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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007813 ID=TCONS_00007813|Name=TCONS_00007813|organism=Clytia hemisphaerica|type=transcript|length=6380bpRun BLAST on NCBI protein sequence of TCONS_00007813-protein >TCONS_00007813-protein ID=TCONS_00007813-protein|Name=TCONS_00007813-protein|organism=Clytia hemisphaerica|type=polypeptide|length=427bp MGPWALFGSVRRLGRRTFNFRSISLCVNSNQKMAASETPENIVEFAEAYTRun BLAST on NCBI transcript from alignment at sc0000080:218756..237095+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007813 ID=TCONS_00007813|Name=TCONS_00007813|organism=Clytia hemisphaerica|type=transcript|length=18340bp|location=Sequence derived from alignment at sc0000080:218756..237095+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000080:218756..237095+ >TCONS_00007813 ID=TCONS_00007813|Name=TCONS_00007813|organism=Clytia hemisphaerica|type=CDS|length=6420bp|location=Sequence derived from alignment at sc0000080:218756..237095+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007813 vs. Swiss-Prot (Human)
Match: ALG3 (Dol-P-Man:::Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase OS=Homo sapiens GN=ALG3 PE=1 SV=1) HSP 1 Score: 230.335 bits (586), Expect = 1.499e-64 Identity = 122/235 (51.91%), Postives = 158/235 (67.23%), Query Frame = 3
Query: 900 KRNRSA--------LKTWLDPVAIFNFLQDLIFQYKNFWVVALSLLLAEIVVNVAVIWKIPYTEIDWKAYMDEVEGFLNGTLDYTKLEGGTGPLVYPAGFVYIFSGLYYLTDHGENIKLGQYFFCGLYLVFISVIFYIHYKSQRVPPYAMFFLCCASYRIHSIFVLRLFNDPVAMLLFYIALTYFINQKWTTGCILFSLAVSVKMNVLLFAPGLAVLMLYQLGMAKMLANIIICG 1580
KR RS K WL + + L+ + + +VA L LAE+ + VI ++ YTEIDWKAYM EVEG +NGT DYT+L+G TGPLVYPAGFVYIF GLYY T G +I++ Q F LYL + ++F I++++ +VPP+ FF+CCASYR+HSIFVLRLFNDPVAM+L ++++ + Q+W GC FSLAVSVKMNVLLFAPGL L+L Q G L + IC
Sbjct: 7 KRGRSGSAAQAEGLCKQWLQ--RAWQERRLLLREPRYTLLVAACLCLAEVGITFWVIHRVAYTEIDWKAYMAEVEGVINGTYDYTQLQGDTGPLVYPAGFVYIFMGLYYATSRGTDIRMAQNIFAVLYLATLLLVFLIYHQTCKVPPFVFFFMCCASYRVHSIFVLRLFNDPVAMVLLFLSINLLLAQRWGWGCCFFSLAVSVKMNVLLFAPGLLFLLLTQFGFRGALPKLGICA 239 HSP 2 Score: 160.614 bits (405), Expect = 4.773e-41 Identity = 103/193 (53.37%), Postives = 128/193 (66.32%), Query Frame = 3
Query: 1887 LMLYQLGMAKMLANIIICGLIQLALGLPFLLNNAVGYMARSFNLGRQFFYKWTVNWRLIPEWLFLSRWFHXXXXXXXXXXXFYFMFKRWPQPGNGWINKVLQIFQ--SDNKAAESKLSTNDIIYVLFTSNFIGMMCSRSLHYQFYVWYFHTLPFILWSIRMPSA-----LRLLILGVIEMCWNTYPSTVISSS 2444
L+L Q G L + IC +Q+ LGLPFLL N GY++RSF+LGRQF + WTVNWR +PE LFL R FHL LL HL+LL F RW + G +L + + S K L+ N I+ LFTSNFIG+ SRSLHYQFYVWYFHTLP++LW+ MP+ LRLL+LG+IE+ WNTYPST SS+
Sbjct: 221 LLLTQFGFRGALPKLGICAGLQVVLGLPFLLENPSGYLSRSFDLGRQFLFHWTVNWRFLPEALFLHRAFHLALLTAHLTLLLLFALCRWHRTG----ESILSLLRDPSKRKVPPQPLTPNQIVSTLFTSNFIGICFSRSLHYQFYVWYFHTLPYLLWA--MPARWLTHLLRLLVLGLIELSWNTYPSTSCSSA 407 The following BLAST results are available for this feature:
BLAST of TCONS_00007813 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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