TCONS_00009013 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009013
Unique NameTCONS_00009013
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1422

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009013 ID=TCONS_00009013|Name=TCONS_00009013|organism=Clytia hemisphaerica|type=transcript|length=1422bp
CTGCCCAGTGCGAATCagtaattttaaattatttacttttctgctgattc
agcatctctctgttaaaaaaatgatgttttcgcttgtatatatattttta
agatgATATGATTTGATGTTTTCTGTTTTTCAGGTCTATACATACATTTA
AAAATTTCCTAAACAAGAAAATAACCCTTTCGAACACGAAATGTATGAAA
TGGAGATACAGtacagcaaaaaaaagttttaaaatgtatatcaACGAAAT
GAAATATTGAGAAGGGAGGAAATAAGCATCTATCAAGGGACAAACTGTCT
TGATTCAAGATAGCATTTAACCAAACGACATGGAAACCAACACCCTCAAT
GAAACCACGCCCAACCAAGCTCCTGAACAGAACAgtgtaaaaatatataa
aaaacggGTTGGAAGAAATGGTTCAGGCTGGAAAAAGaatAAAACCAAAT
ACATAGCAGATGCCAATCTAAGAAGAGCCAAAGAAATCTCGAAAGTCAAC
ACTTTGTCCAAAAATgTCAAGGAAAGTGGAGTTTTAACGAAGATGCCGTT
ATGTTTCTTCTCCTACACAACGCATGACAGGAAAATCACAGCCGAATGCT
CAGTCAAAGGACTTGAAGCTTTTATAAACGATCCAGTCGtaattgaaaaa
ttcaaaaaggcTGTTTTGGCTATTCAAATCGACGAAGACAACCTAAGTGT
TGAAGAAGAAGACTGTGAAAAAGAAGGGGTTGATTTCTTCGACTTCCCTT
TGAGCTTTCCAAGTCAAAATGCCATAAAGAAGAGGAAGCTTGTCAACGAC
TTGGTCAAGTTTGATAGTGGTTGTTCCTCTAAGCGGATGAAATGGTCTGA
TGACATTAAACCATCTTGGTGGCCCTTGGATGTTGATTTCATATCACCTG
ACACCAAAGACAACAGACCAACAGTTCAAACCCTGGATAAGATTTTGCAT
GCATTTCATGATGACcaggttgaaaataaaatgGACTTGATGAGTGAGGA
GGATATGCCGAATGCCTCAACAATCGAATCGCTAACTGACTGGAGTAAGT
TACAATTAAAAACATGGCGCATATTGATGGATTGGTTGAGAAATCGATGG
CAGGAGCCAGTCCTCTGCCTTGCTACACAAAAGATTTCTTTAAGGAACAG
AAGTATTGTGGCTGATAAAGGTTTTTCCGGAAGAGAGCCCGTCTTTCACC
CGGATCTTGCAAAGTGTTTGTCATGGTTAATGTTCGGAACTGTTGACAGA
GAAGAACTTGTTATTAGAATCGCTATTATCGCATCTGTCTATTGCTTGAA
GAACTTTTCTGAACGTATGACACAAGGTAACTCAGATCATAGTGCGTCAC
ACTATAAAAGATTGTTTAAAAGCGATTCAATGGCGTCACTACAGCAGAAG
CTCGTTGATGATTCATTGGCTC
Run BLAST on NCBI

transcript from alignment at sc0000089:5800..12641-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009013 ID=TCONS_00009013|Name=TCONS_00009013|organism=Clytia hemisphaerica|type=transcript|length=6842bp|location=Sequence derived from alignment at sc0000089:5800..12641- (Clytia hemisphaerica)
