TCONS_00008281 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008281
Unique NameTCONS_00008281
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2033

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008281 ID=TCONS_00008281|Name=TCONS_00008281|organism=Clytia hemisphaerica|type=transcript|length=2033bp
CTttcacagaaaaacacacaaCAGGAACAAGATGGCTGCATCAAAACTCA
GTCAACTTTTTAATCGTGGTAAGAAGCAGCCAAAATTAAGAAATCAAAGT
AGTCAAGGGGTTGATTCTTCAGATGATGAAGGTTACCAGGATCCTATCCA
GAATTGTCCTACTGAACCACCAACACGGATTCCCATCCCATCGTATCCTC
CTCCTCGACCAGCTTCACCGAAAAATCCAGTTGCAAACAGAGATGATTAT
GCAGATCCATGGGACAGCAAAGGTTCTCGGACAATGAGTTCAGGAGGAGG
TGGTGCAATACCTCCCCCTAGAAGTATGGATACATATCAAGACCCATTTG
ATTCTCgtaaagaaaatgttaaatctTACGATCCAAGTGGTATGAGTTCT
TCACGCGAAGACTACGCTGACCCCTTTGATACAAAATTCAATAACGAGAA
AACGAAAGCTCAACAGAAGCAAGCACCAACACATTCAGTGCCAGATGAGG
AAGAAGCTGACTACGATGAGCCTTACGAACAAAAACCATCTTTGAATGAC
ACCTATGAAGACCCATGGGATACAAGACGTAGTATAGACTTAACTGAATC
ATTCACAGCCTCAACAAAACCTAAACCTGTGCCACCACCTGCTTCTCAga
atatcaaaataaacaataaaaggGATGATTATAGTGACCCATGGGATAGT
AAATTGTCAGCTAGTTTAACGACAGAAGAATCATATGACGATACTTACTC
AGAGCCATATGATAAAGGTAAAACAACAATTATGGACgagaaaagcaaaa
agaaaccATCAACCAGTACCAAggatgatgatgacgatgatgatgatatt
tatgatatgccttatgaagaaaaagaaatgatCGGCATCGCAAAACCACA
ACAAAATCAAGGGATCCAGAACTTCCGGTCTGCCTCTGTCTCATCAACAA
AACCGGAACCACAGAGAGTGGCACCCAAACCACCACTTCCGTATTCCGGT
ACTGTGACGTCACCCACAGTACCGCCGCCATCCCAGCTGCAACAACCAAC
CACGTCACCACAGCAACCAGCACCTGGTGGTGGTGATTATGATTCCCCTT
GGGAATGGAGGGTTCCAAAGGTTGAACAAGAATTTAAACGTTTTTCAATT
GGTGGTGCTGACAAAAAACCTGCTGCTCCAGTAGCCGCCCCTCGTGGTGG
ACCCGCTGGTAAACGCCCAGGTGCCGCCCCACCACCGCCCATTAACCAAA
ACATCAACCCTGTACCAAAACCACAGCGAACTAATCCACCACCCAAACCA
CCCCAGCCGACTAATATCACCGAGAAAGAATACGAAGTAGACCCGACCAT
ACCACTGGAAAACCAAGGTTGGTTCCATGGGCATATCCGGCGCGGTGAAG
CGGAAAGTTTACTTCACAACCAACCGGACTGTAGCTATTTGATACGGAAC
AGTGAAAGCTCAAAACTCGACTTTTCGCTTTCGTTAAGAAATCGTGGTGC
TCCAATGCATTTGAAGATTTCCAATCGAGATGGCAAGTACATTCTTGGAA
TCAATTCACGACCTTACGACACCATCCCAGAGATGATCCACCATTATGCC
ATGCATATGCTGAATATCAAAGGTGCGGAACATGTCAAACTAAAGTACCC
TGTCTTTCAAGAGAATATGTATTTCACTGTCGAGCCTGGTAGCTGAGCTA
TGACGGTCATGTGACCTGCACTTAACCAATGACTTGAGACTGAATTCTCT
CAATGAATCTGTATATAGTGAAATGAAAATACAGTccaatgatttttaaa
aaagggaaattttaaacattttgcaTAAAATAATCTGTTATGGATTTTAT
GTGGTGAAATCTTgatcaaaaatgaaatattatcNTCTGCCTATTATTAT
