TCONS_00007876 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007876
Unique NameTCONS_00007876
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1031

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007876 ID=TCONS_00007876|Name=TCONS_00007876|organism=Clytia hemisphaerica|type=transcript|length=1031bp
ggaGGAGAGAATAATGATTGCAAGCAGGCTGTTTTTGTGTTGTTGATGAT
GATGGAATGATAAACCGGTTTGTGTGTGTATACACAGAGAAAGAAATATG
GCTGATGTCTTCTTACTTAGGAAATAAATAATTCCCTAGCCTTTTTTGTT
GTTCTCTTGTTTTATATATGGAAAATTTTTACTTGCTTTGATTATTTTGC
TGGGATTCTATTATTTATCAATGGTTTTTACATGTACATAAAATTCACCT
ACTACAACTACcaaaaaaaatgttacaaaatagATATAGACGACGCTATA
GGGACGAAGATAACCAAGAAACAGAGACACAGCCTTCGACGAGGCGAACG
ACACGAACTTACGATACTGGGGGTAGCACCACTGATACAACCTCCACACG
AAGAACCAATCGTACATCCACTGATGACGATTCAAGCTCTCGCATGAGTA
TCGCCGAAAGGCTACATAAAAAGAATCAAGAACTGCTTGCAACAACTTCA
GATAATAACAATTCATCGGGCAGATCATGGCAACGCTCTTCAAACCCTTC
GACGACCTCTTCAACTTCATCTTCGGACACGGGGGATACAAAAGATCTAC
AACGAAAACTCGACCAAGCTGTCAAAGAAGTAGAAGAATACAAATCCAag
tatgaaaaaatgaaaaaggaaaaagaagaattagAAAAACAACTTAGTCA
ATATAAAGAAGATATCGATaaAGTGCAAGATCTAAAGAGCGACAATATAC
GTCTGAAAGATGAGAATGGGGCGCTTATCAGAGTTATTAGTAAATTATCA
CGTACCCCTGCTTCATCTTCTTCGTGAGTCGTGGATCGTCCGCTGCTTCC
TTGtgaattattatattattattattgctGAGGTGCTGCTGGTGCTACCG
AGGAGAGATGAGCCGctgattaaatttttttaaataagaaagaGAGAACT
TTTTATACTACCTTTCATAGAACAGTTGTTTtaataaatgaagaagaaga
aggatataaacaacaaaatacaaCGTCCCAN
Run BLAST on NCBI

transcript from alignment at sc0000080:172808..175521-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007876 ID=TCONS_00007876|Name=TCONS_00007876|organism=Clytia hemisphaerica|type=transcript|length=2714bp|location=Sequence derived from alignment at sc0000080:172808..175521- (Clytia hemisphaerica)
GGAGGAGAGAATAATGATTGCAAGCAGGCTGTTTTTGTGTTGTTGATGAT
GATGGAATGATAAACCGGTTTGTGTGTGTATACACAGAGAAAGAAATATG
GCTGATGTCTTCTTACTTAGGAAATAAATAATTCCCTAGCCTTTTTTGTT
GTTCTCTTGTTTTATATATGGAAAATTTTTACTTGCTTTGATTATTTTGC
TGGGATTCTATTATTTATCAATGGTTTTTACATGTACATAAAATTCACCT
ACTACAACTACCAAAAAAAATGTTACAAAATAGATATAGACGACGCTATA
GGGTATGTTGTTGATCTTTACAGGGGTTGGTTGGTAATTGAGCTTTATTA
TTTTCTTGTGGTTGCAATCGTAGTGTCTTTTATTATCAAGGCTGGATGAT
TGAAAATCTCTTTAGTTTGTTTTAATACTTTGATGTAGAGTTTCGAACAT
TAAGTTTGTAAGCTGAATGTTAAAATTGTTCGAATTTTACCTTATAATCA
ATTTTGGTTTTAGCTTCGAGAAAGTTTTCATAACTAGTAAAGTTTCAAGG
ATCTTTGGTTGTGCAGTATGGAATGCAATGGATTGATTTTAGTCACAAAT
TGTTTAATATTACATCGTTTTTCATGATTTTTTGTTTGTTTCCTCAGGAC
GAAGATAACCAAGAAACAGAGACACAGCCTTCGACGAGGCGAACGACACG
AACTTACGATACTGGGGGTAGCACCACTGATACAACCTCCACACGAAGAA
CCAATCGTACATCCACTGATGACGATTCAAGCTCTCGCATGGTAAGCAGT
