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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008738 ID=TCONS_00008738|Name=TCONS_00008738|organism=Clytia hemisphaerica|type=transcript|length=3038bp
TTGGTTACGAAGAATTTGCCCAAGTCCCAAGCCCATGTGCTTCAGTCTCA
TCCCTCTCCAACCCACCATCCCCATACCATAACCAACCATCACCTGCTTA
CAACCCACCCTCACCATACAGCAATACATCAGCTGGATCCCCATACAACA
GCACCTCTGGATCACCTTACAATGACAACACCGCCCCATTGTCACCCTAC
AGCGCCCCAGCTTCACCCTATGGTTCCCAACAAGGATCACCAGCCCAATT
CAacaatcaacaacaacaaccacaacaaGTTGACAACTTCAACAACAGCC
AACAACAAGGACAATGGTGGATGCAACAAGAACAACGCATGATGCAAGAA
CAAGAATGGTGCATGCCAAACAAATTCAACACCCTTGCCCCACAAATGAC
ACAATTGAAACAAAATGTAGCTGGACAAGAGCTTTTCCTTCAAGGAttac
aaaaatatcaagaacaacaacaacagttgaTCGAAAAGATGCAAGCTCAA
CTCTTAGCTAAACAACAAGCCCAACAAATGCAACAACAACAAGctcagca
acaacaacaacaagttGCTCAACCAACTCCATTCAAGATGCAACAACCAA
GCCAAGTCAACATGAAATGGCCTGGAGTTTCTGAAAACTCAGCTTTCCAA
CAACCACAAAAATTCCCAGCCTGTTCAATGGCTAATACCTACCCAATCCA
ACCCATCAACCCACGACCAATCAACCGTGCTGGTTTGAGCATCTTGAAAG
AAAAACGTAATGACCCAACAAAGAAATGCAAAGTTCCATTGGCTGAACGT
CCATATGCTTGCCCTGTGGATAACTGCCCACGACGATTCTCACGATCTGA
TGAATTGACCCGTCACATGAGAACTCATACTGgccaaaaacCATTCCAAT
GCCGAATCTGCATGCGAAACTTTTCCCGATCTGATCATTTGACAACCCAC
ATCAGAACTCACACTGgagAAAAACCATTCGCTTGCGATTGTTGCGGACG
TCGATTCGCCCGCTCGGACGAACGTCGCCGACACATGAAGATTCACTTAC
GTGAGCAACAAAAACGTgaagaagaaatgaagaaagctATGCAACAACAA
GCTGTTAACAACCAAATGATGAATGTCAATGGTGCTGAAGCTATCTTTGT
TCAAGCTTAAATCAGAAAATCAGAATtagttcaatttctttttaagtttt
ttttttctcttcattttttTAAGCTGTTTacaattttgcatttttttttt
atgtcaTTGCGTACCCCATATCCCCGGATTTGATTCGTGCTATTGATTGT
TCACTGTGCTGGTCTATAAGGTGACTTTCAACAGGTTTTGTGTATATAAT
TTTTCATCATCACCCAATATGTTTGGATATTATGAATTACTTTAAAATGA
TAGAAATGTAATGAAGCCTTAACCAGGGTCTAATCACATGTTTTATCAAT
ACCGTGTTTTTTcggttttaatttttatttaattttttgtttatatagcC
TCTATACCGACTCACTATCTGAAAACACttgagctaaaattttcaccaCT
CACCACCTTTTTTCGAGAAGAATTGTATTTTGTAGGTTTTTCCatccttt
tttttgacaaaaaaattaaactgcTGAAAACACTGAATGACTGAAAATTT
TATCAGAgttttacaaaatcaaaattttatgtgtcagtctaaattttttt
aaagattttatgatATTTAATGTAATGTTTTATCTTCCGTGTtgtaatat
atatatattatatattattataGTATATGTTACAGGCCTAAGCCCACGAG
AGACAGATAAGGGAGAATGATAAGGCCGAAATCTGTCCAAAGTGGGTGTT
CTCCCTCTGATGAACACACTTTATGAAGGTGAACGTTGTATTTTATTGAC
ACATTTGTAATCTTTAGAAATTTATTATGATCATTTTATGacggtttttt
tttaaactttgtggaatttttcggcttttagtatttttttgtagttttct
ttttttttcattttattttcctaTGAGCTTGTATTTTGAAGCTTTCTCAC
ATTGAACCTCCATCTTAGACTAGTAGCCGAGCGAGAGCGGAGCGTGTTTT
TGTTTTAGCGTAAGGCGAACATTGCCATCGGTTGGGATCCCATCTAAAGC
GCACATGGATTTGAACCGCCTTACCTAAGCAAGATCTCTCTTTTCTTACG