Aatatgcttatataagcataaaaaatgcttttcttgctccacattcgtgt
caattcgatgtgaaaaagcttgcaaattaaaattgacgagtaagcaaacg
atatcactcttatttaaaaactaaaCCTTTAAT
Run BLAST on NCBI

transcript from alignment at sc0000084:311015..324513+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008281 ID=TCONS_00008281|Name=TCONS_00008281|organism=Clytia hemisphaerica|type=transcript|length=13499bp|location=Sequence derived from alignment at sc0000084:311015..324513+ (Clytia hemisphaerica)
CTttcacagaaaaacacacaaCAGGAACAAGATGGCTGCATCAAAACTCA
GTCAACTTTTTAATCGTGGTAAGAAGCAGCCAAAATTAAGAAATCAAAGT
AGTCAAGGGGTTGATTCTTCAGATGATGAAGGTTACCAGGATCCTATCCA
GAATTGTCCTACTGAACCACCAACACGGATTCCCATCCCATCGTATCCTC
CTCCTCGACCAGCTTCACCGAAAAATCCAGTTGTAAGTATATATGATTCC
TTCTTGTTGATTCTTCTCTATTTGGAAAGCAAAgcgattcaattaaaaaa
tcaatgatttAAATTTCTTCATgctattttaataaaattgtaGATCTCAG
GTTATTGTAAACCCAAAAACCTGGCAGCTAAAGATTCGTTGTGTCTGCGT
tttatagttgttttggagaactgCTGTGTAGTaatccagacgtccgcgct
cgataggatcgatcatcggaacggctcgatgacggatcgNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcattatcgagc
tagtatttcaatcgagtatattgattcgtcatcgattgttaatcgattcg
tcatcgattgttaatcgattcgtcatcgattgttaattgattcgtcatcg
atcgttaatcgatttgttatcgatcgtaaattgAGTATGAGTAGTTAGTA
Agttagggtcgataagatcgataaaagatcgatgatagatcgataaataa
tcgataactaatcataagctttaaaaaatcttgagtatcgatcctctatc
gatctcctatccggatcgttaaNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNtccgatgatcgatcctatcgagcgcggacgtctgg
agtAATTAGTAGTTACtctcaactgctttaacttggggcGATTAGTCGAA
ACATGTTAATATTGACTGTTGATATATATAACACAAATTAAAGGGATCTT
CGTCATCTCCGTAATCATAATCAACAGATTACAGTAGCggcatttcacaa
aaaaagaccGACTGTCGGCGAAATTCAAGGGCCAAACGGATCatctaaac
aaaaggaacacgagacataaacatcaggctgtttgttttggttaagaTTG
TTCTATAAAATAGCAAAGCAAAATACTGTcgactgctctaacttgggact
atctgacaaaacatgggacggaaattcggccaccatttcatcgAACCTCc
taagtcatttgatttgagttaaggaacagggtattaaaaaatacacaatt
tctctttcgattttacagtaagttgAAAATACAGAcgagatatgcaacag
tcccatgtttcgaccaatcgtcccaagttagagcagttgacggtataaag
ggccattccagaatttgtctgtaacagggggcggacgacacaggatttcc
gagggcaaaagttttcaccaaaattcgaaatttccaaggcgagagaagaa
aatgtatgaaattccaaggcaattgaattaaaaaaggcaaaaaagagtgg
aatttccaatgcattttgtaaaagtacatggatttttatcagaatttccg
accaccactggaaaaaaattatttccgaggctagagaaaattaaaaaatg
cacgtcgtccgaccggggggtaacaaaaattttctggaatggcccaaaag
gaggaaaagaaatatggaaagtaacatttgtcacaaaataaacgtctcaa
