TCONS_00009039 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009039
Unique NameTCONS_00009039
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length789

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009039 ID=TCONS_00009039|Name=TCONS_00009039|organism=Clytia hemisphaerica|type=transcript|length=789bp
TTCCCAACATTACCAAGTTCCTCAGATTGTTCCAGCACAACGTGTCCAAC
ATGTGTttccacaacaacaacagctGGTTCTGCCACTCCAACAACGGCCC
TTTCTATGGCAAGGTGCCAGTGGAGAAGGCACATCCAATCGACTCCAATT
CATTCCGAACCAGCCACAAAGATATCCAGTACCGCTCAACGCGTGTTTCG
TGTGCGGTGAAACCGGCCATTGGAAGCACCAGTGCCCTAAAAGGTCAACA
ATGGGATAGTGagcCCTTACATCTGCACACAAATTAAGGAGAATAAACAA
GTCTATTTCATATTCTTCAATCCGGGATCAATTTAAAACGATATTGAGTT
TACTTGGCTACAACAAAGCACTTTTTGGTTTACATAGTCTAAGGTCGGGA
GGAGTCACGGCGGCAGCTAACCTTGGTATCAAAGACAGGTTGTTGATGAA
GCATGGTCGCTGGAAGTcggcaaatattaagaataattATATATCCGAGA
ACTTAGGTAATTTATTGTTTGTTTCGAAAAATTTAGGGTTATAAAGTATT
AATAATGTACGTTTTCAACATTACCCTCTACCAGTTTTGAAGCGAAATTT
ATAAGTTTGTCTCATGCTCTTAGTCCACAGGCTTTGGTACGGCTCCTACT
ACCAGAATACAAAAAGCTGTCTCGAAATCGAGATTTTTGGTGTTCAGTTA
TTCTTTTTCCCGTTTTCGGTCTTTTGTGTTTTCCATTTGTGATCTGTGAC
TTTTCGGAGAATTAGGAAataaatcaatttattttcGGT
Run BLAST on NCBI

transcript from alignment at sc0000089:468266..475431-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009039 ID=TCONS_00009039|Name=TCONS_00009039|organism=Clytia hemisphaerica|type=transcript|length=7166bp|location=Sequence derived from alignment at sc0000089:468266..475431- (Clytia hemisphaerica)
TTCCCAACATTACCAAGTTCCTCAGATTGTTCCAGCACAACGTGTCCAAC
ATGTGTTTCCACAACAACAACAGCTGGTTCTGCCACTCCAACAACGGCCC
TTTCTATGGCAAGGTGCCAGTGGAGAAGGCACATCCAATCGACTCCAATT
CATTCCGAACCAGCCACAAAGATATCCAGTACCGCTCAACGCGTGTTTCG
TGTGCGGTGAAACCGGCCATTGGAAGCACCAGTGCCCTAAAAGGTCAACA
ATGGGATAGTGGTAAGAGAGTTTTTCTGTTATCTCATAACAAACCAAGGG
TTAAAGGGAGTTTGAGAAGACACCTTCATTTCTGGAGAGAAAAGTTAGAG
GCTAGTACACATATTTTGGACGTTATAGAGCATGGTTACAAAATTCCTTT
TAGATATAATCCGCCACCTTTTGAATTTAAAAACAACAAATCAGCTTTAC
AACACAGAAATTTTGTGGAAGAGACCCTTGAGAGTTTATTGGAGGAGGGA
AAAATTTTTGAAGTCCAGAGACCTTTTGCTACTAACCCTTTGTCAGTGGC
AGAGGATCCAAGTGGGAAGAAAAGATTGATTTTGGACGTCAGTTTTTTAA
