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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008852 ID=TCONS_00008852|Name=TCONS_00008852|organism=Clytia hemisphaerica|type=transcript|length=2471bp
ATATAAATAATATGGAAACTGAAGTATAAGCAAAAATGCTTGATGATGCT
TATTTTGATTATGCTTACCataaaattgtttgaaattctGCTCTTTTCCT
CGTGATTTTCCATTTTGCACAAACATCAAAATgtaattttacttttaatt
atTTATAACTATTATTTGATAAGATTATCAGCGTGATGCAGAGATAAGCA
TTTTTATACCAATGAATATAGAAAAGACTCTTATAATTTACATTCACGGT
CTAACTGTGGAATGTAGTGGGGGTCTTAGATTGAAATTTTGCCCATTGGT
GTTACTATAAAAGGTTTGTATCTGACTCTGATGTTTGTGATCATATGAAA
TGTGATCATTACCTAGTTTCCTTTAGTTTCTTTACTACTTGGGCAAAAAG
GGATACGGGGATTTgctgctggtcagggtaccttttttcacctccatGAC
TCCCAgatagggtcgcaaaaacacaaaaatagaaaaatcagtccctcgtt
gGGTACTTTTTTGGGAGAATTTGGAATTTCAggtcactttaaaaaaaaaa
actagtcCCACGTAGGATCAATTTTTCGTAATTCAGCGGCACACCCCGTC
gctcggcaagggtagtaccccctccccgggCTTTACTATTATTGTCCCTC
TCCGTCTTTATTTCCTTACTATATTACTCCGTTTCCTCTTGAACCTTGAA
TCAGCCTCGTAATTGAAATACTATGCAATGAGTGCTACTATGCATAAAGT
TTATAATAATAATTGTTGATACAGAACATATAGAAACCCATAAAGAGAAA
CTTTTTAGAGAGTGAACCTACTACATGACCAAAGTAGATTCAAAAACAAC
GGAGATGTCTACCGAAGCTGTCAATGTCAAGGACTATCAGAATATCGACT
ACAATGATGATAATCGTGGCGatACTGGTCTTGGATTATGTGGCTGGGTT
TTGACCATTTTCTCCCTTCTCATGTTCATTTGTACATTCCCTCTCTCACT
TTTTTTCACACTCAAGATTGTTCAAGAATACGAGCGAGCTGTAATCTTCA
GAGTGGGTCGTCTCGTCAAAGGAGGAGCTCGTGGACCTGGTATCTTCTTC
ATTCTACCATGCATTGATAACTACCTTAAAGTCGATTTACGTGTTGTCTC
ATTTGATGTCCCTCCACAAGAAATTTTAACCAGAGACAGTGTCACCATTA
CTGTAGATGCCGTCGCTTATTTCAGAATCTCAAATCCTATCTCGTCTGTC
TGTAATATCGAGGATGCTCAAAGATCCACAAAACTGTTAGCTGCAACTAC
TCTGAGAAACGAGTTGGGTACGAAAAATCTCAGTGAAGTTCTTTTGGAGA
GGGATACAATAAGCCATTCAATCCAACAAATTTTGGATGCAGCTACGGAT
CCATGGGGAGTGAAAGTTGAACGTGTTGAGATTAAAGATGTCCGCCTTCC
ACAAATGTTACAAAGAGCTATGGCTGCTGAAGCTGAAGCCTCCAGAGAAG
CCAAAGCTAAgGTGATTGCTGCTGAAGGAGAGATGAATGCTGCTCGTGCT
TTGAAAGAAGCTTCTGACGTCATTTCCGAATCACCACAAGCTTTACAACT
CCGTTATTTGCAAACCTTACAAACCATTTCGGCTGAAAAGAATTCCACCA
TCATTTTCCCGTTACCCATTGACATGTTATCGAAAGCACTTAGCAAATGA
GAAGTGTACGAAGTGTTGTAGGCGCTCCTGGAAAAGACATGCAATTTAAT
TGTGATGTAGAGGGGTGAGAATTATTGAGTTTCAAGCATGGAAGTTTGTT
ACCTTGCATGAAAATTCACAACGCATGCGCGCAAGTGATTTTATGCATCG
GAGTTCCTCTTATTTTTAAAACCAAAACCTTCTTTTTTTGTGTATTTCCT
AGTTTCATATTCAGGAATTAATTTAAagcttttcttttaaaaaaagtgaa
gaaggaaTTTCTTCGGAtatgaattttgattttcttttcgattattaaca
tcttttttttcatttatatcTTATTCAATGGAAAAATTAATTTACGTCCC
GTTGAGAGATTTCAAGGTTATGAATTCAATATCGAATATTTTTTCATCGG
GACAAGTATGCATGGGAAACATTTGCTTAAATTAAcagtttttttaactc
gtgaAATATTATTTTGGTCACTTTAAATTTTGgttgtcttttatttttgt
aaatatcatTTGGTACTGTTTAGTAGTAACTTTCGTTGCTTCATCATGCA
CTCGGGAAGATTGTTTTTTTCCTGGCTAATCGATGAAAATAACATTAGAA
