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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000291 ID=TCONS_00000291|Name=TCONS_00000291|organism=Clytia hemisphaerica|type=transcript|length=1472bp
ATGAACATCACACGACCGTTGAATTGTGGATCCTTACTCAACATTATTGC
CCTTTGCTTGAGTATGTGTGTCTTTCCAGCGCCCGGACCACCCTTAATCA
AAAGTTTCGTATATTGGGCGTGATCTCCAATAAATACTGGTAATTGTTCT
TTTGAGTGAAATAAAATATTGTGGCTGGTACAAAGTGTGTCGATTGCATC
GCTGATATATTTGACCCAGTTGGTTGTTGTGATTGGTGCTATTTGGTCTT
TCTTCGAAATGTGTACAGCAAAAATGATCAAACGCAAAACCTTTATGAGA
TGCTCGACGGATGGTAGAAATGGTATCGGAACAGTTTGTTCAGGAAATCG
TTTGAATATCGATGATAACCATAATTCTATGTCAGTGTTTATGTCAATGT
AATGTTGAGTTTCGAAAGACAGGGTATTCTTCCCGACAGAAATCACTGGG
AAAAATGTCCAGTCGGGACCAAACTGATCACCTAATCTTTCTTGGAATAG
CGTGTGATATTTTTCGATTTGGTCAAAAgcggtgtcattgagttgtctcT
TTATTTCGATACCAATGACGAGTTTTCTTGGCCAAGAGAAAATGACCAGG
TCAAATTCTTGATGTttctttttgctgacgtcagttAAAAAACAAACCGA
TTGAAGGATAACTGTATCTTTTAATAAAGTCTCCTCTCTCATAGACAATA
ATTTATCGAAGAACATTTGTTCATAAGCCTCGCCACGATGTGATAACACC
aattcaaaaaaccataacaagTTTGAATCCGTGCATGGGTTTTGTTTAAT
CAGTTTCTCTATTCCAGGTTTTAGATTCTTTTTACCGTTCACATTTCTCA
AAGTTTGTAGATAATTTCGTAGAGTGGCTTCAAGCTCTGCTCCTGGTTTC
TTAGAAGCCAGCTCAGCTATGCAGCCTTTaatgaagatatttgtttcTAA
AATTGAAGGCGGTAAATTGACCTCTTTTCCATGCAATTCCTGGGCGACAA
GATATGACATTTTAACGTTTAGGATCCACTTGTCGAAATCAGCAGCATTT
ATTTCTTTAGCATCATCAGTTGATAATCCTTGTTGTTGGACGAAAGTTTT
TAACTGTTCTGTGAACCAATAATTGGGAAATTCATTCGATAAGTTAGCCA
ACGTTGTCAGAAATGTTTTTTCGAATTCGTAATCCAAAAGAGGAGCTGCA
GATTTACTTGTATATTGATTTGAACAGAACACTGGAGGTATGAATACACA
TTCGTGTTTTGTGTTATCAACGAGAGAAGAATCGCCATATTCTCTCTGAA
GTAAATAATCAGCTGCAGTTATTGGGTCGGTGAATATTTGGCCGTTGCCG
AGATTAAACTGTTTAGTTTGATGCTGTAAAGTTTTTCTAGAGTATCTAAG
AACTTGTTGGTGTAGTGATTTACCCAGAGTGCATTTCGATGGGTCGATCA
TTTTCGGTTTCATATCCATGAC Run BLAST on NCBI protein sequence of TCONS_00000291-protein >TCONS_00000291-protein ID=TCONS_00000291-protein|Name=TCONS_00000291-protein|organism=Clytia hemisphaerica|type=polypeptide|length=490bp
VMDMKPKMIDPSKCTLGKSLHQQVLRYSRKTLQHQTKQFNLGNGQIFTDP
ITAADYLLQREYGDSSLVDNTKHECVFIPPVFCSNQYTSKSAAPLLDYEF
EKTFLTTLANLSNEFPNYWFTEQLKTFVQQQGLSTDDAKEINAADFDKWI
LNVKMSYLVAQELHGKEVNLPPSILETNIFIKGCIAELASKKPGAELEAT
LRNYLQTLRNVNGKKNLKPGIEKLIKQNPCTDSNLLWFFELVLSHRGEAY
EQMFFDKLLSMREETLLKDTVILQSVCFLTDVSKKKHQEFDLVIFSWPRK
