TCONS_00007891 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007891
Unique NameTCONS_00007891
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2995

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007891 ID=TCONS_00007891|Name=TCONS_00007891|organism=Clytia hemisphaerica|type=transcript|length=2995bp
AAGAGATTAAATCCATGCCATGGATATCATGATTGTCGCACAGAAAGGgg
atttaacatttaacatatATATTTTTATGCTCAATAAGAGTATGTTTCTC
TTGTTTCCCTCAGTTTCATTTTCGAacgcaaaaatatcaaaaagaaaaaa
atcaaaatggcggaaaAAGCGATGATTTATTTTGCTTTTAGTGTTTTGCT
TTCCTTTCCAGCACCAAGCTCCCAGatGGCTAAAAGTCTCTTCATGCCAC
TATCAAGTCTACAAGATTTGGGATTCATTATCAAACCTCACAAAGATAAT
GTCTACAACGACATCCATAAAAGGATGGACATCAATTCGAACTCCAACAT
CGAAGTACCAATCGAGATAGCCAAACAGTTGGGACTTCTAAAACCTCCTG
GAGCAGGAGGATGCCCACCGTGTCCCAATCCTCCTTGTACTGGAGGTCCT
GCAGGATGTGATGTCAAAGCTAAGTCCATCTCAGAAGTGCAGATCAATGG
TAAAGGTGATTACAGTGCACCAGTGGGGCCAGTTTTCAGTGTTGGTGATG
CTCCACCTCCGGGTATTGTGCATCCAGAATTGTTAACACTGAATTTGAAA
GGTAAAGATGGACGCATTGGAAAACCAGGACCCAAGGGACCACCAGGAGA
TGCTGGCCCACCAGGCTCACAAGGTCCAATGGGTCCCAAAGGAGAACAAG
GTGATGAATGTATTGCATCCAAGATGCCAAAAGATAAACAATGTTCACCA
GACATCGTGAGCAACCTTCGTGCAAGATTGGAGAAAGTGGAGAAATGTGC
AACCaATACAACCTTGTTAGCAGCCATAACATTGAACGTATTGAGTACAC
TTGCAAATCAAAGACACGAAAAACCTAAGTCCATTCTCGTCAAACAAAAA
CGCCCTCCACCTCCACCACCGCCCGCTGCACCAGCCCCTCCTCCGCCTCC
TGCTCAACCTGCCGCTCCACCAGCACCCGCTAGTCCACCTTCACCTCCAT
CGCCACCCTCGGGACAGCCAGCACCTGCTGCACCACCTTGTCCTGCAGGA
CCAGGGAAATGTGACGGAAACCAAGGCAATGCCAATGTCCAATCAGATGT
CAAGATCGACCTGACAGGAGGCGCTGACAAACAACAACCAGCTTGTAAAC
GATCTGGCACGTGCGCAACCGATCCGTCTAAAACAGCCAATGCATTGCAA
ACACTACAACAGCTTCTAAACCAAGCTAAagcacaacaacaacaaaatcc
tGTGGCCAAAGATTCTGCAACTGTCTTGGTGAATGGTGTACCGGTTAAAA
TACCGCTCGGGAAATAAATTGAAAGCAATGCAACTGTCATTCATTGGGCA
TCTTTCATTTGTGCTATCTGTCTATCTAAGTAGTAAATACATTACAATAA
ATTTGTTAAATAAAAATAGCGTCTAATCgatataaaatttttattataat
tttgatatttctcaaTTCTTAtgaataatcagatggtttgagatgttttt
gtttgttgaaCCTTTCTGTGAGCCCTGAGTAAAACCAAGAAATGCAAGTA
GCAAGAATTCCAGTGTAAAAAGCGTGTAAGTACCCAACTTAAAAAATTGT
GATTGAAAAAAGTGAGGTAAATTGTTTTCGGATGTTTTGCTCAGCGTCAT
GAAAGGATTCTGCAGAAGAAAAAANACTGCTGCACCACCTTGTCCTGCAG
GACCAGGGAAATGTGACGGAAATCAAGGCAATGCCAATGTCCAATCAGAT
GTCAAGATCGACCTGACAGGAGGCGCTGACAAACAACAACCAGCTTGTAA
ACGATCTGGCACATGCGCAACCGATCCGTCTAAAACAGCCAATGCATTGC
AAACACTACAACAGCTTCTAAACCAAGCTAAagcacaacaacaacaaaat
cctGTGGCCAAAGATTCTGCAACTGTCTTGGTGAATGGTGTACCGGTTAA
AATACCGCTCGGGAAATAAATTGAAAGCAATGCAACTGTCATTCATTGGG
CATCTTTCATTTGTGCTGTCTGTCTATCTAAGTAGTAAATACATTACAAT
AAATTTGTTAAATAAAAATAGCGTCTAATCgatataaaatttttattata
attttgatatttctcaaTTCTTATGactaatcagatggtttgagatgttt
ttgtttgttgaaCCTTTCTGTGAGCCCTGAGTAAAACCAAGAAATGCAAG