ATCAATTTTTGTGGAAAGAAAAAATAAAATTTGACGANNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTCCAAGTGGGAAGAAAAGATTGATT
TTGGACGTCAGTTTTTTAAATCAATTTTTGTGGAAAGAAAAAATAAAATT
TGACGACTGGAAAGTTTTCGAGGATTTTATCGATTCAGATGCAGAGGCAT
ATTTATTCAAGTTTGATTTGAAAAATGGGTATCATCATGTGGACATACAC
TGCGACCACCAAAAATATTTAGGTTTTTTACAAGATTTAGCGAACGATAT
TTATATAGCTTGTAAGAAAAAGGACATAAAATTGACTGTCACTTGGATTT
CTAGAGACCAAAATGGACAAGTGGATAAGGTAAGCAAAACAATAGATTAC
GACGATTGGTTCGTAAAAGCTACTTTTGTGCACGACCTGGAAGCAAAGTG
GGGCAAGTTTAGTATAGATTTGTTTGCAGATAGCGACAACACTAAATGTG
CACGTTTTTGTTCAAAATATTTTTCTCCAGGGAGTTCTAAAGTGGATGCC
TTTTCGTTTGATTGGTCGGGAGAATTTTGCTACATAGTCCCTCCGGTTTA
CCTAATTCCCAAAGCAATTAAACATTTTATAGCTTCCCAGGGGAGGGTAA
AAGGTATTCTAATTGTTCCTTATTGGCCCTCTGCAGTATTTTGGCCTTAT
TTGATTTAGAAAGAAGGTGTTTTTAAAGATTTTGTCAAAGAAGCTGTTTT
CTATAAGGATTCGCGGTTTTTCATTTCCCAGGGGGAGTATAAGGGTTCTA
TTTTGGGAGATGAGGATTTAGTTATACCTTTTTATGTTTTGTTGATTGAT
AATCTTTATATTTAGATTTGGTTTCAAGGAAAATCAAACAAAGTTTTCAA
GTTAACGATCCAGAGTTGCAAGCGTTAGTTTATTTGGTGCCAGGGGTATT
GAATTGTTCCAGGGCAAACAACACAATTACGAAATACGAATGTTATTTTA
AACAATGGGTTAATTGGTGTAATTGTTTTCAAGAGATAGTGCCATTACCA
GCAAAAATTCAACATATCATTTTGTTTATAGTCGCATCGGTACAACAAGC
AAAGTCTTATCCGGTAATAGAGTCAACCCTAATGGCCATAAAATATTTCC
ACAGCGTGTCGGTCATGCATTAAAACATTCGAAAATGTTAGAACATGTTT
TAGAGGCGGCAAAAAGATTGGTGGGGAAGAGCGCTATAAAGAAGGAACCT
GTCACAGTAGACATGTTAAGGAGAATGGTGAAAGTTTTGTCAACATCGAA
GAATAACCTCAAAAGCTTGAGATTGACTACGATTTTACTTACGTCTTTCG
CTGGGTTTTTACGATTTTCTGAATGTGTGAATTTACGAAGATCCGATATA
AAATTTTTTGCCACACATGCTGTTCTTTTTATTGAAAAGAGTAAAACTGA
TATTTATAGGGTCGGACATTGGTTACATTTGGCAAGATTANCGAATGTGT
GAATTTACGAAGATCTGATATAAAAATTTTTTTGCCACACATGCTGTTCT
TTTTATTGAAAAGAGTAAAACTGATATTTATAGGGTCGGACATTGGTTAC
ATTTGGCAAGATTAGATTNATCGCCTCTATAGATTAAAATGTTTGCTTCC
ATAATGGTGGAATCTACCTCATTTGGGGCCGTCTACATAGTACGTACGCA
CTAAAATGTCGAAAATCGAGACCCACCCCTCCCCCCTTAGTGCGTGTACT
ATGTGGACGGCCCCTTTAATAACACATTTGAGTGCCATCACTCCGTAACA
AATGAATTAAATATATTTTAGACCTAACTCCAGGTACCCCGGTGCAGGTC
CTTTAAATTAACCTGTGTTCGTCCGTCCGTCCGTTCGTCTGTTACCAGCT
TTTCTCGAGATTGGTTCATTACTTTTTTCTGATTTCTTGCACAATGATGT
AAATTGATGATTCCTAAAAAGTGACGGAGCCCGATTTTTATGCCGGAAAA
ACTGTTTTTTGGCATTTTCTCGAGATTTTATCTTTGAGCTTTTTTGCTCA
AAGATGTGTATTAACAATGCCCAAAACATGCCCAAGTCCGATTTTTGAGA