CTGCCCAGTGCGAATCAGTAATTTTAAATTATTTACTTTTCTGCTGATTC AGCATCTCTCTGTTAAAAAAATGATGTTTTCGCTTGTATATATATTTTTA AGATGATATGATTTGATGTTTTCTGTTTTTCAGGTCTATACATACATTTA AAAATTTCCTAAACAAGAAAATAACCCTTTCGAACACGAAATGTATGAAA TGGAGATACAGTACAGCAAAAAAAAGTTTTAAAATGTATATCAACGAAAT GAAATATTGAGAAGGGAGGAAATAAGCATCTATCAAGGGACAAACTGTCT TGATTCAAGGTGAATATTGAAATGTTACTGGTTGATAAATCTAGGGAAAA TGGCTCAAGCAATGAGGGCCATAAACGCCAATGGGAGAAGGAGAGTCATC GAAGACTAAAGTTGTCAGTCAATTGGACGCAGATTGATGTGTGCTAAAAT TATGTATTACCTTTTTGGATTTTAAAGACTTTTAAGTGACATGTTTTGGA TTAATTTGTAAATTATGAGTTTATTACATTCTAGTTTATATAGGGAATTG ATGCCGCATTTAGCCGCTTCATATATTATTTAACTATAGTAATTTTTTAT GCTTGGATGCTATAAATACCATTTATCAGAGAATTTAAAACTTACCTAGC TCCTTGGTACATTGGTGAGCTCCAAGGCGTAATACAACATTGTACAATTA ACATGAAAAAGAGAAAATAAACAACGAGGAGAGATTTTAAGCAACTTCAT TTACACACTAGACCAGAAACTTTTCTACATGATGGATATGTGCTTACCAA TCTATTTTTTCATCAATATATTCGGTTGAACTTATCAGAACATTAAAATT TTGTACATTACCTGAAAAGACAAGAATGCATGATTTTTAAATATCTAATG ATAAATTTGACTAAACACGTTTTCTTCATCCCTGAACAGGTTTCTTTATC TTTTTCCTAATTATTTTGTATAATGCAATTAATTGAGTTTAAAGCCATGC CTCACTTTGTTCCATGTATCATTTATTTAATGAATGAATGCACTTGACAG TGTTCCAAACATGACTCCTCCACGATAATCTCTGACTCCATGAAGTTCGA GAGACAACAGATTTGAATTTTATGCTCGTTAGCTAATCAAAAGTAAATTT TTTCAGAACGTTAATTAACCTAGACTGAGGTAATTTCTTTAAATCCTACT TTTTTTTATTAAAAGTATTCAACTGAATTCAACTATTAAAATGATTTAAA TACTTTTAAATTCCCATAAGATTTTGTTAACCAAAAAAAATCAAAAGAAC AGAAATAATTTCTTATCTGCAATATTTCAAATTGTTGTGTAGTAGTCCTT TGAGACTAGCCAGAAATCTGAGTATTCCAGAACTACAAAGAATTAACTAA AGGTATAAATATACAATTACTGTATTTGCGAGGTTAAATTTTCTACAATT GATTGGCATAAACTTTCTAATGTTGGTTTGTCAAGAGTAGAATCTTTGTT CAAAACTACTATAAAAGGGTAGATCTTCGTTATCTAGATAGCATTTAACC AAACGACATGGAAACCAACACCCTCAATGAAACCACGCCCAACCAAGCTC CTGAACAGAACAGTGTAAAAATATATAAAAAACGGGTTGGAAGAAATGGT TCAGGCTGGAAAAAGAATGTAAGAAAAAATTAATTCTCTTAACTCTCCCT TTAAAATAAGAAGAATAACAAATTTTGAGTAGATTTTTAGGAGTTTTGGA TTAAGATGGTAATACAATAATTATCAAGGAACAACTACTTTTCAGTGGAG TCAACTCCAAACGAAATTTTCTTCCTAAGTCCTGGATGACAGCAAAGTTT CCCTTTTTAGTTTTAGAGAATCTAACATATATATATATATATACTCTGCA AATTTGTTTTACATCCCGGATGGGTTTTTCTATTATTCTTCAGAAAACCA AATACATAGCAGATGCCAATCTAAGAAGAGCCAAAGAAATCTCGAAAGTC AACACTTTGTCCAAAAATGTACGTATTTCATGCCAATCTTGAATAGATTT ACTGCGATTTCGTCACAATATTTGTCAATAATGCCGGCTGACAACTTGAT GGCCTCGCAGGATTTAAATGACTACTGATGACTAACATTTTTGAAAAGTA TAAAAAAGAAAATATACATCATTCTTATTTGATTAAATATTATTTTTAAG GTCAAGGAAAGTGGAGTTTTAACGAAGATGCCGTTATGTTTCTTCTCCTA CACAACGCATGACAGGAAAATCACAGCCGAATGTAATTTTTGCCTTTTAT