TAGCAAGAATTCCAGTGTAAAAAGCGTGTAAGTACCCAACTTAAAAAATT
GTGATTGAAAAAAGTGAGGTAAATTGTTTTCGGATGTTTTGCTCAGCGTC
ATGAAAGGATTCtgcagaagaaaaaaatctcaaacaatCTTTTTTATGAG
TTATTTGACCTATACACATCACATGTAcataaatttcattttatttaaaa
atactaaatagaaaatagaaaataatgatttaaaaaatgcaaatcaaaaa
agttttcgtAGCTTCGTTTATGTCCAAAAAGTAAACCAATGTGGTAAAAC
ATACAGCGGATACCTACCCTGTCCCAACAATATTTCAGCAGCTCAATTGT
TCGTTTGTCCGTTCAACAAGCAAGGAGCTGTCATAATTCATAATAACACC
TTACTCTTTTGTCATGTAATCACAAAAATGAAGCAAGAAAGCAAACAACA
ACATACAGGTATGCCTGATAGTCCATACTTGAAACAGCTATCTAAGTGAG
ATACATTCTTCATTCCTCAtctttttcatgctctttctcACAATGTTCCT
TAGATGAGATGAAGGCTAAAGGCGCCATACCAATGATACAACCTATCACG
ATGCCAATCGCACGACCCTGAGTTGTGAAAAAATCCAACAAacaattaaa
ggttttatttttacataagtgttcccgtttcatatcaggcacatatttta
tatcaggacagtgtgttgccattgttatattatgctgatataagcaaaaa
atgttgttttttcctctttctgatcaatcttgctccacatccgtg
Run BLAST on NCBI

transcript from alignment at sc0000080:239496..244685-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007891 ID=TCONS_00007891|Name=TCONS_00007891|organism=Clytia hemisphaerica|type=transcript|length=5190bp|location=Sequence derived from alignment at sc0000080:239496..244685- (Clytia hemisphaerica)
AAGAGATTAAATCCATGCCATGGATATCATGATTGTCGCACAGAAAGGGG
ATTTAACATTTAACATATATATTTTTATGCTCAATAAGAGTATGTTTCTC
TTGTTTCCCTCAGTTTCATTTTCGAACGCAAAAATATCAAAAAGAAAAAA
ATCAAAATGGCGGAAAAAGCGATGATTTATTTTGCTTTTAGTGTTTTGCT
TTCCTTTCCAGCACCAAGCTCCCAGGTAAATATATTAATCAAATTAGTTA
GAACCTCTAGAGTGTGTACCACGTCTTTAGACTTTTGTCCATAGCTCATT
GTTATAGATGGCACAACACATTATCAATTGAAAACCTTTTGAAACAAACC
ACACAAGCCCAAACCAACTAATCTTCCAAAACCATCCCATCAAATCAACT
TTTTGATTTTTCAGATGGCTAAAAGTCTCTTCATGCCACTATCAAGTCTA
CAAGATTTGGGATTCATTATCAAACCTCACAAAGATAATGTCTACAACGA
CATCCATAAAAGGATGGTAAGTTATTTATCCACAACTCCTTGGTAATCAT
AGATTGAACTTTTATCGATGTCATGCTAGGATCTCCTTATCTAGAATGTA
AAGATCTGAGATCAAACTGGCATAAAACAAGCTAATATAAATAACACTGT
TATTTTGGCATCGGATAGTGCAGACACACTGTATATATTGTGAATGTTAA
TATACTGTAATCTCCACCAAATCTAGACTTAGCTAGAGACATATCATACG
AGCTGTATTCCTTATTGAAATTACAGGACATCAATTCGAACTCCAACATC
GAAGTACCAATCGAGATAGCCAAACAGTTGGGACTTCTAAAACCTCCTGG
AGCAGGAGGATGCCCACCGTGTCCCAATCCTCCTTGTACTGGAGGTCCTG
CAGGATGTGATGTCAAAGCTAAGTCCATCTCAGAAGTGCAGATCAATGGT
AAAGGTGATTACAGTGCACCAGTGGGGCCAGTTTTCAGTGTTGGTGATGC
TCCACCTCCGGGTATTGTGCATCCAGTAAGTTCTTTTGTTCTTAATCATC
GTGAAAAAGTTAAAAAGCCATACAATGTTGGAAAATAATATCCGAGGAAA
TTAATCTACTCAGATCTTTGAAATGAAGAAAATCAAGATGTAAAATGAAA
AAAAAAATAAGAATAGGGTCAATATACTTTTTTTCATACTACACTTTAGG
AATTGTTAACACTGAATTTGAAAGGTAAAGATGGACGCATTGGAAAACCA
GGACCCAAGGGACCACCAGGAGATGCTGGNCAAGTCTACAAGATTTGGGA
TTCATTATCAAACCTCACAAAGATAATGTCTACAACGACATCCATAAAAG
GATGGTAAGTTATTTATCCACAACTCCTTGGTAATCATAGATTGAACTTT