aaatcaatatttctggtaaatttcttagcgtcacaGACTCTAACCTCACC
ACCCCTTCGTGTCAATGGGAAGAattgatatgtgagtgacccctaacttt
cactgatagtgcattttcattcaaaatgaccggatgccgattggagaatt
agaaaacgcccgccgcctatagcctggagatccatgctatgatttcttat
tttatatactgatagcaaaatatataacatggtatgggctgacagtttga
atttcccagatcataataacggttgaaaacatatagccaatcaaattttg
ttattcttttactggtcactttcttagagaaagctcAAGTCCCGAAATTT
GGactttattttagtaagtgaggacagcgctaaatttgaatttcccactg
taaattttttgaagcaGAAATCTACCTCACAGCTCATACCCATCCTGTAT
ATATCGTATTATAAAAAGacaggcgctgtggtatagtggtcattgacctt
ggttactgcacaggcgactgaggttcaattcccactcgcagcggtttact
tggcaagtgaatgaaccttcgcccgggtcaacccatgccatgtgagggga
attgggtagtcagtccaaggtgctgacggggcgctcattgaaagcgtcta
tagttgcgaaagcctcaaagcctcctgcaactcaaccaaatagaaaaaaa
aaaggatGGGTCTCCTGTCTAAACCGCCTATCGCCGATgtgattaacaaa
taacaagtgtgtaacttgctgcgcgagtgacgtcaaacgctccatggttt
tgccactaatttagTCTTCTTCCTTCCACAcagtgtgttccactacggat
ttttttcatatttcgatttaaaagcctactcggaaAAATCGTGGATTTTT
TAATACACCGTTCATTACTAactcattaaaattttaaaaataattcttaT
AATTCTTATATTCAATTATATAATAATTCTTTATAATTAATTCTATAATT
CTTATATGCAGTCTAGACTaattaaactcctatatcaggattagaaacta
ggctagtcttaactcttacctcttttatctttgcCTTTTTGcatcaatac
aatgctgacaagttgacataACACATTGACAAATAATCCCTGTGAGAAGT
TTGTATCAAAATcggcaacaaaaacaaaagtggttccttctactgattgc
tttgtGACGCTCCGttgcctttcagtgccttgtcTTGTCTGACGGGCTGC
TAAAAATCTCTCCTTTCATAACAcctcttttatttgtttcaatccgcgAT
CCTAAGGTGAgactaccgtgagatcgggtaacttgcatcagtggagggaa
acttgcatagccatcaaatgcctgaccaatcaaagcagcaaaatttcaaa
acaaatgaactatgcagTTTGCAGTTCTTCTCTATCATTTTAGAATCTCA
TATTTGCCGCATGAGTATTTTTGGCCAACAGAATCGCGAGTAAATAAAAC
AGCTTGCTtggataataaaaaatcatgtgAGATCATAAATTTCGAGATGT
TGGAAATTAGACGTTTCTCGAACGCTGTGGGCGTGTAATCTCAAATCTAA
TAATGATATTTaaacataattatgcatgacttTACTTTTGATTTACAACC
CACAAATTTTGTATATcagctttgttttgatttaactttgaattttaatg
acatttgagggctatgcagaagaacttaaaatattactttaaatattttc
attttgaagaattggtgcaaaaaagtgaaacatggagaagtttcattttt
tattgctttaTAAATTGAAACGGGGGATTTAGAAAAtcttctatgtttag
tttttgcataaacccctgtaactatgggcaagcaccccgttgctaagatg
ttggcttgaaatcgaaaatgaaaccactgaaaacaaaagtgaaatcCGCT
GGCACTCCAAAGGTGTGACTAACTGTATTGAATAATTAAATACTGttgca
aatttctttttaacaataacATTACCTTATTGATATGCCTTTAAACACAG
CTGTTATCTatagacaagataatttatcccaTTTGTACTGGCTGAGGGTA
AGTAATGTATGCTGTTATGTTAAGTTAAGAATCCCCCCCCAAACAAAAAC
CAATTTTTGGCTTTTACGACCTCTTtgaaacaggggggggggtcagggcC
