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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008690 ID=TCONS_00008690|Name=TCONS_00008690|organism=Clytia hemisphaerica|type=transcript|length=1896bpRun BLAST on NCBI protein sequence of TCONS_00008690-protein >TCONS_00008690-protein ID=TCONS_00008690-protein|Name=TCONS_00008690-protein|organism=Clytia hemisphaerica|type=polypeptide|length=631bp QNLGKMPMQKTYKRYASLGSFGVVGSTRSNLLMINQIPYLSHSKKENTTCRun BLAST on NCBI transcript from alignment at sc0000087:29598..40234+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008690 ID=TCONS_00008690|Name=TCONS_00008690|organism=Clytia hemisphaerica|type=transcript|length=10637bp|location=Sequence derived from alignment at sc0000087:29598..40234+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000087:29598..40234+ >TCONS_00008690 ID=TCONS_00008690|Name=TCONS_00008690|organism=Clytia hemisphaerica|type=CDS|length=43539bp|location=Sequence derived from alignment at sc0000087:29598..40234+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008690 vs. Swiss-Prot (Human)
Match: WDR3 (WD repeat-containing protein 3 OS=Homo sapiens GN=WDR3 PE=1 SV=1) HSP 1 Score: 573.933 bits (1478), Expect = 0.000e+0 Identity = 305/651 (46.85%), Postives = 435/651 (66.82%), Query Frame = 2
Query: 17 MPMQKTYKRYASLGSFGVVGSTRSNLLMINQIPYLSHSKKENTTCCVTAALESVIIWDVRRGEKIAFLKGNEDEVTSIAHSKKTSLIAVGYSNGTIKLWDLKNNTSDVLFSGHRSAISCLCFEKSGTKLISGSTDTDIIVWDIVGETGLYRLKGHKGMITDCVFMTTHNVMISSSKDMLVKFWDLDNQHCFLTIVGHKTEVWKLCLLNNETRLITGSGDAELRSYEIK----------------------------------EASDKXXXXXXXXXXXXXILRGGKGRVISLHLEEKGQYLACHGVDSTLDLFEIVDEDDXXXXXXXXXXXXXXXXXXMPEAEQIDEDKILVEREVTDEIKKVQSFRMSQKLRSAAISYNNTKEEIKVLSMFINNSFGYYKIDLSALPTKCQLQ-SLISNMGHRSDVRTVGFNSDATLIMTASGESVKIWNRSTQKCIRTMDSDYCLCSMFVPGERHVIVGTKTGKLQLFDISSGILLEAVDAHEEAVWSIALSPDKNGFVSGSADHEVKFWEFDLIIDEEYSSMGKRLSISHTQTLKMTEEVLALKYSPDGRFLAVSLLDSTVKVFFADTLKFFLSLYGHKFPVLCMDISLDSTLLITGSADKNIKIWGLDFGDCHKSIFAHDDSITSIQ 1864
M + K Y RY + FGV+GS + N++ + + E A E V IWD+R+GEKI L+G + EVT + S +AVGY +G+I+++ L + +V F+GH++AI+ L +++ G +L SGS DTDIIVWD++ E+GLYRLKGHK IT +F+ N++++S KD +VK+WDLD QHCF T+VGH+TEVW L LL+ E RLITG+ D+ELR ++I E + +LSC GSI+R G+ RV++L +++ G+ LACHG DS L+LF I+ + +IQK + K+ KK KK K + ++ ++ VE + DEI++V + + S K++S + ++ E+K + + NN Y ++ S LPT ++ S I+ GHRSDVRT+ F+SD +++A+ +S+KIWNRST +CIRTM +Y LCS FVPG+R V++GTKTGKLQL+D++SG LLE +DAH+ A+WS++LSPD+ GFV+G AD VKFW+F+L+ DE +S KRLS+ T+TL++ E+VL + YSP+ + LAVSLLD TVK+F+ DTLKFFLSLYGHK PV+CMDIS D L+ TGSAD+N+KIWGLDFGDCHKS+FAHDDS+ +Q
Sbjct: 1 MGLTKQYLRYVASAVFGVIGSQKGNIVFVTL-------RGEKGRYVAVPACEHVFIWDLRKGEKILILQGLKQEVTCLCPSPDGLHLAVGYEDGSIRIFSLLSGEGNVTFNGHKAAITTLKYDQLGGRLASGSKDTDIIVWDVINESGLYRLKGHKDAITQALFLREKNLLVTSGKDTMVKWWDLDTQHCFKTMVGHRTEVWGLVLLSEEKRLITGASDSELRVWDIAYLQEIEDPEEPDPKKIKGSSPGIQDTLEAEDGAFETDEAPEDRILSCRKAGSIMREGRDRVVNLAVDKTGRILACHGTDSVLELFCILSKKEIQKKMDKKMKKARKKAKLHSSKGEEEDPEVNVEMSLQDEIQRVTNIKTSAKIKSFDL-IHSPHGELKAVFLLQNNLVELYSLNPS-LPTPQPVRTSRITIGGHRSDVRTLSFSSDNIAVLSAAADSIKIWNRSTLQCIRTMTCEYALCSFFVPGDRQVVIGTKTGKLQLYDLASGNLLETIDAHDGALWSMSLSPDQRGFVTGGADKSVKFWDFELVKDE--NSTQKRLSVKQTRTLQLDEDVLCVSYSPNQKLLAVSLLDCTVKIFYVDTLKFFLSLYGHKLPVICMDISHDGALIATGSADRNVKIWGLDFGDCHKSLFAHDDSVMYLQ 640 The following BLAST results are available for this feature:
BLAST of TCONS_00008690 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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