TCONS_00008348 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008348
Unique NameTCONS_00008348
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length745

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008348 ID=TCONS_00008348|Name=TCONS_00008348|organism=Clytia hemisphaerica|type=transcript|length=745bp
ggcaattctttATTAAAAGTGTAAAGTAACAtaaattttatgttcaaata
ccaaaatcaatttttttgactatggtcagaacCCTTAACTGTGCAAATCG
ATCAATGGCTCAGGCATTCTGATTTCTAaatacaaaaaagtgaaaaatga
ttatggAAGGTAGATACTTTATCCGTAATCCTAAAAGGTCTCTGTGGTTA
TGAGAAGTGTCTATAATGATCTTCGAGCTCCTCAACTACAAACACTGCAA
AGGGTTGTTAATAGTTTTTAACcattttgatataattttatgtagattat
ttatttttgtgCACCGCTTGCATATAGAAATATTTGCACTTGATTTTTAC
ATGTTTTATCATATTctttttcgtttaaaaattttcagttaattagaaaa
aaagagaaatttctCTCTCGAAAAAAGAAGCGCACGTTCCCAAGCTTTTT
TTAGACCCAACGGCATTGCATTGACACGTGCTCAACCCTAGTTAGCAGCC
CAAAATGAATTATTTCCCCTTTAAAAACTGACGTTAAGAAATGTTATAGT
ACCTATTTTATCGTTATTCATCAATATGACAACCTTGGCCTTAAGAAGTC
ACTTGAAAATTTATCGATGTAGACGACAAATCAGTTTCGTGACGCCGAAA
GTGTTGTCATCGTTAGAATAAGCTTTGAATTGAAACAACGACCGATGACG
TGTTGATCCGTGTTGGTTTTTGTAGGTACAAAACAACTAATAGAA
Run BLAST on NCBI

transcript from alignment at sc0000084:691309..693479-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008348 ID=TCONS_00008348|Name=TCONS_00008348|organism=Clytia hemisphaerica|type=transcript|length=2171bp|location=Sequence derived from alignment at sc0000084:691309..693479- (Clytia hemisphaerica)
GGCAATTCTTTATTAAAAGTGTAAAGTAACATAAATTTTATGTTCAAATA
CCAAAATCAATTTTTTTGACTATGGTCAGAACCCTTAACTGTGCAAATCG
ATCAATGGCTCAGGCATTCTGATTTCTAAATACAAAAAAGTGAAAAATGA
TTATGGAAGGTAGATACTTTATCCGTAATCCTAAAAGGTCTCCGTGGTTA
TGTGAAGTGTCCTTTTATTTATTTTGTGGCCCCTATAATGATCTTCGAGC
TCCTCAACTATATACAAACACTGCAAGGGGTTGTTAATAGTTTTTAACCA
TTTTGATATAATTTTATGTAGATTATTTATTTTTGTGCACCGCTTGCATA
TAGAAATTGCACTTGATTTTTACATGTTTTATCATATTCTTTTTCGTTTA
AAAATTTTCAGTTAAATAGAAAAAAAGGGAAATTTCTCTCTCGACAAAAG
AAGCGCACGTTCCCAAGCTTTTTTTAGACTCAACGGCATTGCATTGACAC
GTGCTCAACCCTAGTTAGAAGCCCAGAATGAATTATTTCCCCTTAAAAAA
CTGACGTTAAGAAATGTTATAGTATTTTATCGTTATTCATCAATATGACA
ACCTTGGCCTTAAGAAGTCACTTGAAAATTTATCGATGTAGACGACAAAT
CAGTTTTCGTGACGCCGAAAATGTTGTCATCGTTAGAATAAGCTTTGAAT
TGAAACAACGACCGATGACGTGTTGATCCGTGTTGGTTTTTGTAGGTACA
AAACAACTAATAGAAAACATATATTCTTTTAAATTAAAAACTTCGGGAAA
TAGTCTCGTGAAAACGTCAATGATATTAGATTGATGAAATCTCTAAATCT
AAATCCCTAACTAAGGGTTGGATCTCCAAACTTTGGATTTGACATACCTG
TCAATCTCACAATTTTTTGGCTGAAAACTCTGAAAGTTATGGGGAAATAG
CAAATACTCTTAGGTTCAAAATAAACGNAGAGTTAACTCTACTTCTACAT
CAATTCTTTTGACGCACTTGTTGTTCGCCTAATAGGAAACCTTGATTAGT