CTCGTACTTCACCGAAAGAGAGGCTTAAGATACAGGTCTCTTAAAGCGCA
TCTTTAAGCATAAAACACCCTTTCAAATAATATTTACTGTAttattattt
acaaaaaatatgtAGGACACATCGTTGAAGTTACTTTTGCTGGTCAAATG
ATAACTCAACGaaataaaagttcaaaaaataaaaagtcgataaattgtca
tttatttttgtttactaAAACTCGTACCTAGTCCCTTGTTACCAAGGGAA
ctttaaacaataaattttcGATCATGATAAGCCATTTTATAATAGGCTCC
TATTGAGCGAAGGCGTCGTGATTTCTACTGATAAATAATTATCTTGTTTG
TCCTCCAAACGAACGAATGAAGGATTAGATCTCTATGTTTTACTTCGtac
cttttttaggttttgagTTATCGATCAGAATGTTTTGATAGTGTTGACGC
CACTTCCATCTCTCTTGTAACATGCAAGggtttattcatgatattcatga
cgtaatgttttctacgggaataccccggttttagccagtagtggcaaatt
taaactagacaaaagttgtacaaaattttccactacttgcaaaaaccggg
gtctttccgtagaaaacattacgtcataaatatcatgattgtttttttct
ggGTATGACTGAGACTGTAGAGTACGGTTTTGACATTAATTTACTTTGAG
GTCAATGTATCAAAATGTGCCTACTGACAATCTTCTACCCATGGCCACTA
GCATACATAGTTTTTCATTATACTTCTAATGCAATACATTAATATCAAGA
TCAATCcaatggaattcaaattaaCCAGCAGCCGAAAG Run BLAST on NCBI transcript from alignment at sc0000087:486938..490902+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008738 ID=TCONS_00008738|Name=TCONS_00008738|organism=Clytia hemisphaerica|type=transcript|length=3965bp|location=Sequence derived from alignment at sc0000087:486938..490902+ (Clytia hemisphaerica)
TTGGTTACGAAGAATTTGCCCAAGTCCCAAGCCCATGTGCTTCAGTCTCA
TCCCTCTCCAACCCACCATCCCCATACCATAACCAACCATCACCTGCTTA
CAACCCACCCTCACCATACAGCAATACATCAGCTGGATCCCCATACAACA
GCACCTCTGGATCACCTTACAATGACAACACCGCCCCATTGTCACCCTAC
AGCGCCCCAGCTTCACCCTATGGTTCCCAACAAGGATCACCAGCCCAATT
CAacaatcaacaacaacaaccacaacaaGTTGACAACTTCAACAACAGCC
AACAACAAGGACAATGGTGGATGCAACAAGAACAACGCATGATGCAAGAA
CAAGAATGGTGCATGCCAAACAAATTCAACACCCTTGCCCCACAAATGAC
ACAATTGAAACAAAATGTAGCTGGACAAGAGCTTTTCCTTCAAGGAttac
aaaaatatcaagaacaacaacaacagttgaTCGAAAAGATGCAAGCTCAA
CTCTTAGCTAAACAACAAGCCCAACAAATGCAACAACAACAAGctcagca
acaacaacaacaagttGCTCAACCAACTCCATTCAAGATGCAACAACCAA
GCCAAGTCAACATGAAATGGCCTGGAGTTTCTGAAAACTCAGCTTTCCAA
CAACCACAAAAATTCCCAGCCTGTTCAATGGCTAATACCTACCCAATCCA
ACCCATCAACCCACGACCAATCAACCGTGCTGGTTTGAGCATCTTGAAAG
AAAAACGTAATGACCCAACAAAGAAATGCAAAGTTCCATTGGCTGAACGT
CCATATGCTTGCCCTGTGGATAACTGCCCACGACGATTCTCACGATCTGA
TGAATTGACCCGTCACATGAGAACTCATACTGGTCAGTATATTACATTTT
CTCTAATAGGCTATTTCTACTCCAACTTACTCCAAGTACATgcacgaaat
ttttaagccttcTGAAGTTCTTAACTATTTGAGTCTTAaggttaaaaatg
ttcttaacatgttcttattttcatgaTAGTAGATGTTCATTTCCAAACCT
TCTGTATATAGAGAcagcatttgttttgaaaattcacAAATAGACATTAT
GTTTCAAATTGTTAAATTATTGTTATACATATAGAAGTTCCACCATTTTA
ATCGAAATATTTCTTCGACAatttttcaggccaaaaacCATTCCAATGCC
GAATCTGCATGCGAAACTTTTCCCGATCTGATCATTTGACAACCCACATC