TATCGATGTCATGCTAGGATCTCCTTATCTAGAATGTAAAGATCTGAGAT
CAAACTGGCATAAAACAAGCTAATATAAATAACACTGTTATTTTGGCATC
GGATAGTGCAGACACACTGTATATATTGTGAATGTTAATATACTGTAATC
TCCACCAAATCTAGACTTAGCTAGAGACATATCATACGAGCTGTATTCCT
TATTGAAATTACAGGACATCAATTCGAACTCCAACATCGAAGTACCAATC
GAGATAGCCAAACAGTTGGGACTTCTAAAACCTCCTGGAGCAGGAGGATG
CCCACCGTGTCCCAATCCTCCTTGTACTGGAGGTCCTGCAGGATGTGATG
TCAAAGCTAAGTCCATCTCAGAAGTGCAGATCAATGGTAAAGGTGATTAC
AGTGCACCAGTGGGGCCAGTTTTCAGTGTTGGTGATGCTCCACCTCCGGG
TATTGTGCATCCAGTAAGTTCTTTTGTTCTTAATCATCGTGAAAAAGTTA
AAAAGCCATACAATGTTGGAAAATAATATCCGAGGAAATTAATCTACTCA
GATCTTTGAAATGAAGAAAATCAAGATGTAAAATGAAAAAAAAAATAAGA
ATAGGGTCAATATACTTTTTTTCATACTACACTTTAGGAATTGTTAACAC
TGAATTTGAAAGGTAAAGATGGACGCATTGGAAAACCAGGACCCAAGGGA
CCACCAGGAGATGCTGGCCCACCAGGCTCACAAGGTCCAATGGGTCCCAA
AGGAGAACAAGGTGATGAATGTATTGCATCCAAGATGCCAAAAGATGTGA
GTTATATTTAGTGCATTCAATAAATTCCAATATTAAATTAGGCTTGCAAT
TAAGGCGATGCTATTCTGTAATGAATGTCATACTTGACATTGAAATCAAT
AAGAAGCTCAAAGGAAAGCACTGATATATACTAAAACATTTCCTTGCAGA
AACAATGTTCACCAGACATCGTGAGCAACCTTCGTGCAAGATTGGAGAAA
GTGGAGAAATGTGCAACCGTAAGTATTCATCAAGATATGTCTTCTCCTCA
AATATGGTCAGTCAAGAACCTTTTATAAAATATCCCCATTTAATCATCAA
AATTCATTGAATTAAATATAACTTTACTGCAATCGACAAGTATTTTAACT
CATACCCATATGTAATAATCACGACATTGAAGACATCATATAAAATTCAA
TTTAATCATTTTTAGAATACAACCTTGTTAGCAGCCATAACATTGAACGT
ATTGAGTACACTTGCAAATCAAAGACACGAAAAACCTAAGTCCATTCTCG
TCAAACAAAAACGCCCTCCACCTCCACCACCGCCCGCTGCACCAGCCCCT
CCTCCGCCTCCTGCTCAACCTGCCGCTCCACCAGCACCCGCTAGTCCACC
TTCACCTCCATCGCCACCCTCGGGACAGCCAGCACCTGCTGCACCACCTT
GTCCTGCAGGACCAGGGAAATGTGACGGAAACCAAGGCAGTAAGTATTAA
ATCAAGAAATATTTGTAGAAATCAAAACATAAAATTATTTCACTGTGAGT
CAAAAGGTAACCTTGTCTCCATAAAGTCTAGTCTTAAATAATAAAGCTGT
TGAAATGAATGAAGGAATAAATCCTACTACGAACCTCAGTTATATCAACT
CTCTTGAAAATGTATATCATATATTCTTTAGATGCCAATGTCCAATCAGA
TGTCAAGATCGACCTGACAGGAGGCGCTGACAAACAACAACCAGCTTGTA
AACGATCTGGCACGTGCGCAACCGATCCGTCTAAAACAGCCAATGCATTG
CAAACACTACAACAGCTTCTAAACCAAGCTAAAGCACAACAACAACAAAA
TCCTGTGGCCAAAGATTCTGCAACTGTCTTGGTGAATGGTGTACCGGTTA
AAATACCGCTCGGGAAATAAATTGAAAGCAATGCAACTGTCATTCATTGG
GCATCTTTCATTTGTGCTATCTGTCTATCTAAGTAGTAAATACATTACAA
TAAATTTGTTAAATAAAAATAGCGTCTAATCGATATAAAATTTTTATTAT
AATTTTGATATTTCTCAATTCTTATGAATAATCAGATGGTTTGAGATGTT
TTTGTTTGTTGAACCTTTCTGTGAGCCCTGAGTAAAACCAAGAAATGCAA
GTAGCAAGAATTCCAGTGTAAAAAGCGTGTAAGTACCCAACTTAAAAAAT
TGTGATTGAAAAAAGTGAGGTAAATTGTTTTCGGATGTTTTGCTCAGCGT
CATGAAAGGATTCTGCAGAAGAAAAAANACTGCTGCACCACCTTGTCCTG
CAGGACCAGGGAAATGTGACGGAAATCAAGGCAGTAAGTATTAAATCAGG
AAATATTTGTAGAAATCAAAACATAAAATTATTTCACTGTGAGTCAAAAG
GTAACCTTTTCTCCATAAAGTCTAGTCTTAAATAAGAAAGCTATTGAAAT
GAATGAAGGAATAAATCCTACTACGGACCTCAGTTATATCAACTCTCTTG
