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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000720 ID=TCONS_00000720|Name=TCONS_00000720|organism=Clytia hemisphaerica|type=transcript|length=1989bp
TATTACTATTCAGTGATACTTGACAATTCTAAATACACCCCTGCATCAAA
TTCATATCCATATTCTCTTCCCAAAGATTAGACTTACTTAGCAGCTTTAC
TGCTAACCAAAACGACTGATCCGATTATTTCAATACTTTGAAAGATCCaa
gtttaagtaatgtttttactttctttttattcaggaAAAATGGATCAAAC
AAAGCGGAGTCAATTTGTCAACATCACAATCAATACGGACTGCTTTCACT
AAACTCAAGAAGTGCGCAGCGTAAGTTACATTGTTTGTATGGAACAATTA
TCTCATATGTTGAAATCTAGATCGATTTTGTGCTCCCCATCAATTAGTGT
GCGTTACTTGTCACCGTAACTTTGGCAATTTATCTACCGTCTCTTGAGCG
ACGGTCAATTTGTCTAGTTTCAAGTTTAACAAAATCTACCGTACCACTAG
CCTcgatccctgcgtattatcatcGTTTTGATTCTGACTGGGAGCGCTAG
ATAatacaccagggtattctctggcctCAATCAGCAagaacgtaaataaa
gcctgggatacacaggGACGAAGTTGCCGTACCCACGGATCTTTACACTC
ATATAATAGtaactttaattttcattatttatttAGTATGCCACCGCCAA
TGTTACCGATTGTTATCATTATGAGCTGCTCAGGGAGAGCGTGTTGCTTG
AGAGTcacgaagaagaaaataagagccacttttttattaaatttaacaAT
GTATAAAATAATATACGCTACGAAATACATACGTCATTAAAAAAAgtggc
caaaaataaaaatgaggccattgatcattaaaatcaaattaataaaatat
AGAGTGTAACTTCGTTGGTCTTTCTTTTTGGTTTCTCTTTCATTCTGGGC
GTTGTTTTCATTCTCTCAAACACACACACCACTGTCAATgccgccccggt
ggagctttttccTTCAGTGTAGATGGAAATTTCTATCTAATCGTAGTGTC
CCGATTGAGATAGAAACTCTATATTCCAGCTCGAAGTTTacagtgggaat
ggttttgcGGTGCAATTTTCCACCATACTGAGGGTAAAGTCATTTGGTTC
TTTTCAAGTGGGCGGGTTAAACTTTCAGGTTATTTTCTCCACTGACGACG
ATTtctttgctaaattttccagtggggtggGGGGCTCCACTGGATCTGGC
TTCCGGATTCTCGCCCTCGCCAATGATGATAATGAATGTGTATCATCATT
ACGATATTACGACGGTGGAAAATGTAGAACATACACGTCTCATCTGGATA
TGATCGCAATTGTGTTcccatgaaaaatgaaaaagaaaaagaagaaatag
cGAGAGAAGAATTGTTGTGGTTCATCTAATCTAGACCACCGGAGAACTAG
AAATAAGCACGGAGTGTCAAGATTAGGGTTCTGAAACATCGTTTATCTCA
CGATGCCCGTATTCTAAGTTTTATGTTCAGCATCCGAAAATCTAAAGTAT
GGCCGCGCGGACGAATTCCTTCGCCACAACCTTGCGGCTGTTACATCAAA
GCATAAGAAGAACGATTCTTGTTTTCCAAATTAGAATACaaagacaataa
aaaaagattacCTGGTACATCttattgaatttgattcatCTTCTTAATAT
TGattctaaacaaaaagaatggtgttaattgattgtaaaaccatattgaa
aaatcttaaattttctgattttccaccccgtgcaaatgcacagagttcca
aaaaAACAGTGTATTTACACCGGGTTTTCGCGCTACTTTCGATTTCGACC
CGTTGCAAATGCAACGTAGCGGaccccgtgcaaatgcaaggatttacCTG
ACTGACTAAATGTTGAATTTTACCTAAAATGCAGTTTTACTATTAAAATA
ATTATGTTTAAGcatcaaaatatttcaagtcTTCAAATTGCCTTTTTTAG
GCGCCCGGAGGCCGCCCGGACTGGCCCGGGCGGCATACG Run BLAST on NCBI transcript from alignment at sc0000005:902180..904168+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000720 ID=TCONS_00000720|Name=TCONS_00000720|organism=Clytia hemisphaerica|type=transcript|length=1989bp|location=Sequence derived from alignment at sc0000005:902180..904168+ (Clytia hemisphaerica)
TATTACTATTCAGTGATACTTGACAATTCTAAATACACCCCTGCATCAAA
