TCONS_00007520 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007520
Unique NameTCONS_00007520
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1544

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007520 ID=TCONS_00007520|Name=TCONS_00007520|organism=Clytia hemisphaerica|type=transcript|length=1544bp
GCCTTATCTTCCAACTCTATATTATAGGATGCGATAAAATTTTTCCAGTT
TGTCATCACATGTcgtgttttggaaaaagttttgcATATCGAAATAGGGA
GTTTTATCCAAGATACTATAATTGAGTACGTATGACCTTATCATATAATA
ATATTGTGTAGAATAAATTAAATTACGATATATTAAATACATTATataca
atttaaaataattacCAAAAATAacatacacatttttataagaacaaatc
atataagaacattaggcttcgatggctaaaatattaaaaacaagttaaga
acatttttaggcttaaaacagaaaaagttaagtctcagaaattttgaatg
ttcttttaAACGTGTAGTGTTGTTTGTATCTAAAATTTAGGTGTGAACGG
TGGAGTGAGTGGTTTGTACGGATGATGTCTGTATTCTGTGCTATGTGATC
TTTTGTTCGTGCGAAGATAGACTTCTGAACCGTAATCGAGTTCCGTATCA
ACGCGACTACTTGTGTGAGGTGGCGAATGTCTATGCGGAAATGCTGGGAC
TGGATAAGGTGTTCGAGTATTGCACGGACTACACGTGCACTGATGGCGAG
GAGGAGAAGTCTGTGCAATGTTAGACAGCCATACGAAATCGAATCGCTTT
TTCATACACGCGCGTCTTTTACGATATTCTCCCTTCATAAAACTGTTCAA
ATAGTTCGGGTGTATTGTCCAATCATTGCCCCGCCCATTTTCTGAACGCC
CCAACTTAATAAAACATTCATTTAAACTGAGATTGTGTCGCACACAATTT
CGCCAACCTTTTACACGTTTCTCGAGTCCTTTATAATTCATTTCAATGAA
ATCGTAAATTCCACCCAAAGTAATTTTATGTTGTGGAGTTGAGAGTACAG
CTTGAGCGATCATCGCCGTGTAAGAAGGGAACTGTCCGCTTTCCTctaaa
tcaaaagattttttcgcaCCAGGAGAATTAGTAGTTTCGTTGTCCGAATT
CGATTCGTCGTCTGATAGGCGACGTCTTTGTTGTTCAAGCAACGGCATGT
TTTTGTTATGTTGGTCGTAAATATTTGACGGTACTTCATTATATTTTCGT
TCTGGCGTGCTGATTCGATTGTTGTTGTTATCGCGTAAGAAGTCggttgt
gttttgtttttgaccaCATTTTGCTCGATGTCCTTCCCGTTCtgtgattg
aaaatttgtctCGAATGTTCAGCTTTATTTGCTCTTTGAATTTGCGTTTA
TGATTGATTAAAGGGTATCTTGATAGGAAGTCAGAATCATCCACATTTGA
GCTTGGTGACGTCATCTTGGCTGCAATTTTGTTTCTTCAAGTTTAATTGA
TCATTAAAACTATTATGGTCTTCTGCTTAGCAACACAGCCCGTCCTTTGC
CTAGCAACAGAAACACAGTCCGTCCCTAGTCGATACTGTCTTGTTTGAAA
CTGTTTCAAATACTTTTTGCTCTCTCTCCATTTATAACTTTTATCTGGTC
TGCATAATTAACCTCCTACTGAGAGATCGCAGTGTGGTGTATTG
Run BLAST on NCBI

protein sequence of TCONS_00007520-protein

>TCONS_00007520-protein ID=TCONS_00007520-protein|Name=TCONS_00007520-protein|organism=Clytia hemisphaerica|type=polypeptide|length=311bp
MTSPSSNVDDSDFLSRYPLINHKRKFKEQIKLNIRDKFSITEREGHRAKC
GQKQNTTDFLRDNNNNRISTPERKYNEVPSNIYDQHNKNMPLLEQQRRRL
SDDESNSDNETTNSPGAKKSFDLEESGQFPSYTAMIAQAVLSTPQHKITL
GGIYDFIEMNYKGLEKRVKGWRNCVRHNLSLNECFIKLGRSENGRGNDWT
IHPNYLNSFMKGEYRKRRACMKKRFDFVWLSNIAQTSPPRHQCTCSPCNT
RTPYPVPAFPHRHSPPHTSSRVDTELDYGSEVYLRTNKRSHSTEYRHHPY
KPLTPPFTPKF
Run BLAST on NCBI