AACAAATTTTCCCGGCGGAAAATACCGGAAATATGCCGGAAATCGCCGTT
TTTCTGGTTTTTCATTGGACTTTTTCCTTATAATTGGTTGTTATTTCATT
CAAAAACATTATTATTAGCAATGCCCACCATCAATCATGTTTCAATTTTC
AATAAAATTGATTTTTGAAGCTGGAACTATTTAAAAATCGTCGGAACAAC
CTATTTTCGTCGGAAAGACAGTATTTCTTGAATATCGAGCTGTACTTTAT
ATTTTTTTATGAAATTTTACACACTCATGCAAAACGACAATACCTAAAAT
GTGACGGAGCCCATTTTCAAAAAAAGAAATTCCAGAAAAACCGGTTTTTT
GACATTTTTTCGAATTTTCATCCTTTGTTTTTTCTGATTTTTAGCAGAAA
GATGCGTATTCGCAATGCTCAAAACATGGCCGAGTTTAGCCAGTGCCTTC
CCACAAACCAAACTTTTTCTTTGTTTTATGGTCAGTTACACTTTGAAGCG
TTTGTCGAAAGTTATCGCACTGTGGTCTCAATTTTTGAGTTCCGTGCATT
AAAATCAAAAAAAAAGAATCCTCGGGATCGGGATGGAGTTTGGTGAGCTA
AAAATGTTTTTTTTTTAATTATTTTGATACACCCCTAAATTATAACGAAA
GAACTATAGAAGCAAAAAAGTTTCCAAGCAGCTCCAATTAATGGTATTGT
CAACAGGCTCTTAATTTAGAAAGGTAATGAGATAATCCCACTCCTTCAAA
AGGTTTTCTTCCTTGTAGAGAAAAGCAACCAAAATCAAATAAAAGAAAAC
TCTCAACACTAGCCATAGCCAGTTTTTGAAACAGGGATGTAAAATAAAAA
ATAATGAGGATTCCAAGACTATCATTTGATGAAAATGAGTCGATCTCGTG
CAATTTCAGGATTAAGAGGTACAAATAATAGAAATATGTCATTAATGTAT
TTACCAAAAAATTTAGCAAAGTTCTGCCAAACCTCCACATTTTACTGGTT
TACTATCTAGTTTCCAAAGTTGAGAAATTTAAATCTAAAATCTGCTCTCA
AAATCAATTAGTAGTTTTAACTCTGATTATACAGGACCAAACTCTTCACA
TTAAAATGTAAAAATTCCCCGAAAAATTCTAGAATAATATCATAAAAATA
GTGTCAAGTTTTGGCAATCGTCCAGAATTGTCAAGACTTGTATGTCACTG
GTGAAGACAGCTGTGAAGAAAGTTTTTCATTTCCATTCCCAGCAAACTTT
CGAATCGAATACAATCAGATTTCACTTTACTTTCGATCATATGTCAATTT
ACTTTCCACCATTTTATTAGTGGAATATTTTCAAACTAGCGACCAGATAG
AGACCACATCGAACAGCCAATAAAAACAATAACAAACAAACAGTTCTTCT
TTCCACTGGAATAGGCCAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCAGGAATAAACAAAATAAAT
TCTTCCAGGTTTCATGCCATATCCAAAAGATATTCGTTGCCATCCCAAAG
CATACAAAAAGTACAAGTTCGTCTTCAATCATCGACGTTGCATTGCAGCA
CTTATGGTTCTAGCTAGGATAGGATCTAATCTGATTTGATAATCTTCATT
CTCAATGTTTACAGTTAATCTCTGGGATTCTTCAATCCTGTTATGGAAAT
AACCCAACAACTCTGCTGCTGTTGATGCAAAAAAAAGATTTCCATCTTCT
ATTCTCCTCCATCCACTGATACTGTTTCTTTTTCGTTCGGTTTCAACTTT
TCAAAACAAATGATTTTGGTTCTCTCTCAAAAAAAATTCAAANGGTTTCA
ACTTTTCAAAACAAATGATTTTGGTTCTCTCTCAAAAAAATTTCAAAATT
CGAATCACAAAATTCGAATTACAAAATTCGAAAGATCGAAAATCTATTTG
AACTTTACCGATCGAAGCAATGCAGCGACTTCTTAAAAAACGAAAAAAAG
CACACGCGATGGAGTGCAGCTTGTCCAAAGTCACGGTAAAATGAGCTGCG
CCGAAGAGAAAATCTTGGACGGACTTTCCCGTCCAAGAACATTCGATTCC