CAGGATACCAAACCAGGGCCCAATAACCTGacttttcaaagtttaaaagt
agtagacaccaccaccccctaaattggtatcaataccaacttaaaaaccc
caattttctaaaaaggggggacccacccccctaaATTAGTATCGATACGA
acatgaaaatcctgattttctgaaaaaggggggacccagccccctaaatt
ggtatcgatacgaaCTTGAAAATCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccccctcattttggtatc
gatatcaacttgactttttgaaatttgggtttggtatctggtgccccccc
ccccccccctgtttgaAAACCATCCAGATCTACAAATCTCAATCCAGAAA
GTCAGAATGCCTTTATAAAGAGGGAAGCAGCTTAAATCTTAAGATTTATG
ATAATTTTGTATTTAATATTTTCTTCTAATCCAGGCAAACAGAGATGATT
ATGCAGATCCATGGGACAGCAAAGGTTCTCGGACAATGAGTTCAGGAGGA
GGTGGTGCAATACCTCCCCCTAGAAGTATGGATACATATCAAGACCCATT
TGATTCTCgtaaagaaaatgttaaatctTACGATCCAAGTGGTATGAGTT
CTTCACGCGAAGACTACGCTGACCCCTTTGATACAAAATTCAATAACGAG
AAAACGAAAGCTCAACAGAAGCAAGCACCAACACATTCAGTGCCAGATGA
GGAAGAAGCTGACTACGATGAGCCTTACGAACAAAAACCATCTTTGAATG
ACACCTATGAAGACCCATGGGATACAAGACGTAGTATAGACTTAACTGAA
TCATTCACAGCCTCAACAAAACCTAAACCTGTGCCACCACCTGCTTCTCA
gaatatcaaaataaacaataaaaggGATGATTATAGTGACCCATGGGATA
GTAAATTGTCAGCTAGTTTAACGACAGAAGAATCATATGACGATACTTAC
TCAGAGCCATATGATAAAGGTAAAACAACAATTATGGACgagaaaagcaa
aaagaaaccATCAACCAGTACCAAggatgatgatgacgatgatgatgata
tttatgatatgccttatgaagaaaaagaaatgatCGGCATCGCAAAACCA
CAACAAAATCAAGGGTAATTTTGAACCTTTATTCTTCTCAGTATAATCTA
CCTTTCTAAGAAGGTGTGTTTAAAGATTTCGAGAGGGAAGTTTTCTAGAA
GGATGATAATCAATAAGTGAGAGGCAGAAACACGTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
gactcctgaaaatgaaaacaagtttttctcattctaacacaacgtaaatt
aagtttcttgaactaaattggcaaaatgtatcaaattcataaaactagtT
CGAATAAACTAGACTAGATAAAAAATTCATTGTATTAGGCATGCCTAGAG
TCTTTGTAACATATACGATGAACGTTATGTACAGAAAAGTTTTATCACGA
Ctaaaaaaagtttcagtttgttcaactctagttttgaatgaattttggtt
gattgaaaggattgagagcagcaaaagttagataaaaatttaatttcaat
tatagaatgaagatgcttttatatggaatcagggtatagtgtaaacgatt
caaataagtttttatacttaattatacaacattttaagtcagataccaat
ttcaaattcagccagattctacaaaaattaaaaaaaggggtacccaccat
ctcattttggtatcgatatcaacttaaagattccctaattttcaaaagaa
gggggacccaccccctcattttggtatcgatatcaacttgactttttgaa
atttgggtttggtatctggtgccttaccccccccccctgtttgaAAACCA
TCCAGATCTACAAATCTCAATCCAGAAAGTCAGAATGCCTTTATAAAGAG
GGAAGCAGCTTAAATCTTAAGATTTATGATAATTTTGTATTTAATATTTT
CTTCTAATCCAGGCAAACAGAGATGATTATGCAGATCCATGGGACAGCAA
AGGTTCTCGGACAATGAGTTCAGGAGGAGGTGGTGCAATACCTCCCCCTA
GAAGTATGGATACATATCAAGACCCATTTGATTCTCgtaaagaaaatgtt