AAAATGTATATCATATATTCTTTAGATGCCAATGTCCAATCAGATGTCAA
GATCGACCTGACAGGAGGCGCTGACAAACAACAACCAGCTTGTAAACGAT
CTGGCACATGCGCAACCGATCCGTCTAAAACAGCCAATGCATTGCAAACA
CTACAACAGCTTCTAAACCAAGCTAAAGCACAACAACAACAAAATCCTGT
GGCCAAAGATTCTGCAACTGTCTTGGTGAATGGTGTACCGGTTAAAATAC
CGCTCGGGAAATAAATTGAAAGCAATGCAACTGTCATTCATTGGGCATCT
TTCATTTGTGCTGTCTGTCTATCTAAGTAGTAAATACATTACAATAAATT
TGTTAAATAAAAATAGCGTCTAATCGATATAAAATTTTTATTATAATTTT
GATATTTCTCAATTCTTATGACTAATCAGATGGTTTGAGATGTTTTTGTT
TGTTGAACCTTTCTGTGAGCCCTGAGTAAAACCAAGAAATGCAAGTAGCA
AGAATTCCAGTGTAAAAAGCGTGTAAGTACCCAACTTAAAAAATTGTGAT
TGAAAAAAGTGAGGTAAATTGTTTTCGGATGTTTTGCTCAGCGTCATGAA
AGGATTCTGCAGAAGAAAAAAATCTCAAACAATCTTTTTTATGAGTTATT
TGACCTATACACATCACATGTACATAAATTTCATTTTATTTAAAAATACT
AAATAGAAAATAGAAAATAATGATTTAAAAAATGCAAATCAAAAAAGTTT
TCGTAGCTTCGTTTATGTCCAAAAAGTAAACCAATGTGGTAAAACATACA
GCGGATACCTACCCTGTCCCAACAATATTTCAGCAGCTCAATTGTTCGTT
TGTCCGTTCAACAAGCAAGGAGCTGTCATAATTCATAATAACACCTTACT
CTTTTGTCATGTAATCACAAAAATGAAGCAAGAAAGCAAACAACAACATA
CAGGTATGCCTGATAGTCCATACTTGAAACAGCTATCTAAGTGAGATACA
TTCTTCATTCCTCATCTTTTTCATGCTCTTTCTCACAATGTTCCTTAGAT
GAGATGAAGGCTAAAGGCGCCATACCAATGATACAACCTATCACGATGCC
AATCGCACGACCCTGAGTTGTGAAAAAATCCAACAAACAATTAAAGGTTT
TATTTTTACATAAGTGTTCCCGTTTCATATCAGGCACATATTTTATATCA
GGACAGTGTGTTGCCATTGTTATATTATGCTGATATAAGCAAAAAATGTT
GTTTTTTCCTCTTTCTGATCAATCTTGCTCCACATCCGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004463XLOC_004463Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007891-exon-sc0000080-1575043694:244461..244685TCONS_00007891-exon-sc0000080-1575043694:244461..244685Clytia hemisphaericaexon
TCONS_00007891-exon-sc0000080-1575043694:244170..244271TCONS_00007891-exon-sc0000080-1575043694:244170..244271Clytia hemisphaericaexon
TCONS_00007891-exon-sc0000080-1575043694:242823..243071TCONS_00007891-exon-sc0000080-1575043694:242823..243071Clytia hemisphaericaexon
TCONS_00007891-exon-sc0000080-1575043694:242490..242648TCONS_00007891-exon-sc0000080-1575043694:242490..242648Clytia hemisphaericaexon
TCONS_00007891-exon-sc0000080-1575043694:242268..242336TCONS_00007891-exon-sc0000080-1575043694:242268..242336Clytia hemisphaericaexon
TCONS_00007891-exon-sc0000080-1575043694:241797..242070TCONS_00007891-exon-sc0000080-1575043694:241797..242070Clytia hemisphaericaexon
TCONS_00007891-exon-sc0000080-1575043694:240953..241604TCONS_00007891-exon-sc0000080-1575043694:240953..241604Clytia hemisphaericaexon
TCONS_00007891-exon-sc0000080-1575043694:239496..240760TCONS_00007891-exon-sc0000080-1575043694:239496..240760Clytia hemisphaericaexon