TTATTATTTAACTTTCCTGCAAATTACTTATATTTACTGATTCAAATTTC CCGCGAGTTAATTTTGTTTTAATTTCAAACTTATTTCACTTACTTTTCAA ACAGTTATTTCAGTATCACTTTTAAAATTAAAATTGTTTATTCTAGGCTC AGTCAAAGGACTTGAAGCTTTTATAAACGATCCAGTCGTAATTGAAAAAT TCAAAAAGGCTGTTTTGGCTATTCAAATCGACGAAGGTCAGTACTTTTGT AAGGGGAGGGCTTCTTGAAGTTTCAGATTTCTCTCTTTTAAGGTTCGATA AGTTTGTTAGCACGAAACTGGTACTAAACTGTTGTGTTTATTTAAAATAA TTGAGCACATAAGATTTTTTCAGTTTCTAAATATTGTAAATTAATAAAAA AACTTATTTTCTCTGTTAGACAACCTAAGTGTTGAAGAAGAAGACTGTGA AAAAGAAGGGGTTGATTTCTTCGACTTCCCTTTGAGCTTTCCAAGTCAAA ATGCCATAAAGAAGAGGAAGCTTGTCAACGACTTGGTCAAGTTTGATAGT GGTAAATTTTGTGCAATATGCAAAATGGCCTGAACAACCCCCATTAAATT TCAATCCTATATTTATCTTTTCAACCTAGACTATACAAAGGCTGTACACT AACCTTTTCATTTCAAAATATTAATTTCTTTTATTTGATAATAAAATATA TTTATGAATCAAAAGGGTATGAAACGGTAAGTTGTTGCCCTCGTGGTCCT CCTAAACTTAAAGTCTCAAACCTATCTTTTTTAGAAAATCTCTTATTCCT AAAAATTGGAAATATAGCCTTATTGTTGAAATTTTCACTTTCACCTACCT GTGTCAATAGGTGTCAAAAAGTCACTTCTATCAAATTTAATTTGTCATCA ATGCTTATAAATTAGTATTAAAAATTCCTTAAGGTAATGAGTTCAAAGTT CAAAATTTGAAAAAAACTACCCATGAAATTCTTTTTTGTTATTTCGTCTT TTAAATAGGTTGTTCCTCTAAGCGGATGAAATGGTCTGATGACATTAAAC CATCTTGGTGGCCCTTGGATGTTGATTTCATATCACCTGACACCAAAGAC AACAGACCAACAGTTCAAACCCTGGATAAGATTTTGCATGCATTTCATGA TGACCAGGTTGAAAATAAAATGGTATATGATTATATCTAATTTAGTTTCC AACATACTATATTCTACATTAAGATATCCTGAAAGTAAATCTATTTGTGT AATTTGTGTATACGAAACAGTATGAAACAAAATAGAAATTTAACTCTTCT CAAAGGACTTGATGAGTGAGGAGGATATGCCGAATGCCTCAACAATCGAA TCGCTAACTGACTGGAGTAAGTTACAATTAAAAACATGGCGCATATTGAT GGATTGGTTGAGAAATCGATGGCAGGAGCCAGTCCTCTGCCTTGCTACAC AAAAGATTTCTTTAAGGTAAGAAAGCTCTTGTTAAGGTTTATCGGCAGCT TTGAATCTGCTGATTTCATCACAAAATTGAAACTGAACTGAATTGTTTCT GAACTGTTTAAAAAATTGTTGTTTGATCTAGTGGCTTCATAAAACTTTAC TAGAGCAACAATTTTCATACCTTTAAATTTTTGCATTGCATATTACAGGA ACAGAAGTATTGTGGCTGATAAAGGTTTTTCCGGAAGAGAGCCCGTCTTT CACCCGGATCTTGCAAAGTGTTTGTCATGGTTAATGTTCGGAACTGTTGA CAGAGAAGAACTTGTTATTAGAATCGCTATTATCGCATCTGTCTATTGCT TGAAGAACTTTTCTGAACGTGTGAGTTTTCAAATTCCTTAAATTTCTCTA AATCACATTCCCTGTATTCCATTTTTCTACCGGATTATTGACCGGGACTG CTCTGACCGGGTCACTGATACAGGGGTGTATTTAAACAATCATTCTTCAT CTTTTATTTTATTTATTTCGTAGTGTATAATGTGGAAAGATGATCGGTTA AAGAATGATAAGAAATATTCGATCTTTTTTCGATCGTTTTTAATTTAATG ATGATTGACTGTATTTGTTTTATCCAGATGACACAAGGTAACTCAGATCA TAGTGCGTCACACTATAAAAGATTGTTTAAAAGCGATTCAATGGCGTCAC TACAGCAGAAGCTCGTTGATGATTCATTGGCTCATAAATTAGGTGAGATA