aaatctTACGATCCAAGTGGTATGAGTTCTTCACGCGAAGACTACGCTGA
CCCCTTTGATACAAAATTCAATAACGAGAAAACGAAAGCTCAACAGAAGC
AAGCACCAACACATTCAGTGCCAGATGAGGAAGAAGCTGACTACGATGAG
CCTTACGAACAAAAACCATCTTTGAATGACACCTATGAAGACCCATGGGA
TACAAGACGTAGTATAGACTTAACTGAATCATTCACAGCCTCAACAAAAC
CTAAACCTGTGCCACCACCTGCTTCTCAgaatatcaaaataaacaataaa
aggGATGATTATAGTGACCCATGGGATAGTAAATTGTCAGCTAGTTTAAC
GACAGAAGAATCATATGACGATACTTACTCAGAGCCATATGATAAAGGTA
AAACAACAATTATGGACgagaaaagcaaaaagaaaccATCAACCAGTACC
AAggatgatgatgacgatgatgatgatatttatgatatgccttatgaaga
aaaagaaatgatCGGCATCGCAAAACCACAACAAAATCAAGGGTAATTTT
GAACCTTTATTCTTCTCAGTATAATCTACCTTTCTAAGAAGGTGTGTTTA
AAGATTTCGAGAGGGAAGTTTTCTAGAAGGATGATAATCAATAAGTGAGA
GGCAGAAACACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNccccctcattttggtatcgatatcaacttgact
ttttgaaatttgggtttggtatctggtgcccccccccccccccctgtttg
aAAACCATCCAGATCTACAAATCTCAATCCAGAAAGTCAGAATGCCTTTA
TAAAGAGGGAAGCAGCTTAAATCTTAAGATTTATGATAATTTTGTATTTA
ATATTTTCTTCTAATCCAGGCAAACAGAGATGATTATGCAGATCCATGGG
ACAGCAAAGGTTCTCGGACAATGAGTTCAGGAGGAGGTGGTGCAATACCT
CCCCCTAGAAGTATGGATACATATCAAGACCCATTTGATTCTCgtaaaga
aaatgttaaatctTACGATCCAAGTGGTATGAGTTCTTCACGCGAAGACT
ACGCTGACCCCTTTGATACAAAATTCAATAACGAGAAAACGAAAGCTCAA
CAGAAGCAAGCACCAACACATTCAGTGCCAGATGAGGAAGAAGCTGACTA
CGATGAGCCTTACGAACAAAAACCATCTTTGAATGACACCTATGAAGACC
CATGGGATACAAGACGTAGTATAGACTTAACTGAATCATTCACAGCCTCA
ACAAAACCTAAACCTGTGCCACCACCTGCTTCTCAgaatatcaaaataaa
caataaaaggGATGATTATAGTGACCCATGGGATAGTAAATTATCAGCTA
GTTTAACGACAGAAGAATCATATGACGATACTTACTCTGAACCATATGAT
AAAGGTAAAACAACAATTATGGACgagaaaagcaaaaagaaaccATCAAC
CAGTACAAAggatgatgatgacgatgatgatgatatttatgatatgcctt
atgaagaaaaagaaatgatCGGCATCGCAAAACCACAACAAAATCAAGGG
TAATTTTGAACCTTTATTCTTCTCAGTATAATCTACCTTTCTAAGAAGGT
GTGTTTAAAGATTTCGAGAGGGAAGTTTTCTAGAAGGATGATAATCAATA
AGTGAGAGGCAGAAACACGTTCTGTATAATGTTTGCATGATTGTCTTGTT
CTAACTAAAAAttcgatatatttttcaaaacatatattcagGATCCAGAA
CTTCCGGTCTGCCTCTGTCTCATCAACAAAACCGGAACCACAGAGAGTGG
CACCCAAACCACCACTTCCGTATTCCGGTACTGTGACGTCACCCACAGTA
CCGCCGCCATCCCAGCTGCAACAACCAACCACGTCACCACAGCAACCAGC
ACCTGGTGGTGGTGATTATGATTCCCCTTGGGAATGGAGGGTTCCAAAGG
TAAGCAGAGAGTGGTTTTCTGATTTGTTGATGTGTATTTTCGAAGTGGGA
TTTGAAAGGTTTGCTTTCTTAAGCGTATGTAGAGTTGTAAAGTTAATGTT
TCTGCATTTCaatttttgttggttttttaatttttttgaaatgttattTA
TTAATGAGAAACTGCAATGAATGCatgaatgaattttttatatttttgaa