transcript from alignment at sc0000077:443602..445145

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007520 ID=TCONS_00007520|Name=TCONS_00007520|organism=Clytia hemisphaerica|type=transcript|length=1544bp|location=Sequence derived from alignment at sc0000077:443602..445145 (Clytia hemisphaerica)
CAATACACCACACTGCGATCTCTCAGTAGGAGGTTAATTATGCAGACCAG
ATAAAAGTTATAAATGGAGAGAGAGCAAAAAGTATTTGAAACAGTTTCAA
ACAAGACAGTATCGACTAGGGACGGACTGTGTTTCTGTTGCTAGGCAAAG
GACGGGCTGTGTTGCTAAGCAGAAGACCATAATAGTTTTAATGATCAATT
AAACTTGAAGAAACAAAATTGCAGCCAAGATGACGTCACCAAGCTCAAAT
GTGGATGATTCTGACTTCCTATCAAGATACCCTTTAATCAATCATAAACG
CAAATTCAAAGAGCAAATAAAGCTGAACATTCGagacaaattttcaatca
caGAACGGGAAGGACATCGAGCAAAATGtggtcaaaaacaaaacacaacc
GACTTCTTACGCGATAACAACAACAATCGAATCAGCACGCCAGAACGAAA
ATATAATGAAGTACCGTCAAATATTTACGACCAACATAACAAAAACATGC
CGTTGCTTGAACAACAAAGACGTCGCCTATCAGACGACGAATCGAATTCG
GACAACGAAACTACTAATTCTCCTGGtgcgaaaaaatcttttgatttagA
GGAAAGCGGACAGTTCCCTTCTTACACGGCGATGATCGCTCAAGCTGTAC
TCTCAACTCCACAACATAAAATTACTTTGGGTGGAATTTACGATTTCATT
GAAATGAATTATAAAGGACTCGAGAAACGTGTAAAAGGTTGGCGAAATTG
TGTGCGACACAATCTCAGTTTAAATGAATGTTTTATTAAGTTGGGGCGTT
CAGAAAATGGGCGGGGCAATGATTGGACAATACACCCGAACTATTTGAAC
AGTTTTATGAAGGGAGAATATCGTAAAAGACGCGCGTGTATGAAAAAGCG
ATTCGATTTCGTATGGCTGTCTAACATTGCACAGACTTCTCCTCCTCGCC
ATCAGTGCACGTGTAGTCCGTGCAATACTCGAACACCTTATCCAGTCCCA
GCATTTCCGCATAGACATTCGCCACCTCACACAAGTAGTCGCGTTGATAC
GGAACTCGATTACGGTTCAGAAGTCTATCTTCGCACGAACAAAAGATCAC
ATAGCACAGAATACAGACATCATCCGTACAAACCACTCACTCCACCGTTC
ACACCTAAATTTTAGATACAAACAACACTACACGTTtaaaagaacattca
aaatttctgagacttaactttttctgttttaagcctaaaaatgttcttaa
cttgtttttaatattttagccatcgaagcctaatgttcttatatgatttg
ttcttataaaaatgtgtatgtTATTTTTGgtaattattttaaattgtatA
TAATGTATTTAATATATCGTAATTTAATTTATTCTACACAATATTATTAT
ATGATAAGGTCATACGTACTCAATTATAGTATCTTGGATAAAACTCCCTA
TTTCGATATgcaaaactttttccaaaacacgACATGTGATGACAAACTGG
AAAAATTTTATCGCATCCTATAATATAGAGTTGGAAGATAAGGC