TCTTTAGTGATTTTTTACTCGCTTTCCCTATTCCCTTACAGTTTTTTATA
GTAATTTATTAATTGATATTACTGAAAAATTTATTACtaatcattttgtt
ttgttacttTGTAGCTAAAAATTATACATAAATTGATCACACTTATTGTA
CGATAAATAAATTTAATTAGG Run BLAST on NCBI transcript from alignment at sc0000088:424167..428293+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008852 ID=TCONS_00008852|Name=TCONS_00008852|organism=Clytia hemisphaerica|type=transcript|length=4127bp|location=Sequence derived from alignment at sc0000088:424167..428293+ (Clytia hemisphaerica)
ATATAAATAATATGGAAACTGAAGTATAAGCAAAAATGCTTGATGATGCT
TATTTTGATTATGCTTACCataaaattgtttgaaattctGCTCTTTTCCT
CGTGATTTTCCATTTTGCACAAACATCAAAATgtaattttacttttaatt
atTTATAACTATTATTTGATAAGATTATCAGCGTGATGCAGAGATAAGCA
TTTTTATACCAATGAATATAGAAAAGACTCTTATAATTTACATTCACGGT
CTAACTGTGGAATGTAGTGGGGGTCTTAGATTGAAATTTTGCCCATTGGT
GTTACTATAAAAGGTTTGTATCTGACTCTGATGTTTGTGATCATATGAAA
TGTGATCATTACCTAGTTTCCTTTAGTTTCTTTACTACTTGGGCAAAAAG
GGATACGGGGATTTgctgctggtcagggtaccttttttcacctccatGAC
TCCCAgatagggtcgcaaaaacacaaaaatagaaaaatcagtccctcgtt
gGGTACTTTTTTGGGAGAATTTGGAATTTCAggtcactttaaaaaaaaaa
actagtcCCACGTAGGATCAATTTTTCGTAATTCAGCGGCACACCCCGTC
gctcggcaagggtagtaccccctccccgggCTTTACTATTATTGTCCCTC
TCCGTCTTTATTTCCTTACTATATTACTCCGTTTCCTCTTGAACCTTGAA
TCAGCCTCGTAATTGAAATACTATGCAATGAGTGCTACTATGCATAAAGT
TTATAATAATAATTGTTGATACAGAACATATAGAAACCCATAAAGAGAAA
CTTTTTAGAGAGTGAACCTACTACATGACCAAAGTAGATTCAAAAACAAC
GGAGATGTCTACCGAAGCTGTCAATGTCAAGGACTATCAGAATATCGACT
ACAATGATGATAATCGTGGCGGTAAGAAAAAAAAcctctaaaaatgttct
aaaggTAGCCAGACACCGGAGTCATTTAACTCATTGatcaattttttata
ttatagggGTTGAGCCGACCTCCTGAGATACGTCACTGTATACTGGCTGT
GACGAGTACTGAATAGCTCGTTCGTCTTTTTGTAAAATTATACTCTTTTA
GCAAGGCATAAAAAGctctgaaaaaattgaaataaacgCCAATGGCTCAA
ATTATGAAATTCTAGAAGTCTTTCGCTTTCAcacttcttttctttgttta
gatACTGGTCTTGGATTATGTGGCTGGGTTTTGACCATTTTCTCCCTTCT
CATGTTCATTTGTACATTCCCTCTCTCACTTTTTTTCACACTCAAGGTAA
GTCACTTTCTCTATATgaaattctgaaatatttggTCATTCAAAGGAAAC
TGTTGGCTACAATTTCATATACTTATTTACTCTTTCCTCGGAGAATTTTA
TTACCGAGTGGAGTACAATATGGTGTCATCGTCACAAACTAGATGGGGGT
TCCCGGTTTGAATTCCCGCACTTTCTCATGCCCTTTCACTTTCAGCCGGC
TGGCCGTGGGGCTTTGTATATCTTTAACATGAAGCTAACAAGTTTCCTAT
GAATAAAGAGACAAGTTGTCATTAACTTGGGAGAAAAATAATATGTGGAT
TCAATTAGACAGGCACGATTGAATCGGCAAAAGATTTTAAGCGATATCtt
agccattttagttttttttgaaagaatcttGGAATACTAGTAATACCAAC
TCCATTGTTCTTATGATTGTTAGAAATCTTTATCTTCGTCCTTTTTTTTA
CATACAAAATGCAATATGTTTGTGTATTTTGGTATTTCTTCATGTGTATT
TTTCATAGATTGTTCAAGAATACGAGCGAGCTGTAATCTTCAGAGTGGGT
CGTCTCGTCAAAGGAGGAGCTCGTGGACCTGGTATCTTCTTCATTCTACC
ATGCATTGATAACTACCTTAAAGTCGATTTACGTGTTGTCTCATTTGATG
TCCCTCCACAAGAAATTTTAACCAGAGACAGTGTCACCATTACTGTAGAT
GCCGTCGCTTATTTCAGAATCTCAAATCCTATCTCGTCTGTCTGTAATAT