ggGAAATCCCATAATTTTTGGGGTAAACTTTCAGTGAACTCTTTGCAGTG
TTTTTCTGGAGGAAAATGTTTCTATAATAATACGTTTTTTAACACCCCTG
CAGTAAGTATATTTTTGTATctatgtatttttgaaggaaaattttgttCA
GAAATTGTTAAGAGTCAAACAGTTATAGTAaggatatttttctttattat
tttgatttcaGGTTGAACAAGAATTTAAACGTTTTTCAATTGGTGGTGCT
GACAAAAAACCTGCTGCTCCAGTAGCCGCCCCTCGTGGTGGACCCGCTGG
TAAACGCCCAGGTGCCGCCCCACCACCGCCCATTAACCAAAACATCAACC
CTGTACCAAAACCACAGCGAACTAATCCACCACCCAAACCACCCCAGCCG
ACTAATATCACCGAGAAAGAATACGAAGTAGACCCGACCATACCACTGGA
AAACCAAGGGTAAGTTTCTCACATTTTTAAGACTACACATAACGGTAATA
ATAGCACTTGTTAGACTCTAAGTACATTTTCCCCGAAAATTGCTTATGGA
GTTTGTCTCCTCTTTTAAAGTATTTCAATCAATGTTGCACCTTTATCGTC
TGTAGACACAACATCACCCGGTTAAGTTTTCTAACATAGGTTTTCGTTTA
AATATCAAGCTTTTAAAGGACTCTCCGTCTAGATTGTCCAGAGCTGTTTT
TAAATAATGCAACTTTTTAAAGGAATGTGCTTTTGCCTATAATCCTTCTA
TATGACTCAGCACTTTTCAATGTTTCTCgtgggaaattttattttttaat
atatcaaattttgtttgatttcagtgctaaactttaaataaaaagtgtAA
CTGAATAACACATCCATGCTAAATCTAACTAAAATTTACTTAAAATTAAT
GTTTTAGAAAGTAAGTGTAAAATTCTTTTGGAGGTTAAACTCATTTAAAA
AACGCTTTTAAGACAATCCAATATTCAATATAAGCAATACCCTCTTATCA
CTTCCTAGCCAAGAAATGTTCGACTTTGATTACTTTTATAATTGATAACT
TCCCAGATTCCATGACTTTCATATCAATAACTTTATCATTGCCTTTTAAT
AACTCCGCTGACACTTTCCTTTTGTACCAGCTTAAAAATGTAATAAAGTG
TGGTTTAAACGGCCTTGGGAATAGTTTTCAACAAATCTAAATGAGagctt
atttttcaaagaaagtttTCTTTCGTCCATACCAAAGTAACGATTGGAAA
GCCTGGTATTTAGAGACGGAATTTTGTCTATCAACCTTTCCAGCAAATCT
TTACGAGTGTTTCGTACTTTTAAAATGAACAGGAGCAACTCTGCCTTCGT
CACTTGTTGCCTCTGTGAGACAGCAACCTTTACTGAACTTTTAAAATTCG
ATAGTTTCTGATATTATTAACTTTTCTCTTCTCCAGTTGGTTCCATGGGC
ATATCCGGCGCGGTGAAGCGGAAAGTTTACTTCACAACCAACCGGACTGT
AGCTATTTGATACGGAACAGTGAAAGCTCAAAACTCGACTTTTCGCTTTC
GTTAAGGTATATACATCTTATTAGAATTTCCATCTCCGACAAAAGATCTG
TAGCCTATCCAAAGTACCTAAAGAAATGCAATCTTTCAATTGACCTCAAG
TGGTTATTGCTAAAATGCGCAGTAGAGTTTGTTttactcgaacctctata
agtAGAATGACTCCTTCACccaacaagttttctcgtcccttcagctAACA
ATGCCTTATTAAGCCTACTTTATAACTCAAacttccataactcgaactaa
TTTGTGTTCCCTGTGCTTGTTTGAGTTTTTGAGATTCTACTATACCTACA
AACTTGCTAAAGTTCATTGTGACTTTTAGTGCTTGTGATATATGACTTTC
CAAGATTAAAATTTCAAACGACtgaaaatgcaaaataatttcGATTTCTT
TAAGAAATCGTGGTGCTCCAATGCATTTGAAGATTTCCAATCGAGATGGC
AAGTACATTCTTGGAATCAATTCACGACCTTACGACACCATCCCAGAGAT
GATCCACCATTATGCCATGCATATGCTGAATATCAAAGGTGCGGAACATG
TCAAACTAAAGTACCCTGTCTTTCAAGAGAATATGTATTTCACTGTCGAG
CCTGGTAGCTGAGCTATGACGGTCATGTGACCTGCACTTAACCAATGACT
