TCONS_00000925 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000925
Unique NameTCONS_00000925
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length417

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000925 ID=TCONS_00000925|Name=TCONS_00000925|organism=Clytia hemisphaerica|type=transcript|length=417bp
GTTAGTTCGATAAGAGTTACATTGGTCTGATGACAGACAGAAGTGCAGCA
TGTacaacaaaaagctaaaaaacgGGGAATATGTATTTAATTTATAATTA
CCTTCTAAATAAATCTATAGTACAGTATGTGTATAATGGTTACATTGTTT
TGAATTCCCTTTGTATATTTTCTTCTATATGAATACTTGTCACTTGGATG
ACTCTCTAATTTACTTAATAAATGTAAAAACtataaaatcacttaaaaac
aCAGTGGaataaaaaaagactttattcAGATCTTTATTCGCGCTTTCCAA
TTTTCCCTCGCTTcaaatctaccatttttgttctGAGTACGAACAAAGCT
CTCATTCTATATCAAGCTGTATGCTACCGGATTATTTACAGAGTTTTGCT
TCAGAAGCAAGGCAAAA
Run BLAST on NCBI

transcript from alignment at sc0000005:782338..782754

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000925 ID=TCONS_00000925|Name=TCONS_00000925|organism=Clytia hemisphaerica|type=transcript|length=417bp|location=Sequence derived from alignment at sc0000005:782338..782754 (Clytia hemisphaerica)
TTTTGCCTTGCTTCTGAAGCAAAACTCTGTAAATAATCCGGTAGCATACA
GCTTGATATAGAATGAGAGCTTTGTTCGTACTCagaacaaaaatggtaga
tttgAAGCGAGGGAAAATTGGAAAGCGCGAATAAAGATCTgaataaagtc
tttttttattCCACTGtgtttttaagtgattttataGTTTTTACATTTAT
TAAGTAAATTAGAGAGTCATCCAAGTGACAAGTATTCATATAGAAGAAAA
TATACAAAGGGAATTCAAAACAATGTAACCATTATACACATACTGTACTA
TAGATTTATTTAGAAGGTAATTATAAATTAAATACATATTCCCcgttttt
tagctttttgttgtACATGCTGCACTTCTGTCTGTCATCAGACCAATGTA
ACTCTTATCGAACTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000550XLOC_000550Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000925-exon-sc0000005-1491911889:782338..782754TCONS_00000925-exon-sc0000005-1491911889:782338..782754Clytia hemisphaericaexon
TCONS_00000925-exon-sc0000005-1510915933:782338..782754TCONS_00000925-exon-sc0000005-1510915933:782338..782754Clytia hemisphaericaexon
TCONS_00000925-exon-sc0000005-1575043694:782338..782754TCONS_00000925-exon-sc0000005-1575043694:782338..782754Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:782338..782754 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.09359	5.32252	2.89685	1.32259	2.99023	0.54529	1.53503	0.821185	0.718664	0.534109	0	0.227192	0.113438	0.35342	0.581118	1.03938	0	0.918682	0	0.189734	1.81404	0.965265	3.52022	4.62279	0.183129	0.653754	0.23388	0.499206	2.83973	4.82205
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00000925 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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