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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000821 ID=TCONS_00000821|Name=TCONS_00000821|organism=Clytia hemisphaerica|type=transcript|length=377bp
GAGACCTCTTGCTTTCTATGTTGAAATATGAACCACAACATCGTCCATCA
ATCAACGAAATTGCCAACCACCCTTGGTTTGCATCTCAAGACAAAGAGGT
TAACAAAGAAAGTCAAGAGAACGAAAAACTTCAAATGATTAACAAACTTG
TTGAAAAGCTTGACGGTATAAACgcaaacaaaaaacaacttgaCGAAGCG
TTAGTCCaagccaaaaacaaaaacaagattttgaaaCAGCAACTCGGCAT
TGCTCAAAAGAATCAAATCCTCCAACACAACggaaaatctattttgaaac
CAAACACGGTTCCAATCAACAACAACACAGATGAAAAACTCATGCTGATT
GACAATTTGATCAACAAAATTTACAAC Run BLAST on NCBI protein sequence of TCONS_00000821-protein >TCONS_00000821-protein ID=TCONS_00000821-protein|Name=TCONS_00000821-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
DLLLSMLKYEPQHRPSINEIANHPWFASQDKEVNKESQENEKLQMINKLV
EKLDGINANKKQLDEALVQAKNKNKILKQQLGIAQKNQILQHNGKSILKP
NTVPINNNTDEKLMLIDNLINKIYN Run BLAST on NCBI transcript from alignment at sc0000005:646869..647897- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000821 ID=TCONS_00000821|Name=TCONS_00000821|organism=Clytia hemisphaerica|type=transcript|length=1029bp|location=Sequence derived from alignment at sc0000005:646869..647897- (Clytia hemisphaerica)
GAGACCTCTTGCTTTCTATGTTGAAATATGAACCACAACATCGTCCATCA
ATCAACGAAATTGCCAACCACCCTTGGTTTGCATCTCAAGACAAAGAGGT
TAACAAAGAAAGTCAAGAGAACGAAAAACTTCAAATGATTAACAAACTTG
TTGAAAAGCTTGACGGTATAAACGCAAACAAAAAACAACTTGACGAAGCG
TTAGTCCAAGCCAAAAACAAAAACAAGATTTTGAAACAGCAACTCGGCAT
TGCTCAAAAGGTAAATTCAGAATTTAATTTCATTGAAGCTTAATGTTGCC
CATGGACACTTGTCGTTAAAAAAGATGGGAATATCAATCCCCATCAGTTT
TTTTTTTCCGTTATTTTTACTCACACTGGCTATGATAAAATCCCACCGGG
TGTGTAAGAAAGGGGTGTATTTGGCTTGTGAAAGTTTGCTTAGAAAGTAA
AGTTAAGAGAAGATGAAGCTAAAAAAATAATTGCTGGCTTCCTTAGGCTT
CTGGCTGGATGAATTTAATGATAGAATTTTTTGGGCTTGATTTTAGAATC
AAATCCTCCAACACAACGGAAAATCTATTTTGAAACCAAACACGGTAAGT
AATATTTTCTTCAATAGTTTTATTCAATAACCACTACACAGTCTTCACAG
TAGCATACTTAAGAAAAAATGCCCCTGTCTCGCTATGGACCAGTGATTGC
AATTTTGCAAGTGAAGTTGAAAAGAACGAGGCTAACAAGAATGAAATATC
TCGTTTTTTAATGTTTTTAATGCTTGACATTTTCAATTCGAACGTTTATC
ATCACACATATATCCTAGTTAGAATTCGTTCATGTTTGAATTTTTCAAAT
TTTTGATAAAACATCTAAATCAGGATATACGGCTTTTGTTTTCAATAAAC
CAGATCGCTTAATGACTAGACTTCGTAATGATGGTATATATTTTTATTTA
TTTTCTGTAGGTTCCAATCAACAACAACACAGATGAAAAACTCATGCTGA
TTGACAATTTGATCAACAAAATTTACAAC Coding sequence (CDS) from alignment at sc0000005:646869..647897- >TCONS_00000821 ID=TCONS_00000821|Name=TCONS_00000821|organism=Clytia hemisphaerica|type=CDS|length=1125bp|location=Sequence derived from alignment at sc0000005:646869..647897- (Clytia hemisphaerica)
GTTCCAATCAACAACAACACAGATGAAAAACTCATGCTGATTGACAATTT
GATCAACAAAATTTACAACAATCAAATCCTCCAACACAACGGAAAATCTA