TGAGACTGAATTCTCTCAATGAATCTGTATATAGTGAAATGAAAATACAG
TccaatgatttttaaaaaagggaaattttaaacattttgcaTAAAATAAT
CTGTTATGGATTTTATGTGGTGAAATCTTgatcaaaaatgaaatattatc
NTCTGCCTATTATTATAatatgcttatataagcataaaaaatgcttttct
tgctccacattcgtgtcaattcgatgtgaaaaagcttgcaaattaaaatt
gacgagtaagcaaacgatatcactcttatttaaaaactaaaCCTTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004652XLOC_004652Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008281-exon-sc0000084-1491911889:311015..311246TCONS_00008281-exon-sc0000084-1491911889:311015..311246Clytia hemisphaericaexon
TCONS_00008281-exon-sc0000084-1510915933:311015..311246TCONS_00008281-exon-sc0000084-1510915933:311015..311246Clytia hemisphaericaexon
TCONS_00008281-exon-sc0000084-1575043694:311015..311246TCONS_00008281-exon-sc0000084-1575043694:311015..311246Clytia hemisphaericaexon
TCONS_00008281-exon-sc0000084-1491911889:317099..317138TCONS_00008281-exon-sc0000084-1491911889:317099..317138Clytia hemisphaericaexon
TCONS_00008281-exon-sc0000084-1510915933:317099..317138TCONS_00008281-exon-sc0000084-1510915933:317099..317138Clytia hemisphaericaexon
TCONS_00008281-exon-sc0000084-1575043694:317099..317138TCONS_00008281-exon-sc0000084-1575043694:317099..317138Clytia hemisphaericaexon
TCONS_00008281-exon-sc0000084-1491911889:318817..319456TCONS_00008281-exon-sc0000084-1491911889:318817..319456Clytia hemisphaericaexon
TCONS_00008281-exon-sc0000084-1510915933:318817..319456TCONS_00008281-exon-sc0000084-1510915933:318817..319456Clytia hemisphaericaexon
TCONS_00008281-exon-sc0000084-1575043694:318817..319456TCONS_00008281-exon-sc0000084-1575043694:318817..319456Clytia hemisphaericaexon
TCONS_00008281-exon-sc0000084-1491911889:321606..321813TCONS_00008281-exon-sc0000084-1491911889:321606..321813Clytia hemisphaericaexon
TCONS_00008281-exon-sc0000084-1510915933:321606..321813TCONS_00008281-exon-sc0000084-1510915933:321606..321813Clytia hemisphaericaexon
TCONS_00008281-exon-sc0000084-1575043694:321606..321813TCONS_00008281-exon-sc0000084-1575043694:321606..321813Clytia hemisphaericaexon
TCONS_00008281-exon-sc0000084-1491911889:322226..322473TCONS_00008281-exon-sc0000084-1491911889:322226..322473Clytia hemisphaericaexon
TCONS_00008281-exon-sc0000084-1510915933:322226..322473TCONS_00008281-exon-sc0000084-1510915933:322226..322473Clytia hemisphaericaexon
