYDMRPTENRTGCRPIPIIKLEWGSPWAVLPLFLAVVGIAATLFVVIT--FVRYNDTPIVKASGRELSYVLLAGIFLCYATTFLMIAEPDLG-TCSLRRIFLGLGMSISYAALLTKTNRIYRIFEQGKRSVSAPRFISPASQLAI---------TFSLISLQLLGICVWFVVDPSHSVVDFQDQRTLDPRFARGVLKCDISDLSLICLLGYSMLLMVTCTVYAIKTRGVPETFNEAKPIGFTMYTTCIVWLAFIPIFFGT-SQSADKLYIQTTTLTVSVSLSASVSLGMLYMPKVYIILFHPEQNVPK--RKRSLKAVVTA 866
The following BLAST results are available for this feature:
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