LVIGIEIKRQLNDTAFDQIEKYHTLFQERLGDQFGPDWTFFPVISVGKNT
LSFETQHYIDINTDIELWLSSIFKRFPEQTVPIPFLPSVEHLIKVLRLII
FAVHISKKDQIAPITTTNWVKYISDAIDTLCTSHNILFHSKEQLPVFIGD
HAQYTKLLIKGGPGAGKTHILKQRAIMLSKDPQFNGRVMF Run BLAST on NCBI transcript from alignment at sc0000001:658205..659676 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000291 ID=TCONS_00000291|Name=TCONS_00000291|organism=Clytia hemisphaerica|type=transcript|length=1472bp|location=Sequence derived from alignment at sc0000001:658205..659676 (Clytia hemisphaerica)
GTCATGGATATGAAACCGAAAATGATCGACCCATCGAAATGCACTCTGGG
TAAATCACTACACCAACAAGTTCTTAGATACTCTAGAAAAACTTTACAGC
ATCAAACTAAACAGTTTAATCTCGGCAACGGCCAAATATTCACCGACCCA
ATAACTGCAGCTGATTATTTACTTCAGAGAGAATATGGCGATTCTTCTCT
CGTTGATAACACAAAACACGAATGTGTATTCATACCTCCAGTGTTCTGTT
CAAATCAATATACAAGTAAATCTGCAGCTCCTCTTTTGGATTACGAATTC
GAAAAAACATTTCTGACAACGTTGGCTAACTTATCGAATGAATTTCCCAA
TTATTGGTTCACAGAACAGTTAAAAACTTTCGTCCAACAACAAGGATTAT
CAACTGATGATGCTAAAGAAATAAATGCTGCTGATTTCGACAAGTGGATC
CTAAACGTTAAAATGTCATATCTTGTCGCCCAGGAATTGCATGGAAAAGA
GGTCAATTTACCGCCTTCAATTTTAgaaacaaatatcttcattAAAGGCT
GCATAGCTGAGCTGGCTTCTAAGAAACCAGGAGCAGAGCTTGAAGCCACT
CTACGAAATTATCTACAAACTTTGAGAAATGTGAACGGTAAAAAGAATCT
AAAACCTGGAATAGAGAAACTGATTAAACAAAACCCATGCACGGATTCAA
ActtgttatggttttttgaattGGTGTTATCACATCGTGGCGAGGCTTAT
GAACAAATGTTCTTCGATAAATTATTGTCTATGAGAGAGGAGACTTTATT
AAAAGATACAGTTATCCTTCAATCGGTTTGTTTTTTaactgacgtcagca
aaaagaaACATCAAGAATTTGACCTGGTCATTTTCTCTTGGCCAAGAAAA
CTCGTCATTGGTATCGAAATAAAgagacaactcaatgacaccgcTTTTGA
CCAAATCGAAAAATATCACACGCTATTCCAAGAAAGATTAGGTGATCAGT
TTGGTCCCGACTGGACATTTTTCCCAGTGATTTCTGTCGGGAAGAATACC
CTGTCTTTCGAAACTCAACATTACATTGACATAAACACTGACATAGAATT
ATGGTTATCATCGATATTCAAACGATTTCCTGAACAAACTGTTCCGATAC
CATTTCTACCATCCGTCGAGCATCTCATAAAGGTTTTGCGTTTGATCATT
TTTGCTGTACACATTTCGAAGAAAGACCAAATAGCACCAATCACAACAAC
CAACTGGGTCAAATATATCAGCGATGCAATCGACACACTTTGTACCAGCC
ACAATATTTTATTTCACTCAAAAGAACAATTACCAGTATTTATTGGAGAT
CACGCCCAATATACGAAACTTTTGATTAAGGGTGGTCCGGGCGCTGGAAA
GACACACATACTCAAGCAAAGGGCAATAATGTTGAGTAAGGATCCACAAT
TCAACGGTCGTGTGATGTTCAT Coding sequence (CDS) from alignment at sc0000001:658205..659676 >TCONS_00000291 ID=TCONS_00000291|Name=TCONS_00000291|organism=Clytia hemisphaerica|type=CDS|length=1470bp|location=Sequence derived from alignment at sc0000001:658205..659676 (Clytia hemisphaerica)