AATTCAAATATAATTTTCACTCAAATGTTATTGGACTACTCCTCTCGATG ATTTTGTTTCTAAGATAAGATCCCTAATATAAGTGCAACGTTTATTTCGT TTCATGACAGAAAAGAAGACGCTTTACTGACGTTAATTCATAGAGCCTAT TCGAAAATCCGGGTGTTTTGCATTACTTTTAAAAGCATTTGATAAAAATC ATTAACGATTAGATCCAAATGAAAATGGACGGGTTATTCATTAGCACATT ATTTATAACATTGCAGGACAAGACAAGACAAGACAAGACAAGACAAGACA AAAACATAACACGACATGACAATGACATGAGAATACCTACCATTAGCTTA CACAGCATTTTTTAAACAAAAAACAACTTTCCCCTCTCTCCCTTCACAAA ACTTGAGAACAATGTTACAAGATGGATTCTAATGTTAATTATGTCAGAAC AAAAGGCGTGCTTTTGATATCATAAAAAAATAATATCTTTCAATATCACT TTACCCTCAAGTTGAAAATTNTATTTTGATGAAATTTCCGTGTTAAGATT TTCAGAAGTTTTCGCCATTTTGTTGCATTGTCAAGAGCACAACCGCACAG ATTTTATTTGACCGATAAAAAAATAAAGATAAAAAAGATAAAAAAATTCA CTCCATTAAGAATTAGTGAATAAGGAGAAAATAAATGTTCAATTTAATGT AAAGTGCATACACCATGGACTACCATCAATTGGTCAGTTAAAAGTTGAAA ATGGCTAGTGAACAAGTTGAGCTGGTTTTATCCACACCGAGTTTATTGCG AAATGTGAACCTCGACAGAAGGAGTTGCGAATTCAATCAAAGACCTCACT ACTGTATCAACAAATGTAACATTCACTTGAAAAGACTGGAACAATTTCTA ATTGGCTTCAAAAATGAAGTTTACAAACAAGAAATCAATCTCAAAGGTAC GTCTGCTTTTGTGTTATGGTTTTAAAGTAAAATCTGTGTGATAATGATAC AAAGTATGAATTTTTTNAAGAACTAGCCGCAAGCGTGCAGAGCTTCAACG AAAGCGACAATGTCAATCATCAGATTCGCCTGGAACCCATTACCAGTGGT GCGGAATTGGAGGTATTCACTGACGAATCTCATTCACTTTTCTCGAGTGA AGAAGGTGACAGATCAATCCTGTCAACGGAAATCAGTATGGACAATGCGC ATTCACAGATACCTCAACAACAAATCGCCATATTACAGAATGTCAAAGCA CTGTTGAACCGTTTAGATGAGCAATGTGTGAAAACTAAAGAACAATTACT GAAGGAGCGAGAACGCACTGGCAACCTTCAAGCTCAGATTGATGCGCATG CGTACAGGAGAATTCATGCTCTACCAATGGCTGTGCAAAGAGAACATGAG AAGTGTGCTTATAATATTCAAGAATTGAAATGGCATTGTGCATACGAAGG TCGAAGAATGTCAAGCGTCAAAGAGAAATATCGTATCGCCCAGAAAACCA ACGAAAGAATATTGGAGGAAATCAATTTTGTAAAGGAAAGCAGCCCTTTG ATATCTGAGAAACAGCGAGAAGAAAAAGAATCGATGAAAGTGATCCAACA AAAACAGAACACAGCAGACATCGAACTCAAAGAGGCTAGAAATAACTTAG ATATGATCGAGCGACGTTTCGAACAAACAAAACGCCAAGCGGATCAAGAA GAGAAATATCTGGCTCAACGATTGCTGGCACTGGCTAATGAGCAGATGAC AGATTTACTAGAGCAACAATTTTCATACCTTTAAATTTATGCATTGCATA TTACAGGAACAGAAGTATTGTGGCTGATAAAGGTTTTTCCGGAAGAGAGC CCGTCTTTCACCCGGATCTTGCAAAGTGTTTGTCTTGGTTAATGTTCGGA ACTGTTGACAGAGAAGAACTTGTTATTAGAATCGCTATTATCGCATCTGT CTATTGCTTGAAGAACTTTTCTGAACGTGTGAGTTTTCAAATTCCTTATA TTTCTGTAAATCACATTCCCTGTATTCCATTTTTCTACCGGATTATTGAC CGGGACTGCTCTGACCGGGTCACTGATACAGGGGTGTATTTAAACAATCA TTCTTCATCTTTTATTTTATTTATTTCGTAGTGTATAATGTGGAAAGGTG ATCGGTTAAAGAATGATAAGAAATATTCGATCTTTTTTCGATCGTTTTTT