AACGTTTTTGTTGGGAAGATAATTGAGAGAAAGTAAAGTTAAGCTATTTT
TTCAGGTTCCTCGTTTTATTGAGTTCGAGTCTTTGAACAATCTTTTAGAG
AGAGATGAAATAATTTTCATGAAAGTGTTCAACGAAAGCATGCACTTGAT
CAAACCATTTCTCTTCCTCACGTTTAAAAGCAGGGAGTATCTCTTTCTCC
CTTTTCTTCAAAGGAATGTCAGGGATAAAGTTTCTGTTTTATTTGCTTTG
ACGTTTGTTGAAAATATCTCAAATTTCTTGCTGCCATTTTGATTCCTGTT
GTTTCTTCAACCGACTGTTTTCTCCTTGCTTCTTTACAGAGTATCGCCGA
AAGGCTACATAAAAAGAATCAAGAACTGCTTGCAACAACTTCAGATAATA
ACAATTCATCGGGCAGATCATGGCAACGCTCTTCAAACCCTTCGACGACC
TCTTCAACTGTAAGCATTTCCTAAATTCTTTTAGTACCAAAGGGAATGTA
GTTGTTATTTCTTAGCAATAACTTTTTTCACAAATGATCCCCCTTTCTCT
TTGATAAGAGGCAAACCTATTTTCTCTCTGATTATTAAAAGGAGGACATA
CAGAGCGCAAGCATCATACAATATTATCATTATTCAGTAATCCCTGCTGT
GCAGTGGCAAAACTAATAGCTCCAGTTCAATTCCATAGGAGACTGAAGCT
TTTACAATGTATGAGGTTTTTCAGATAGGATGATTGTGTCTTGTTTTATA
CTTTCCAAATCTTTGGTCTAGTAGGAGTTTGAAACTTAATATTTCTTAAT
TATCACTGATGATAGGCCTGACGGACATAATGACCAGTTCTTCTCTTCAC
TTTCAGTCATCTTCGGACACGGGGGATACAAAAGATCTACAACGAAAACT
CGACCAAGCTGTCAAAGAAGTAGAAGAATACAAATCCAAGTATGAAAAAA
TGAAAAAGGTAAGCATATTTTCTTTCATGTGAAATTCCATTACACCATGT
TTTTTTTAAATCAATCATTGATCAGTACATGTTTCTTTTTACAAGAACAT
CCAAAATTTTTGAAGCCTTCGGATGTTCTTATTCTCACCATTTGTGCTAC
AATTTCCTAAGAAATGGGGTGTTTTAGAGCCCACTAAGCCATCGAAGCCT
TATGATCTTATATTATTTGTTCTTATAAAAACGTGTGGTTTGGCTATTTC
ATTGGCACTTCAATTTCTCATGAGTCAATTTTTTTGGACTTTTAAATTAT
TTGTTTTTATTTGTTTTCAGGAAAAAGAAGAATTAGAAAAACAACTTAGT
CAATATAAAGAAGATATCGATGTAAGTATTGATTGATTGATTGATTGATT
GATTGATTGATTGATTGATTGATTGATTGATCATTGATTGATCATTGATT
GATTGATTGATTTTGTAAGTTTTTGAGCAATCCAGAAATGTATGGGCCTA
GAGTATTAGGGTTTACACTTGCCTTTTTTTCAAACGTTATCTTGATGATT
GCCTTCCCGAATCAATATAATTGGCAGCAACACTGCAATATGCAATATTT
CTTAACATGCATTGCTCTGTCTAAATCAATTTTTTGTTTTTATATTTTGT
AGAAAGTGCAAGATCTAAAGAGCGACAATATACGTCTGAAAGATGAGAAT
GGGGCGCTTATCAGAGTTATTAGTAAATTATCACGTACCCCTGCTTCATC
TTCTTCGTGAGTCGTGGATCGTCCGCTGCTTCCTTGTGAATTATTATATT
ATTATTATTGCTGAGGTGCTGCTGGTGCTACCGAGGAGAGATGAGCCGCT
GATTAAATTTTTTTAAATAAGAAAGAGAGAACTTTTTATACTACCTTTCA
TAGAACAGTTGTTTTAATAAATGAAGAAGAAGAAGGATATAAACAACAAA
ATACAACGTCCCAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004461XLOC_004461Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007876-exon-sc0000080-1575043694:175220..175521TCONS_00007876-exon-sc0000080-1575043694:175220..175521Clytia hemisphaericaexon
TCONS_00007876-exon-sc0000080-1575043694:174731..174874TCONS_00007876-exon-sc0000080-1575043694:174731..174874Clytia hemisphaericaexon
TCONS_00007876-exon-sc0000080-1575043694:174263..174382TCONS_00007876-exon-sc0000080-1575043694:174263..174382Clytia hemisphaericaexon