AGAACTCACACTGGTAAGCATTTCATTCTAACTGTTAACTGGAGATTCCT
ATTCTAGGGACGATAATCTGGAGGGGGTCTAAAGTGGTGGGCGATTCGAT
CTTTCGAAATAACATGGATGACTAAAGAAGGGAAAAATGGAATACATGTC
TGAAATCTGTTggtgaaaattgagtagaaCTGATTCAGCAATTTTCTGAT
TCGACTATGTATCATTTCAACGAATTTTGACACATAGTCTGATCCTTGAT
ATTAGATATGTTTTCTCAGAAAATGTTATTTCGAAATGTCTCATCATAAG
AAAGATAATGTTGACTTTTTTTTCTACTTTGAACAATAAACATATCTGAC
GTCAACTCAACTAACATTTAGATTGCTCATAATCGCTGATTTTATAATCC
ATGTATGAACTAGTATCAAAAAGGTTTGTTTAAATTTTATCCTTGATTGA
TAATTTCCTGTTTCGAGAGTTTATATCCCTACTCTAAAAAACTCAAACTT
TCTTAGAAAGAGTATTGCCTCTTTAAGATCTTGATAACTATTATGTGATT
CCCTGAAAATATTCTCCACTTAAGCTTCCGAGAAAATATCCTTGAACCac
ttcaaaaatatactaatgttttcatttttctttttttttataggagAAAA
ACCATTCGCTTGCGATTGTTGCGGACGTCGATTCGCCCGCTCGGACGAAC
GTCGCCGACACATGAAGATTCACTTACGTGAGCAACAAAAACGTgaagaa
gaaatgaagaaagctATGCAACAACAAGCTGTTAACAACCAAATGATGAA
TGTCAATGGTGCTGAAGCTATCTTTGTTCAAGCTTAAATCAGAAAATCAG
AATtagttcaatttctttttaagttttttttttctcttcattttttTAAG
CTGTTTacaattttgcattttttttttatgtcaTTGCGTACCCCATATCC
CCGGATTTGATTCGTGCTATTGATTGTTCACTGTGCTGGTCTATAAGGTG
ACTTTCAACAGGTTTTGTGTATATAATTTTTCATCATCACCCAATATGTT
TGGATATTATGAATTACTTTAAAATGATAGAAATGTAATGAAGCCTTAAC
CAGGGTCTAATCACATGTTTTATCAATACCGTGTTTTTTcggttttaatt
tttatttaattttttgtttatatagcCTCTATACCGACTCACTATCTGAA
AACACttgagctaaaattttcaccaCTCACCACCTTTTTTCGAGAAGAAT
TGTATTTTGTAGGTTTTTCCatccttttttttgacaaaaaaattaaactg
cTGAAAACACTGAATGACTGAAAATTTTATCAGAgttttacaaaatcaaa
attttatgtgtcagtctaaatttttttaaagattttatgatATTTAATGT
AATGTTTTATCTTCCGTGTtgtaatatatatatattatatattattataG
TATATGTTACAGGCCTAAGCCCACGAGAGACAGATAAGGGAGAATGATAA
GGCCGAAATCTGTCCAAAGTGGGTGTTCTCCCTCTGATGAACACACTTTA
TGAAGGTGAACGTTGTATTTTATTGACACATTTGTAATCTTTAGAAATTT
ATTATGATCATTTTATGacggtttttttttaaactttgtggaatttttcg
gcttttagtatttttttgtagttttctttttttttcattttattttccta
TGAGCTTGTATTTTGAAGCTTTCTCACATTGAACCTCCATCTTAGACTAG
TAGCCGAGCGAGAGCGGAGCGTGTTTTTGTTTTAGCGTAAGGCGAACATT
GCCATCGGTTGGGATCCCATCTAAAGCGCACATGGATTTGAACCGCCTTA
CCTAAGCAAGATCTCTCTTTTCTTACGCTCGTACTTCACCGAAAGAGAGG
CTTAAGATACAGGTCTCTTAAAGCGCATCTTTAAGCATAAAACACCCTTT
CAAATAATATTTACTGTAttattatttacaaaaaatatgtAGGACACATC
GTTGAAGTTACTTTTGCTGGTCAAATGATAACTCAACGaaataaaagttc
aaaaaataaaaagtcgataaattgtcatttatttttgtttactaAAACTC
GTACCTAGTCCCTTGTTACCAAGGGAActttaaacaataaattttcGATC
ATGATAAGCCATTTTATAATAGGCTCCTATTGAGCGAAGGCGTCGTGATT
TCTACTGATAAATAATTATCTTGTTTGTCCTCCAAACGAACGAATGAAGG
ATTAGATCTCTATGTTTTACTTCGtaccttttttaggttttgagTTATCG
ATCAGAATGTTTTGATAGTGTTGACGCCACTTCCATCTCTCTTGTAACAT
GCAAGggtttattcatgatattcatgacgtaatgttttctacgggaatac