TTTTGAAACCAAACACGGACCTCTTGCTTTCTATGTTGAAATATGAACCA
CAACATCGTCCATCAATCAACGAAATTGCCAACCACCCTTGGTTTGCATC
TCAAGACAAAGAGGTTAACAAAGAAAGTCAAGAGAACGAAAAACTTCAAA
TGATTAACAAACTTGTTGAAAAGCTTGACGGTATAAACGCAAACAAAAAA
CAACTTGACGAAGCGTTAGTCCAAGCCAAAAACAAAAACAAGATTTTGAA
ACAGCAACTCGGCATTGCTCAAAAGGTTCCAATCAACAACAACACAGATG
AAAAACTCATGCTGATTGACAATTTGATCAACAAAATTTACAACAATCAA
ATCCTCCAACACAACGGAAAATCTATTTTGAAACCAAACACGGACCTCTT
GCTTTCTATGTTGAAATATGAACCACAACATCGTCCATCAATCAACGAAA
TTGCCAACCACCCTTGGTTTGCATCTCAAGACAAAGAGGTTAACAAAGAA
AGTCAAGAGAACGAAAAACTTCAAATGATTAACAAACTTGTTGAAAAGCT
TGACGGTATAAACGCAAACAAAAAACAACTTGACGAAGCGTTAGTCCAAG
CCAAAAACAAAAACAAGATTTTGAAACAGCAACTCGGCATTGCTCAAAAG
GTTCCAATCAACAACAACACAGATGAAAAACTCATGCTGATTGACAATTT
GATCAACAAAATTTACAACAATCAAATCCTCCAACACAACGGAAAATCTA
TTTTGAAACCAAACACGGACCTCTTGCTTTCTATGTTGAAATATGAACCA
CAACATCGTCCATCAATCAACGAAATTGCCAACCACCCTTGGTTTGCATC
TCAAGACAAAGAGGTTAACAAAGAAAGTCAAGAGAACGAAAAACTTCAAA
TGATTAACAAACTTGTTGAAAAGCTTGACGGTATAAACGCAAACAAAAAA
CAACTTGACGAAGCGTTAGTCCAAGCCAAAAACAAAAACAAGATTTTGAA
ACAGCAACTCGGCATTGCTCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000821-exon-sc0000005-1575043694:647638..647897 | TCONS_00000821-exon-sc0000005-1575043694:647638..647897 | Clytia hemisphaerica | exon |
| TCONS_00000821-exon-sc0000005-1575043694:647304..647351 | TCONS_00000821-exon-sc0000005-1575043694:647304..647351 | Clytia hemisphaerica | exon |
| TCONS_00000821-exon-sc0000005-1575043694:646869..646937 | TCONS_00000821-exon-sc0000005-1575043694:646869..646937 | Clytia hemisphaerica | exon |
| TCONS_00000821-exon-sc0000005-1510915933:647638..647897 | TCONS_00000821-exon-sc0000005-1510915933:647638..647897 | Clytia hemisphaerica | exon |
| TCONS_00000821-exon-sc0000005-1510915933:647304..647351 | TCONS_00000821-exon-sc0000005-1510915933:647304..647351 | Clytia hemisphaerica | exon |
| TCONS_00000821-exon-sc0000005-1510915933:646869..646937 | TCONS_00000821-exon-sc0000005-1510915933:646869..646937 | Clytia hemisphaerica | exon |
| TCONS_00000821-exon-sc0000005-1491911889:647638..647897 | TCONS_00000821-exon-sc0000005-1491911889:647638..647897 | Clytia hemisphaerica | exon |
| TCONS_00000821-exon-sc0000005-1491911889:647304..647351 | TCONS_00000821-exon-sc0000005-1491911889:647304..647351 | Clytia hemisphaerica | exon |
| TCONS_00000821-exon-sc0000005-1491911889:646869..646937 | TCONS_00000821-exon-sc0000005-1491911889:646869..646937 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:646869..647897 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011009 | Kinase-like_dom |
Blast
The following BLAST results are available for this feature:
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