ATTTTAATGATGATTGACTGTATTTGTTTTATCCAGATGACACAAGGTAA CTCAGATCATAGTGCGTCACACTATAAAAGATTGTTTAAAAGCGATTCAA TGGCGTCACTACAGCAGAAGCTCGTTGATGATTCATTGGCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005042XLOC_005042Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009013-exon-sc0000089-1575043694:12333..12641TCONS_00009013-exon-sc0000089-1575043694:12333..12641Clytia hemisphaericaexon
TCONS_00009013-exon-sc0000089-1575043694:10974..11104TCONS_00009013-exon-sc0000089-1575043694:10974..11104Clytia hemisphaericaexon
TCONS_00009013-exon-sc0000089-1575043694:10624..10698TCONS_00009013-exon-sc0000089-1575043694:10624..10698Clytia hemisphaericaexon
TCONS_00009013-exon-sc0000089-1575043694:10360..10441TCONS_00009013-exon-sc0000089-1575043694:10360..10441Clytia hemisphaericaexon
TCONS_00009013-exon-sc0000089-1575043694:10106..10195TCONS_00009013-exon-sc0000089-1575043694:10106..10195Clytia hemisphaericaexon
TCONS_00009013-exon-sc0000089-1575043694:9791..9922TCONS_00009013-exon-sc0000089-1575043694:9791..9922Clytia hemisphaericaexon
TCONS_00009013-exon-sc0000089-1575043694:9170..9333TCONS_00009013-exon-sc0000089-1575043694:9170..9333Clytia hemisphaericaexon
TCONS_00009013-exon-sc0000089-1575043694:8876..9036TCONS_00009013-exon-sc0000089-1575043694:8876..9036Clytia hemisphaericaexon
TCONS_00009013-exon-sc0000089-1575043694:8522..8693TCONS_00009013-exon-sc0000089-1575043694:8522..8693Clytia hemisphaericaexon
TCONS_00009013-exon-sc0000089-1575043694:5800..5905TCONS_00009013-exon-sc0000089-1575043694:5800..5905Clytia hemisphaericaexon
TCONS_00009013-exon-sc0000089-1510915933:12333..12641TCONS_00009013-exon-sc0000089-1510915933:12333..12641Clytia hemisphaericaexon
TCONS_00009013-exon-sc0000089-1510915933:10974..11104TCONS_00009013-exon-sc0000089-1510915933:10974..11104Clytia hemisphaericaexon
TCONS_00009013-exon-sc0000089-1510915933:10624..10698TCONS_00009013-exon-sc0000089-1510915933:10624..10698Clytia hemisphaericaexon
TCONS_00009013-exon-sc0000089-1510915933:10360..10441TCONS_00009013-exon-sc0000089-1510915933:10360..10441Clytia hemisphaericaexon
TCONS_00009013-exon-sc0000089-1510915933:10106..10195TCONS_00009013-exon-sc0000089-1510915933:10106..10195Clytia hemisphaericaexon