GTCATGGATATGAAACCGAAAATGATCGACCCATCGAAATGCACTCTGGG
TAAATCACTACACCAACAAGTTCTTAGATACTCTAGAAAAACTTTACAGC
ATCAAACTAAACAGTTTAATCTCGGCAACGGCCAAATATTCACCGACCCA
ATAACTGCAGCTGATTATTTACTTCAGAGAGAATATGGCGATTCTTCTCT
CGTTGATAACACAAAACACGAATGTGTATTCATACCTCCAGTGTTCTGTT
CAAATCAATATACAAGTAAATCTGCAGCTCCTCTTTTGGATTACGAATTC
GAAAAAACATTTCTGACAACGTTGGCTAACTTATCGAATGAATTTCCCAA
TTATTGGTTCACAGAACAGTTAAAAACTTTCGTCCAACAACAAGGATTAT
CAACTGATGATGCTAAAGAAATAAATGCTGCTGATTTCGACAAGTGGATC
CTAAACGTTAAAATGTCATATCTTGTCGCCCAGGAATTGCATGGAAAAGA
GGTCAATTTACCGCCTTCAATTTTAgaaacaaatatcttcattAAAGGCT
GCATAGCTGAGCTGGCTTCTAAGAAACCAGGAGCAGAGCTTGAAGCCACT
CTACGAAATTATCTACAAACTTTGAGAAATGTGAACGGTAAAAAGAATCT
AAAACCTGGAATAGAGAAACTGATTAAACAAAACCCATGCACGGATTCAA
ActtgttatggttttttgaattGGTGTTATCACATCGTGGCGAGGCTTAT
GAACAAATGTTCTTCGATAAATTATTGTCTATGAGAGAGGAGACTTTATT
AAAAGATACAGTTATCCTTCAATCGGTTTGTTTTTTaactgacgtcagca
aaaagaaACATCAAGAATTTGACCTGGTCATTTTCTCTTGGCCAAGAAAA
CTCGTCATTGGTATCGAAATAAAgagacaactcaatgacaccgcTTTTGA
CCAAATCGAAAAATATCACACGCTATTCCAAGAAAGATTAGGTGATCAGT
TTGGTCCCGACTGGACATTTTTCCCAGTGATTTCTGTCGGGAAGAATACC
CTGTCTTTCGAAACTCAACATTACATTGACATAAACACTGACATAGAATT
ATGGTTATCATCGATATTCAAACGATTTCCTGAACAAACTGTTCCGATAC
CATTTCTACCATCCGTCGAGCATCTCATAAAGGTTTTGCGTTTGATCATT
TTTGCTGTACACATTTCGAAGAAAGACCAAATAGCACCAATCACAACAAC
CAACTGGGTCAAATATATCAGCGATGCAATCGACACACTTTGTACCAGCC
ACAATATTTTATTTCACTCAAAAGAACAATTACCAGTATTTATTGGAGAT
CACGCCCAATATACGAAACTTTTGATTAAGGGTGGTCCGGGCGCTGGAAA
GACACACATACTCAAGCAAAGGGCAATAATGTTGAGTAAGGATCCACAAT
TCAACGGTCGTGTGATGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000291-exon-sc0000001-1491911889:658205..659676 | TCONS_00000291-exon-sc0000001-1491911889:658205..659676 | Clytia hemisphaerica | exon |
| TCONS_00000291-exon-sc0000001-1510915933:658205..659676 | TCONS_00000291-exon-sc0000001-1510915933:658205..659676 | Clytia hemisphaerica | exon |
| TCONS_00000291-exon-sc0000001-1575043694:658205..659676 | TCONS_00000291-exon-sc0000001-1575043694:658205..659676 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:658205..659676 . |
Blast
The following BLAST results are available for this feature:
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