TCONS_00007891-exon-sc0000080-1510915933:244461..244685TCONS_00007891-exon-sc0000080-1510915933:244461..244685Clytia hemisphaericaexon
TCONS_00007891-exon-sc0000080-1510915933:244170..244271TCONS_00007891-exon-sc0000080-1510915933:244170..244271Clytia hemisphaericaexon
TCONS_00007891-exon-sc0000080-1510915933:242823..243071TCONS_00007891-exon-sc0000080-1510915933:242823..243071Clytia hemisphaericaexon
TCONS_00007891-exon-sc0000080-1510915933:242490..242648TCONS_00007891-exon-sc0000080-1510915933:242490..242648Clytia hemisphaericaexon
TCONS_00007891-exon-sc0000080-1510915933:242268..242336TCONS_00007891-exon-sc0000080-1510915933:242268..242336Clytia hemisphaericaexon
TCONS_00007891-exon-sc0000080-1510915933:241797..242070TCONS_00007891-exon-sc0000080-1510915933:241797..242070Clytia hemisphaericaexon
TCONS_00007891-exon-sc0000080-1510915933:240953..241604TCONS_00007891-exon-sc0000080-1510915933:240953..241604Clytia hemisphaericaexon
TCONS_00007891-exon-sc0000080-1510915933:239496..240760TCONS_00007891-exon-sc0000080-1510915933:239496..240760Clytia hemisphaericaexon
TCONS_00007891-exon-sc0000080-1491911889:244461..244685TCONS_00007891-exon-sc0000080-1491911889:244461..244685Clytia hemisphaericaexon
TCONS_00007891-exon-sc0000080-1491911889:244170..244271TCONS_00007891-exon-sc0000080-1491911889:244170..244271Clytia hemisphaericaexon
TCONS_00007891-exon-sc0000080-1491911889:242823..243071TCONS_00007891-exon-sc0000080-1491911889:242823..243071Clytia hemisphaericaexon
TCONS_00007891-exon-sc0000080-1491911889:242490..242648TCONS_00007891-exon-sc0000080-1491911889:242490..242648Clytia hemisphaericaexon
TCONS_00007891-exon-sc0000080-1491911889:242268..242336TCONS_00007891-exon-sc0000080-1491911889:242268..242336Clytia hemisphaericaexon
TCONS_00007891-exon-sc0000080-1491911889:241797..242070TCONS_00007891-exon-sc0000080-1491911889:241797..242070Clytia hemisphaericaexon
TCONS_00007891-exon-sc0000080-1491911889:240953..241604TCONS_00007891-exon-sc0000080-1491911889:240953..241604Clytia hemisphaericaexon
TCONS_00007891-exon-sc0000080-1491911889:239496..240760TCONS_00007891-exon-sc0000080-1491911889:239496..240760Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:239496..244685 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.18478	0	0	0.409373	1.24414	1.28284	3.20085	3.28505	0	1.17275e-07	4.70766e-07	0.288584	0.000636828	0	0	0	0	0	0	0	0	0	0	0	1.59879	1.69551	0.0732039	0	0.205091	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007891 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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