TCONS_00008281-exon-sc0000084-1575043694:322226..322473TCONS_00008281-exon-sc0000084-1575043694:322226..322473Clytia hemisphaericaexon
TCONS_00008281-exon-sc0000084-1491911889:323451..323570TCONS_00008281-exon-sc0000084-1491911889:323451..323570Clytia hemisphaericaexon
TCONS_00008281-exon-sc0000084-1510915933:323451..323570TCONS_00008281-exon-sc0000084-1510915933:323451..323570Clytia hemisphaericaexon
TCONS_00008281-exon-sc0000084-1575043694:323451..323570TCONS_00008281-exon-sc0000084-1575043694:323451..323570Clytia hemisphaericaexon
TCONS_00008281-exon-sc0000084-1491911889:323969..324513TCONS_00008281-exon-sc0000084-1491911889:323969..324513Clytia hemisphaericaexon
TCONS_00008281-exon-sc0000084-1510915933:323969..324513TCONS_00008281-exon-sc0000084-1510915933:323969..324513Clytia hemisphaericaexon
TCONS_00008281-exon-sc0000084-1575043694:323969..324513TCONS_00008281-exon-sc0000084-1575043694:323969..324513Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084supercontigsc0000084:311015..324513 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.71928	1.28303	2.08627	2.43067	21.9098	16.3659	19.853	19.2725	15.3041	24.6218	14.7446	10.2212	8.52544	11.0835	2.95944	4.57167	4.03189	3.53967	2.963	2.99033	5.33244	4.77499	2.99721	3.82398	11.6553	10.2814	4.9926	3.67493	3.91	5.62867
Blast
[Close]
BLAST of TCONS_00008281 vs. Swiss-Prot (Human)
Match: SHB (SH2 domain-containing adapter protein B OS=Homo sapiens GN=SHB PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 5.801e-32
Identity = 59/106 (55.66%), Postives = 79/106 (74.53%), Query Frame = 2 
Query: 1337 VDPTIPLENQGWFHGHIRRGEAESLLHNQPDCSYLIRNSESSKLDFSLSLRNRGAPMHLKISNRDGKYILGINSRPYDTIPEMIHHYAMHMLNIKGAEHVKLKYPV 1654
            VDP +PLE Q W+HG I RG+AE+LL    +CSYL+RNS++SK D+SLSLR+    MH+K++    KY+LG NS P+D++PE+IH+Y    L IKGAEH+ L YPV
Sbjct:  399 VDPAVPLEKQIWYHGAISRGDAENLLRLCKECSYLVRNSQTSKHDYSLSLRSNQGFMHMKLAKTKEKYVLGQNSPPFDSVPEVIHYYTTRKLPIKGAEHLSLLYPV 504
The following BLAST results are available for this feature:
BLAST of TCONS_00008281 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SHB5.801e-3255.66SH2 domain-containing adapter protein B OS=Homo sa... [more]
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