Coding sequence (CDS) from alignment at sc0000077:443602..445145

>TCONS_00007520 ID=TCONS_00007520|Name=TCONS_00007520|organism=Clytia hemisphaerica|type=CDS|length=936bp|location=Sequence derived from alignment at sc0000077:443602..445145 (Clytia hemisphaerica)
ATGACGTCACCAAGCTCAAATGTGGATGATTCTGACTTCCTATCAAGATA
CCCTTTAATCAATCATAAACGCAAATTCAAAGAGCAAATAAAGCTGAACA
TTCGagacaaattttcaatcacaGAACGGGAAGGACATCGAGCAAAATGt
ggtcaaaaacaaaacacaaccGACTTCTTACGCGATAACAACAACAATCG
AATCAGCACGCCAGAACGAAAATATAATGAAGTACCGTCAAATATTTACG
ACCAACATAACAAAAACATGCCGTTGCTTGAACAACAAAGACGTCGCCTA
TCAGACGACGAATCGAATTCGGACAACGAAACTACTAATTCTCCTGGtgc
gaaaaaatcttttgatttagAGGAAAGCGGACAGTTCCCTTCTTACACGG
CGATGATCGCTCAAGCTGTACTCTCAACTCCACAACATAAAATTACTTTG
GGTGGAATTTACGATTTCATTGAAATGAATTATAAAGGACTCGAGAAACG
TGTAAAAGGTTGGCGAAATTGTGTGCGACACAATCTCAGTTTAAATGAAT
GTTTTATTAAGTTGGGGCGTTCAGAAAATGGGCGGGGCAATGATTGGACA
ATACACCCGAACTATTTGAACAGTTTTATGAAGGGAGAATATCGTAAAAG
ACGCGCGTGTATGAAAAAGCGATTCGATTTCGTATGGCTGTCTAACATTG
CACAGACTTCTCCTCCTCGCCATCAGTGCACGTGTAGTCCGTGCAATACT
CGAACACCTTATCCAGTCCCAGCATTTCCGCATAGACATTCGCCACCTCA
CACAAGTAGTCGCGTTGATACGGAACTCGATTACGGTTCAGAAGTCTATC
TTCGCACGAACAAAAGATCACATAGCACAGAATACAGACATCATCCGTAC
AAACCACTCACTCCACCGTTCACACCTAAATTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004250XLOC_004250Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007520-proteinTCONS_00007520-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007520-exon-sc0000077-1491911889:443602..445145TCONS_00007520-exon-sc0000077-1491911889:443602..445145Clytia hemisphaericaexon
TCONS_00007520-exon-sc0000077-1510915933:443602..445145TCONS_00007520-exon-sc0000077-1510915933:443602..445145Clytia hemisphaericaexon
TCONS_00007520-exon-sc0000077-1575043694:443602..445145TCONS_00007520-exon-sc0000077-1575043694:443602..445145Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000077supercontigsc0000077:443602..445145 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0265751	0	0.0601794	0.0294381	0.035838	0.084959	0.0341665	0.0319862	0.0447886	0.027739	0	0.106193	0.070697	0	0.0150902	0.0647764	3.41142	3.90555	0.0564998	0.0886845	4.39373	3.49665	1.06647	2.27157	3.16711	8.07227	0.0728794	0.272226	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001766Fork_head_dom
IPR011991WHTH_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
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BLAST of TCONS_00007520 vs. Swiss-Prot (Human)
Match: FOXL1 (Forkhead box protein L1 OS=Homo sapiens GN=FOXL1 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.699e-19
Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = -2 
Query:  662 SYTAMIAQAVLSTPQHKITLGGIYDFIEMNYKGLEKRVKGWRNCVRHNLSLNECFIKLGRSEN--GRGNDWTIHPNYLNSFMKGEYRKRR 925
            SY A+IA A+   P+ ++TL GIY FI   +       +GW+N +RHNLSLN+CF+K+ R +   G+G+ WT+ P  L+ F  G YR+R+
Sbjct:   53 SYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDNRQGWQNSIRHNLSLNDCFVKVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRK 142
The following BLAST results are available for this feature:
BLAST of TCONS_00007520 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FOXL14.699e-1943.33Forkhead box protein L1 OS=Homo sapiens GN=FOXL1 P... [more]
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