TTCATATCCATATTCTCTTCCCAAAGATTAGACTTACTTAGCAGCTTTAC
TGCTAACCAAAACGACTGATCCGATTATTTCAATACTTTGAAAGATCCaa
gtttaagtaatgtttttactttctttttattcaggaAAAATGGATCAAAC
AAAGCGGAGTCAATTTGTCAACATCACAATCAATACGGACTGCTTTCACT
AAACTCAAGAAGTGCGCAGCGTAAGTTACATTGTTTGTATGGAACAATTA
TCTCATATGTTGAAATCTAGATCGATTTTGTGCTCCCCATCAATTAGTGT
GCGTTACTTGTCACCGTAACTTTGGCAATTTATCTACCGTCTCTTGAGCG
ACGGTCAATTTGTCTAGTTTCAAGTTTAACAAAATCTACCGTACCACTAG
CCTcgatccctgcgtattatcatcGTTTTGATTCTGACTGGGAGCGCTAG
ATAatacaccagggtattctctggcctCAATCAGCAagaacgtaaataaa
gcctgggatacacaggGACGAAGTTGCCGTACCCACGGATCTTTACACTC
ATATAATAGtaactttaattttcattatttatttAGTATGCCACCGCCAA
TGTTACCGATTGTTATCATTATGAGCTGCTCAGGGAGAGCGTGTTGCTTG
AGAGTcacgaagaagaaaataagagccacttttttattaaatttaacaAT
GTATAAAATAATATACGCTACGAAATACATACGTCATTAAAAAAAgtggc
caaaaataaaaatgaggccattgatcattaaaatcaaattaataaaatat
AGAGTGTAACTTCGTTGGTCTTTCTTTTTGGTTTCTCTTTCATTCTGGGC
GTTGTTTTCATTCTCTCAAACACACACACCACTGTCAATgccgccccggt
ggagctttttccTTCAGTGTAGATGGAAATTTCTATCTAATCGTAGTGTC
CCGATTGAGATAGAAACTCTATATTCCAGCTCGAAGTTTacagtgggaat
ggttttgcGGTGCAATTTTCCACCATACTGAGGGTAAAGTCATTTGGTTC
TTTTCAAGTGGGCGGGTTAAACTTTCAGGTTATTTTCTCCACTGACGACG
ATTtctttgctaaattttccagtggggtggGGGGCTCCACTGGATCTGGC
TTCCGGATTCTCGCCCTCGCCAATGATGATAATGAATGTGTATCATCATT
ACGATATTACGACGGTGGAAAATGTAGAACATACACGTCTCATCTGGATA
TGATCGCAATTGTGTTcccatgaaaaatgaaaaagaaaaagaagaaatag
cGAGAGAAGAATTGTTGTGGTTCATCTAATCTAGACCACCGGAGAACTAG
AAATAAGCACGGAGTGTCAAGATTAGGGTTCTGAAACATCGTTTATCTCA
CGATGCCCGTATTCTAAGTTTTATGTTCAGCATCCGAAAATCTAAAGTAT
GGCCGCGCGGACGAATTCCTTCGCCACAACCTTGCGGCTGTTACATCAAA
GCATAAGAAGAACGATTCTTGTTTTCCAAATTAGAATACaaagacaataa
aaaaagattacCTGGTACATCttattgaatttgattcatCTTCTTAATAT
TGattctaaacaaaaagaatggtgttaattgattgtaaaaccatattgaa
aaatcttaaattttctgattttccaccccgtgcaaatgcacagagttcca
aaaaAACAGTGTATTTACACCGGGTTTTCGCGCTACTTTCGATTTCGACC
CGTTGCAAATGCAACGTAGCGGaccccgtgcaaatgcaaggatttacCTG
ACTGACTAAATGTTGAATTTTACCTAAAATGCAGTTTTACTATTAAAATA
ATTATGTTTAAGcatcaaaatatttcaagtcTTCAAATTGCCTTTTTTAG
GCGCCCGGAGGCCGCCCGGACTGGCCCGGGCGGCATACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000720-exon-sc0000005-1491911889:902180..904168 | TCONS_00000720-exon-sc0000005-1491911889:902180..904168 | Clytia hemisphaerica | exon |
| TCONS_00000720-exon-sc0000005-1510915933:902180..904168 | TCONS_00000720-exon-sc0000005-1510915933:902180..904168 | Clytia hemisphaerica | exon |
| TCONS_00000720-exon-sc0000005-1575043694:902180..904168 | TCONS_00000720-exon-sc0000005-1575043694:902180..904168 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:902180..904168 + |
Blast
The following BLAST results are available for this feature:
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