TCONS_00009013-exon-sc0000089-1510915933:9791..9922TCONS_00009013-exon-sc0000089-1510915933:9791..9922Clytia hemisphaericaexon
TCONS_00009013-exon-sc0000089-1510915933:9170..9333TCONS_00009013-exon-sc0000089-1510915933:9170..9333Clytia hemisphaericaexon
TCONS_00009013-exon-sc0000089-1510915933:8876..9036TCONS_00009013-exon-sc0000089-1510915933:8876..9036Clytia hemisphaericaexon
TCONS_00009013-exon-sc0000089-1510915933:8522..8693TCONS_00009013-exon-sc0000089-1510915933:8522..8693Clytia hemisphaericaexon
TCONS_00009013-exon-sc0000089-1510915933:5800..5905TCONS_00009013-exon-sc0000089-1510915933:5800..5905Clytia hemisphaericaexon
TCONS_00009013-exon-sc0000089-1491911889:12333..12641TCONS_00009013-exon-sc0000089-1491911889:12333..12641Clytia hemisphaericaexon
TCONS_00009013-exon-sc0000089-1491911889:10974..11104TCONS_00009013-exon-sc0000089-1491911889:10974..11104Clytia hemisphaericaexon
TCONS_00009013-exon-sc0000089-1491911889:10624..10698TCONS_00009013-exon-sc0000089-1491911889:10624..10698Clytia hemisphaericaexon
TCONS_00009013-exon-sc0000089-1491911889:10360..10441TCONS_00009013-exon-sc0000089-1491911889:10360..10441Clytia hemisphaericaexon
TCONS_00009013-exon-sc0000089-1491911889:10106..10195TCONS_00009013-exon-sc0000089-1491911889:10106..10195Clytia hemisphaericaexon
TCONS_00009013-exon-sc0000089-1491911889:9791..9922TCONS_00009013-exon-sc0000089-1491911889:9791..9922Clytia hemisphaericaexon
TCONS_00009013-exon-sc0000089-1491911889:9170..9333TCONS_00009013-exon-sc0000089-1491911889:9170..9333Clytia hemisphaericaexon
TCONS_00009013-exon-sc0000089-1491911889:8876..9036TCONS_00009013-exon-sc0000089-1491911889:8876..9036Clytia hemisphaericaexon
TCONS_00009013-exon-sc0000089-1491911889:8522..8693TCONS_00009013-exon-sc0000089-1491911889:8522..8693Clytia hemisphaericaexon
TCONS_00009013-exon-sc0000089-1491911889:5800..5905TCONS_00009013-exon-sc0000089-1491911889:5800..5905Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:5800..12641 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 1.6794 1.57468 3.72806 4.42755 0 0.349213 0 0 0 0.42004 0 0 0 0 0 0 0 0 0 0 0 1.70363 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009013 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top