TTTAATAAATCCTTTTGGATTTGATATCTCTAGGATGTTTTTAATATGTA
AGCTTTCAAAGCTAAAGTCGTACTTTTTCATACAACGAGGTCGGTGCCCT
ATCATCAAATTGAAGACAAGTTCCGAACATATTTTACGTGAATGAAGCTC
ACCTCTTCCTATCGTTCCGTAACTTTCGGTATAAAGCTCAAAAGAAGCGT
ATGAATGTGGGGATTTCGGAAAGTACATGTTCAAAGATTTAAATTCTACC
AATGTCAAGATACCGACCAAAAACTTATTTTGACGTTATGAAATACGTCA
AAAAAAGACACGTCAAAAGGAAAGGGATAACTTAAACTCTTATCGCAATT
AATCACCGAATCCTGACTGAAGACGCTGTCTTTTGAATTACTTACGAAAA
GGAACAGTAGGAAGCGGTAGTAAAACGCGAGTTTTGTTTGAATTTGGCCT
TAACTGTGAGAATCGATCAATGGCGTATAAATATGCTTCTAAATACAAAA
AAGTGAAAAATGATTATGGAAGGTAGATACTTTATCCATAATCCTAAAAG
GTCTCTGTCTCAGGTCTCTGTGGTTATGAGAAGTGTCTATAATGATCTTC
GAGCTCCTCAACTACAAACACTGCAAAGGGTTGTTAATAGTTTTTAACCA
TTTTGATATAATTTTATGTAGATTATTTATTTTTGTGCACCGCTTGCATA
TAGAAATATTTGCACTTGATTTTTACATGTTTTATCATATTCTTTTTCGT
TTAAAAATTTTCAGTTAATTAGAAAAAAAGAGAAATTTCTCTCTCGAAAA
AAGAAGCGCACGTTCCCAAGCTTTTTTTAGACCCAACGGCATTGCATTGA
CACGTGCTCAACCCTAGTTAGCAGCCCAAAATGAATTATTTCCCCTTTAA
AAACTGACGTTAAGAAATGTTATAGTACCTATTTTATCGTTATTCATCAA
TATGACAACCTTGGCCTTAAGAAGTCACTTGAAAATTTATCGATGTAGAC
GACAAATCAGTTTCGTGACGCCGAAAGTGTTGTCATCGTTAGAATAAGCT
TTGAATTGAAACAACGACCGATGACGTGTTGATCCGTGTTGGTTTTTGTA
GGTACAAAACAACTAATAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004679XLOC_004679Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008348-exon-sc0000084-1575043694:693293..693479TCONS_00008348-exon-sc0000084-1575043694:693293..693479Clytia hemisphaericaexon
TCONS_00008348-exon-sc0000084-1575043694:691309..691866TCONS_00008348-exon-sc0000084-1575043694:691309..691866Clytia hemisphaericaexon
TCONS_00008348-exon-sc0000084-1510915933:693293..693479TCONS_00008348-exon-sc0000084-1510915933:693293..693479Clytia hemisphaericaexon
TCONS_00008348-exon-sc0000084-1510915933:691309..691866TCONS_00008348-exon-sc0000084-1510915933:691309..691866Clytia hemisphaericaexon
TCONS_00008348-exon-sc0000084-1491911889:693293..693479TCONS_00008348-exon-sc0000084-1491911889:693293..693479Clytia hemisphaericaexon
TCONS_00008348-exon-sc0000084-1491911889:691309..691866TCONS_00008348-exon-sc0000084-1491911889:691309..691866Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084supercontigsc0000084:691309..693479 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0860941	0	0	0	0	0	0	0	0	0	0	0	0.0637706	0.213014	0	0.0465395	0	0	0	0.117054	0	0.329507	0.23773	0.242411	0	0	0.126725	0.134352	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008348 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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