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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008707 ID=TCONS_00008707|Name=TCONS_00008707|organism=Clytia hemisphaerica|type=transcript|length=1286bp
CTTAAATTTACCATACAAATATTGCGAGCGGACTATAAACTACATTCATG
TATGTGAAATAATGTCCTGAGAATCATTTTGCATTGTTAAATCAGAGAAT
AGCACAACGGcaattcgaattcttttcattttctgacTTAATGTCAATAC
TCATCCACTGTAGAGTAGCCCACCTGGCTTCAGGTTTCCCCCACTTTCTC
TCCATTTTCCGATATTCTTTCCttaaataattatgaaaatttctgTCCAT
TGCTAAATTGTCACAATAACTCACTTTTGCTTCTGGCCGTTCGAGAACAC
TTTCCACGGAGTTAATTGGCTTTGAATAATTATCTGTTTTATCATCTTTA
TCGTTGTCTCCTTTTTCTCTTTGGGAAGGATGAGCAAAAGGATTAAATCG
TTTTGGAGTATTCCAAATGTTATGAATGAATCTGACGTGGTTTGACATTT
CCTTCAAATACTTCCCAGAATATCCTTCAAGTAAATTGATCTCATCAACA
AAGTAAGATGGTAGATATCCTTTGGATAAACTTTCAGCAAGGCGCTCATA
CAACATGATGACAACTTGACAATAACTTTTTCTCTCTTCCCAATCTTTCC
AGTGTTCTGGTGGAGTTTGTTCCAACATGTGTAACATTGTTGTTTTGAGG
AGATACGAAGAAATATGCCGGCCTGTCTCTGGATCATCTATTTGTTTAAG
GTTTGCATAATAAATGAATTTTGCCAACAAATAACATTTGTCTTGAAATT
CGGATCTCTTTCCGGCTAAAATGACTTCAGCtttggaaaaagaaattctc
cacTCGTCATTTCTGTCGGATCCAGGTGTTGATTTCAAAACCAAATGACA
TTTATTGTCAGCAATTTCTTTGATGATTTCAGGGGATGGCCAATAACGTT
CCCGTTCAAACCAAGGATGCACAAAGTCCGGCCAAAAGTCAAGTTCAATG
CAGGGAATACAATCTAACTCGACATGTAGACCTTCATCAATATCAGTGTA
GATATTCGGTGCGCCATCCTCGTATTTTCCGTGTCCCTGGACTTTCTGGA
AATGATGAAGTAACTGACTATCCAAATGCTCTTTATCCGACTTATTTTCA
GGAACTAAACTTGAACATTCAGGATCTATACATGATATAAATTCCTCGTT
CCATCTCAAATGATAAAAGCCGACATTTTCCATTGGTGTTAAAATCTTCT
GACGTATCTCTTCTCCGATGCATGCTAGAGGTTTCATAATATCGATTTCG
ATATTTGGTTTATTTTCATACACGCCTCGGCATATG Run BLAST on NCBI transcript from alignment at sc0000087:244756..246098+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008707 ID=TCONS_00008707|Name=TCONS_00008707|organism=Clytia hemisphaerica|type=transcript|length=1343bp|location=Sequence derived from alignment at sc0000087:244756..246098+ (Clytia hemisphaerica)
CTTAAATTTACCATACAAATATTGCGAGCGGACTATAAACTACATTCATG
TATGTGAAATAATGTCCTGAGAATCATTTTGCATTGTTAAATCAGAGAAT
AGCACAACGGcaattcgaattcttttcattttctgacTTAATGTCAATAC
TCATCCACTGTAGAGTAGCCCACCTGGCTTCAGGTTTCCCCCACTTTCTC
TCCATTTTCCGATATTCTTTCCttaaataattatgaaaatttctgTCCAT
TGCTAAATTGTCACAATAACTCACTTTTGCTTCTGGCCGTTCGAGAACAC
TTTCCACGGAGTTAATTGGCTTTGAATAATTATCTGTTTTATCATCTTTA
TCGTTGTCTCCTTTTTCTCTTTGGGAAGGATGAGCAAAAGGATTAAATCG
TTTTGGAGTATTCCAAATGTTATGAATGAATCTGACGTGGTTTGACATTT
CCTTCAAATACTTCCCAGAATATCCTTCAAGTAAATTGATCTCATCAACA
AAGTAAGATGGTAGATATCCTTTGGATAAACTTTCAGCAAGGCGCTCATA
CAACATGATGACAACTTGACAATAACTTTTTCTCTCTTCCCAATCTTTCC
AGTGTTCTGGTGGAGTTTGTTCCAACATGTGNCTTTTTCTCTCTTCCCAA
TCTTTCCAGTGTTCTGGTGGCGTTTGTTCCAACATGTGTAACATTGTTGT
TTTGAGGAGATACGAAGAAATATGCCGGCCTGTCTCTGGATCATCTATTT
GTTTAAGGTTTGCATAATAAATGAATTTTGCCAACAAATAACATTTGTCT
TGAAATTCGGATCTCTTTCCGGCTAAAATGACTTCAGCtttggaaaaaga
aattctccacTCGTCATTTCTGTCGGATCCAGGTGTTGATTTCAAAACCA
AATGACATTTATTGTCAGCAATTTCTTTGATGATTTCAGGGGATGGCCAA
TAACGTTCCCGTTCAAACCAAGGATGCACAAAGTCCGGCCAAAAGTCAAG
TTCAATGCAGGGAATACAATCTAACTCGACATGTAGACCTTCATCAATAT
CAGTGTAGATATTCGGTGCGCCATCCTCGTATTTTCCGTGTCCCTGGACT
TTCTGGAAATGATGAAGTAACTGACTATCCAAATGCTCTTTATCCGACTT
ATTTTCAGGAACTAAACTTGAACATTCAGGATCTATACATGATATAAATT
CCTCGTTCCATCTCAAATGATAAAAGCCGACATTTTCCATTGGTGTTAAA
ATCTTCTGACGTATCTCTTCTCCGATGCATGCTAGAGGTTTCATAATATC
GATTTCGATATTTGGTTTATTTTCATACACGCCTCGGCATATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008707-exon-sc0000087-1491911889:244756..245381 | TCONS_00008707-exon-sc0000087-1491911889:244756..245381 | Clytia hemisphaerica | exon |
| TCONS_00008707-exon-sc0000087-1510915933:244756..245381 | TCONS_00008707-exon-sc0000087-1510915933:244756..245381 | Clytia hemisphaerica | exon |
| TCONS_00008707-exon-sc0000087-1575043694:244756..245381 | TCONS_00008707-exon-sc0000087-1575043694:244756..245381 | Clytia hemisphaerica | exon |
| TCONS_00008707-exon-sc0000087-1491911889:245439..246098 | TCONS_00008707-exon-sc0000087-1491911889:245439..246098 | Clytia hemisphaerica | exon |
| TCONS_00008707-exon-sc0000087-1510915933:245439..246098 | TCONS_00008707-exon-sc0000087-1510915933:245439..246098 | Clytia hemisphaerica | exon |
| TCONS_00008707-exon-sc0000087-1575043694:245439..246098 | TCONS_00008707-exon-sc0000087-1575043694:245439..246098 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000087 | supercontig | sc0000087:244756..246098 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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