TCONS_00007876-exon-sc0000080-1575043694:173764..173865TCONS_00007876-exon-sc0000080-1575043694:173764..173865Clytia hemisphaericaexon
TCONS_00007876-exon-sc0000080-1575043694:173401..173451TCONS_00007876-exon-sc0000080-1575043694:173401..173451Clytia hemisphaericaexon
TCONS_00007876-exon-sc0000080-1575043694:172808..173119TCONS_00007876-exon-sc0000080-1575043694:172808..173119Clytia hemisphaericaexon
TCONS_00007876-exon-sc0000080-1510915933:175220..175521TCONS_00007876-exon-sc0000080-1510915933:175220..175521Clytia hemisphaericaexon
TCONS_00007876-exon-sc0000080-1510915933:174731..174874TCONS_00007876-exon-sc0000080-1510915933:174731..174874Clytia hemisphaericaexon
TCONS_00007876-exon-sc0000080-1510915933:174263..174382TCONS_00007876-exon-sc0000080-1510915933:174263..174382Clytia hemisphaericaexon
TCONS_00007876-exon-sc0000080-1510915933:173764..173865TCONS_00007876-exon-sc0000080-1510915933:173764..173865Clytia hemisphaericaexon
TCONS_00007876-exon-sc0000080-1510915933:173401..173451TCONS_00007876-exon-sc0000080-1510915933:173401..173451Clytia hemisphaericaexon
TCONS_00007876-exon-sc0000080-1510915933:172808..173119TCONS_00007876-exon-sc0000080-1510915933:172808..173119Clytia hemisphaericaexon
TCONS_00007876-exon-sc0000080-1491911889:175220..175521TCONS_00007876-exon-sc0000080-1491911889:175220..175521Clytia hemisphaericaexon
TCONS_00007876-exon-sc0000080-1491911889:174731..174874TCONS_00007876-exon-sc0000080-1491911889:174731..174874Clytia hemisphaericaexon
TCONS_00007876-exon-sc0000080-1491911889:174263..174382TCONS_00007876-exon-sc0000080-1491911889:174263..174382Clytia hemisphaericaexon
TCONS_00007876-exon-sc0000080-1491911889:173764..173865TCONS_00007876-exon-sc0000080-1491911889:173764..173865Clytia hemisphaericaexon
TCONS_00007876-exon-sc0000080-1491911889:173401..173451TCONS_00007876-exon-sc0000080-1491911889:173401..173451Clytia hemisphaericaexon
TCONS_00007876-exon-sc0000080-1491911889:172808..173119TCONS_00007876-exon-sc0000080-1491911889:172808..173119Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:172808..175521 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.28382e-06	0	1.95474	2.17583	188.517	159.356	185.35	185.587	104.658	109.069	62.9202	81.0282	123.108	109.019	82.0152	77.0091	79.6621	83.9409	137.367	136.342	85.2866	83.0711	40.4071	49.1897	41.3344	50.2008	99.0203	92.7093	72.2422	67.2905
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007876 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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