ACGGCAAAAAGTAACAGACGTTAAATCGCGATAAAAAAGCGNNNNNNNNN
NNNNAAATCTTGGACGGACTTTCCCGTCCAAGAACATTCGATTCCACGGC
AAAAAGTAACAGACGTTAAATCGCGATAAAAAAGCGGTTTTCGTCTAACA
GGCTAGGAACAATCTAACTCTGACAATTTTATTTTTAGAGCCCTTACATC
TGCACACAAATTAAGGAGAATAAACAAGTCTATTTCATATTCTTCAATCC
GGGATCAATTTAAAACGATATTGAGTTTACTTGGCTACAACAAAGCACTT
TTTGGTTTACATAGTCTAAGGTCGGGAGGAGTCACGGCGGCAGCTAACCT
TGGTATCAAAGACAGGTTGTTGATGAAGCATGGTCGCTGGAAGTCGGCAA
ATATTAAGAATAATTATATATCCGAGAACTTAGGTAATTTATTGTTTGTT
TCGAAAAATTTAGGGTTATAAAGTATTAATAATGTACGTTTTCAACATTA
CCCTCTACCAGTTTTGAAGCGAAATTTATAAGTTTGTCTCATGCTCTTAG
TCCACAGGCTTTGGTACGGCTCCTACTACCAGAATACAAAAAGCTGTCTC
GAAATCGAGATTTTTGGTGTTCAGTTATTCTTTTTCCCGTTTTCGGTCTT
TTGTGTTTTCCATTTGTGATCTGTGACTTTTCGGAGAATTAGGAAATAAA
TCAATTTATTTTCGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005053XLOC_005053Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009039-exon-sc0000089-1575043694:475171..475431TCONS_00009039-exon-sc0000089-1575043694:475171..475431Clytia hemisphaericaexon
TCONS_00009039-exon-sc0000089-1575043694:468266..468793TCONS_00009039-exon-sc0000089-1575043694:468266..468793Clytia hemisphaericaexon
TCONS_00009039-exon-sc0000089-1510915933:475171..475431TCONS_00009039-exon-sc0000089-1510915933:475171..475431Clytia hemisphaericaexon
TCONS_00009039-exon-sc0000089-1510915933:468266..468793TCONS_00009039-exon-sc0000089-1510915933:468266..468793Clytia hemisphaericaexon
TCONS_00009039-exon-sc0000089-1491911889:475171..475431TCONS_00009039-exon-sc0000089-1491911889:475171..475431Clytia hemisphaericaexon
TCONS_00009039-exon-sc0000089-1491911889:468266..468793TCONS_00009039-exon-sc0000089-1491911889:468266..468793Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:468266..475431 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.25854	1.87668	0	0.414005	0	0	1.0567	0	0	0.443967	0	0	0.591849	0	0.622381	0.51649	0.571515	0.358402	0.420578	0	0.124169	0	1.5575	1.46828	0.230976	0	0.0358054	0	3.64533	1.99221
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009039 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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