cccggttttagccagtagtggcaaatttaaactagacaaaagttgtacaa
aattttccactacttgcaaaaaccggggtctttccgtagaaaacattacg
tcataaatatcatgattgtttttttctggGTATGACTGAGACTGTAGAGT
ACGGTTTTGACATTAATTTACTTTGAGGTCAATGTATCAAAATGTGCCTA
CTGACAATCTTCTACCCATGGCCACTAGCATACATAGTTTTTCATTATAC
TTCTAATGCAATACATTAATATCAAGATCAATCcaatggaattcaaatta
aCCAGCAGCCGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008738-exon-sc0000087-1491911889:486938..487819 | TCONS_00008738-exon-sc0000087-1491911889:486938..487819 | Clytia hemisphaerica | exon |
| TCONS_00008738-exon-sc0000087-1510915933:486938..487819 | TCONS_00008738-exon-sc0000087-1510915933:486938..487819 | Clytia hemisphaerica | exon |
| TCONS_00008738-exon-sc0000087-1575043694:486938..487819 | TCONS_00008738-exon-sc0000087-1575043694:486938..487819 | Clytia hemisphaerica | exon |
| TCONS_00008738-exon-sc0000087-1491911889:488117..488200 | TCONS_00008738-exon-sc0000087-1491911889:488117..488200 | Clytia hemisphaerica | exon |
| TCONS_00008738-exon-sc0000087-1510915933:488117..488200 | TCONS_00008738-exon-sc0000087-1510915933:488117..488200 | Clytia hemisphaerica | exon |
| TCONS_00008738-exon-sc0000087-1575043694:488117..488200 | TCONS_00008738-exon-sc0000087-1575043694:488117..488200 | Clytia hemisphaerica | exon |
| TCONS_00008738-exon-sc0000087-1491911889:488831..490902 | TCONS_00008738-exon-sc0000087-1491911889:488831..490902 | Clytia hemisphaerica | exon |
| TCONS_00008738-exon-sc0000087-1510915933:488831..490902 | TCONS_00008738-exon-sc0000087-1510915933:488831..490902 | Clytia hemisphaerica | exon |
| TCONS_00008738-exon-sc0000087-1575043694:488831..490902 | TCONS_00008738-exon-sc0000087-1575043694:488831..490902 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000087 | supercontig | sc0000087:486938..490902 + |
Blast
BLAST of TCONS_00008738 vs. Swiss-Prot (Human)
Match: EGR1 (Early growth response protein 1 OS=Homo sapiens GN=EGR1 PE=1 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 5.883e-48 Identity = 80/98 (81.63%), Postives = 86/98 (87.76%), Query Frame = 3
Query: 756 RNDPTKKCKVPLAERPYACPVDNCPRRFSRSDELTRHMRTHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDCCGRRFARSDERRRHMKIHL 1049
R P + K P ERPYACPV++C RRFSRSDELTRH+R HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD CGR+FARSDER+RH KIHL
Sbjct: 322 RKYPNRPSKTPPHERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 419
The following BLAST results are available for this feature:
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