TCONS_00007967 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007967
Unique NameTCONS_00007967
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length651

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007967 ID=TCONS_00007967|Name=TCONS_00007967|organism=Clytia hemisphaerica|type=transcript|length=651bp
CTCCAACTCTAGTACTCCCCGGTCGTttttaatatgattatttcatctat
gaataatcaaatactttgcgaaattttcgactctcagtcgtcttgttttg
tttacaaaagcaatagaatgtgAGGTCACATCTCCAAACAACTTTCGATT
TTTCACTTGTCTGCAGGATATCGTTGCAGAAAAAAGTAGCTTGAATATAT
CTGGCTCAGCATGACACTGCCTAAAATCTCCTTTTATTCCCGTAGAAAAC
CTATAATATATTTGTCACGGATTGTAAATCTGTGCACCCCTGATAGACTA
TTACAGAAATCTATCCCAAACCACCAAGACCTCAAACAAATGACCCATAA
ACACATGCTGAGTCATTCTTGACCAATCATAACATCTTTTACTCAAGCGT
GTAACCAGGGCCTAAAAATTGTTCAACTGTCTTGGTAATAAAACACATTT
TGGTCCCAttgcattatcagctttttcatGTTTACTTatggcgctagata
ataccgggtgacccaggAAAAAGTGTAAAGGTCTGATGGTTAACTGTGCC
CAAAACAGTCCAAAATAATGTGAATTCTTACTATAATCTTTTTTGATTGT
CAAGAGGAGAggtaaacttaaaatttggcataTAGCTTTTTAAGATTGGT
G
Run BLAST on NCBI

transcript from alignment at sc0000080:247354..248004

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007967 ID=TCONS_00007967|Name=TCONS_00007967|organism=Clytia hemisphaerica|type=transcript|length=651bp|location=Sequence derived from alignment at sc0000080:247354..248004 (Clytia hemisphaerica)
CACCAATCTTAAAAAGCTAtatgccaaattttaagtttaccTCTCCTCTT
GACAATCAAAAAAGATTATAGTAAGAATTCACATTATTTTGGACTGTTTT
GGGCACAGTTAACCATCAGACCTTTACACTTTTTcctgggtcacccggta
ttatctagcgccatAAGTAAACatgaaaaagctgataatgcaaTGGGACC
AAAATGTGTTTTATTACCAAGACAGTTGAACAATTTTTAGGCCCTGGTTA
CACGCTTGAGTAAAAGATGTTATGATTGGTCAAGAATGACTCAGCATGTG
TTTATGGGTCATTTGTTTGAGGTCTTGGTGGTTTGGGATAGATTTCTGTA
ATAGTCTATCAGGGGTGCACAGATTTACAATCCGTGACAAATATATTATA
GGTTTTCTACGGGAATAAAAGGAGATTTTAGGCAGTGTCATGCTGAGCCA
GATATATTCAAGCTACTTTTTTCTGCAACGATATCCTGCAGACAAGTGAA
AAATCGAAAGTTGTTTGGAGATGTGACCTcacattctattgcttttgtaa
acaaaacaagacgactgagagtcgaaaatttcgcaaagtatttgattatt
catagatgaaataatcatattaaaaACGACCGGGGAGTACTAGAGTTGGA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004487XLOC_004487Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007967-exon-sc0000080-1491911889:247354..248004TCONS_00007967-exon-sc0000080-1491911889:247354..248004Clytia hemisphaericaexon
TCONS_00007967-exon-sc0000080-1510915933:247354..248004TCONS_00007967-exon-sc0000080-1510915933:247354..248004Clytia hemisphaericaexon
TCONS_00007967-exon-sc0000080-1575043694:247354..248004TCONS_00007967-exon-sc0000080-1575043694:247354..248004Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:247354..248004 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.240799	0.156545	1.18146	0.622395	0.432975	0	0.41278	0.48305	0.135278	0.335127	0.0813206	0.053457	0.106765	0.776138	0.319045	0.391297	0.0602557	1.48224	1.53585	1.42858	1.55212	1.02205	0.460159	0.334681	0.430892	0.769122	0.110061	0	0.445447	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007967 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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