CGAGGATGCTCAAAGATCCACAAAACTGTTAGCTGCAACTACTCTGAGAA
ACGAGTTGGGTACGAAAAATCTCAGTGAAGTTCTTTTGGAGAGGGATACA
ATAAGCCATTCAATCCAACAAATTTTGGATGCAGCTACGGATCCATGGGG
AGTGAAAGTTGAACGTGTTGAGATTAAAGATGTCCGCCTTCCACAAATGT
TACAAAGAGCTATGGCTGCTGAAGCTGAAGCCTCCAGAGAAGCCAAAGCT
AAggtatcaaaaatatatatagatATATTACATATTGGTATTAAACTTTA
CAGACTCCTAGTTAGTTTTGAGGACCATAGCTACAAGAAGCAAGGAGGTT
GTAAATGTAAAGGCCTTTCCGGATGATAACCAAAGCCAAAGCAACATTTT
ACttctcaagatttcaaaaaactctttgTGTCTCTTGTTTATGCTTTTTT
AACTTTCAATAATAAACATATCGATTATTACTGTATATATAGAAAGATTt
tttaagaataactttttcTTGAGATATCTGATACCTCGATTTGCTGATTC
TTCTTCCTTCTATTACGAGGGAAACTAGCTAGACGCAGAAGCTTTACTAC
ATAGGAATCAGTATAACTCTCACGTTTATcccttcgtagtacactctgtg
cacataatctgtttgataaaaaaattcccgtacggtaACCTATGCGataa
agtatgatttataaatagcaaaacTGCCCTTTTTCCCCCAGCACTCCATC
GCagtggtcggtttgaaaaatcccaaatgagaaaagacaatgataacaga
ccctctacggcaatgaattttgatattagccgtagatactgggtcctGTG
TACAGACGGCAGTATAACTTGAACCTCAGCTCGAACAATCTGCGTTCACC
GTGACTCTATTtctactaccttatcggggaaattttcgtcggggaaaatt
ttcgtcgggaaaaaatattcgtcacttgctggtagttggtaaacgcatta
aggccggggaaaattttcgtctgggaaaaatattcgtcacttggccaata
tttcgtcatttttccccgacgaagttttccccgataaggtattctaTCAC
TACTCTTTCTTTCTTAGGTGATTGCTGCTGAAGGAGAGATGAATGCTGCT
CGTGCTTTGAAAGAAGCTTCTGACGTCATTTCCGAATCACCACAAGCTTT
ACAACTCCGTTATTTGCAAACCTTACAAACCATTTCGGCTGAAAAGAATT
CCACCATCATTTTCCCGTTACCCATTGACATGTTATCGAAAGCACTTAGC
AAATGAGAAGTGTACGAAGTGTTGTAGGCGCTCCTGGAAAAGACATGCAA
TTTAATTGTGATGTAGAGGGGTGAGAATTATTGAGTTTCAAGCATGGAAG
TTTGTTACCTTGCATGAAAATTCACAACGCATGCGCGCAAGTGATTTTAT
GCATCGGAGTTCCTCTTATTTTTAAAACCAAAACCTTCTTTTTTTGTGTA
TTTCCTAGTTTCATATTCAGGAATTAATTTAAagcttttcttttaaaaaa
agtgaagaaggaaTTTCTTCGGAtatgaattttgattttcttttcgatta
ttaacatcttttttttcatttatatcTTATTCAATGGAAAAATTAATTTA
CGTCCCGTTGAGAGATTTCAAGGTTATGAATTCAATATCGAATATTTTTT
CATCGGGACAAGTATGCATGGGAAACATTTGCTTAAATTAAcagtttttt
taactcgtgaAATATTATTTTGGTCACTTTAAATTTTGgttgtcttttat
ttttgtaaatatcatTTGGTACTGTTTAGTAGTAACTTTCGTTGCTTCAT
CATGCACTCGGGAAGATTGTTTTTTTCCTGGCTAATCGATGAAAATAACA
TTAGAATCTTTAGTGATTTTTTACTCGCTTTCCCTATTCCCTTACAGTTT
TTTATAGTAATTTATTAATTGATATTACTGAAAAATTTATTACtaatcat
tttgttttgttacttTGTAGCTAAAAATTATACATAAATTGATCACACTT
ATTGTACGATAAATAAATTTAATTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008852-exon-sc0000088-1491911889:424167..425087 | TCONS_00008852-exon-sc0000088-1491911889:424167..425087 | Clytia hemisphaerica | exon |
| TCONS_00008852-exon-sc0000088-1510915933:424167..425087 | TCONS_00008852-exon-sc0000088-1510915933:424167..425087 | Clytia hemisphaerica | exon |
| TCONS_00008852-exon-sc0000088-1575043694:424167..425087 | TCONS_00008852-exon-sc0000088-1575043694:424167..425087 | Clytia hemisphaerica | exon |
| TCONS_00008852-exon-sc0000088-1491911889:425368..425462 | TCONS_00008852-exon-sc0000088-1491911889:425368..425462 | Clytia hemisphaerica | exon |
| TCONS_00008852-exon-sc0000088-1510915933:425368..425462 | TCONS_00008852-exon-sc0000088-1510915933:425368..425462 | Clytia hemisphaerica | exon |
| TCONS_00008852-exon-sc0000088-1575043694:425368..425462 | TCONS_00008852-exon-sc0000088-1575043694:425368..425462 | Clytia hemisphaerica | exon |
| TCONS_00008852-exon-sc0000088-1491911889:425975..426469 | TCONS_00008852-exon-sc0000088-1491911889:425975..426469 | Clytia hemisphaerica | exon |
| TCONS_00008852-exon-sc0000088-1510915933:425975..426469 | TCONS_00008852-exon-sc0000088-1510915933:425975..426469 | Clytia hemisphaerica | exon |
| TCONS_00008852-exon-sc0000088-1575043694:425975..426469 | TCONS_00008852-exon-sc0000088-1575043694:425975..426469 | Clytia hemisphaerica | exon |
| TCONS_00008852-exon-sc0000088-1491911889:427334..428293 | TCONS_00008852-exon-sc0000088-1491911889:427334..428293 | Clytia hemisphaerica | exon |
| TCONS_00008852-exon-sc0000088-1510915933:427334..428293 | TCONS_00008852-exon-sc0000088-1510915933:427334..428293 | Clytia hemisphaerica | exon |
| TCONS_00008852-exon-sc0000088-1575043694:427334..428293 | TCONS_00008852-exon-sc0000088-1575043694:427334..428293 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000088 | supercontig | sc0000088:424167..428293 + |
Blast
BLAST of TCONS_00008852 vs. Swiss-Prot (Human)
Match: STOM (Erythrocyte band 7 integral membrane protein OS=Homo sapiens GN=STOM PE=1 SV=3) HSP 1 Score: 342.428 bits (877), Expect = 2.537e-110 Identity = 174/251 (69.32%), Postives = 217/251 (86.45%), Query Frame = 3
Query: 927 GLGLCGWVLTIFSLLMFICTFPLSLFFTLKIVQEYERAVIFRVGRLVKGGARGPGIFFILPCIDNYLKVDLRVVSFDVPPQEILTRDSVTITVDAVAYFRISNPISSVCNIEDAQRSTKLLAATTLRNELGTKNLSEVLLERDTISHSIQQILDAATDPWGVKVERVEIKDVRLPQMLQXXXXXXXXXXXXXXXXVIAAEGEMNAARALKEASDVISESPQALQLRYLQTLQTISAEKNSTIIFPLPIDML 1679
GLG CGW+L FS L + TFP+S++ +KI++EYERA+IFR+GR+++GGA+GPG+FFILPC D+++KVD+R +SFD+PPQEILT+DSVTI+VD V Y+R+ N +V NI +A +T+LLA TTLRN LGTKNLS++L +R+ I+H++Q LD ATD WG+KVERVEIKDV+LP LQRAMAAEAEASREA+AKVIAAEGEMNA+RALKEAS VI+ESP ALQLRYLQTL TI+AEKNSTI+FPLPIDML
Sbjct: 26 GLGPCGWILVAFSFLFTVITFPISIWMCIKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQSTLDDATDAWGIKVERVEIKDVKLPVQLQRAMAAEAEASREARAKVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDML 276
The following BLAST results are available for this feature:
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