TCONS_00007487 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007487
Unique NameTCONS_00007487
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2236

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007487 ID=TCONS_00007487|Name=TCONS_00007487|organism=Clytia hemisphaerica|type=transcript|length=2236bp
ttaaGATCCAAATGATCTGTCATCTCAAACTACACTTGTGCCAGAGTTAG
TTCTACAAGAACTCGTAAAGCTCGGTCACTATACACCATCGTCTCAAAAC
AATTCATGTTTCATACGAAAACCCAAACAAGAAAGACTTCTCACTCCTGA
AATGAGACGAGAATTTTGGCGTAAGAATCCACATCGTGATGGAATCATCA
ACTCTGGTCGTGTTCTCGGTCAATCACAGAATAAACCAGAAATCTGGCAA
ACTGTTGGTTGCATGTGGGACAAACTTCAAGATAGAAAACCAATTGCTCC
GAGCATGCGAGCAGTGCAACAGGACACACAAAGATTATTAAGTCGTCCTC
GTGTCGGCGAAGAAAATAAGAATTTCAACACTTTTGGTTACACCAATATG
CTCTCTTCTAACATTCCTGGGTACAGTGGTTGCCGACCTCAATTATTACC
GAATCGTACAAAAGCACAAACGTGTGGCTTTCAATCCATCTCCAGACTCA
CCTACAGGGAGCATCCAAAAGTGACGTATCGACTACCTTCGTACGGCCAC
CGAGCGCCAATGTCAAGAACTGTCACACTGACTGAACCTTACAATCCGTT
CAATAAAGTTGAACCAGAACTTCTCGTCATTTAAAACAATCTAAAATCTT
ATGTTTATACTCGATAAAATATTTTccgaaatttaaaattcaatgtttaa
aattacactccaaaaccatccccacttgAACCTTGGAACAagggaatttc
tatccccatcgggattttcaataggaattttatCCCAAGGGAGGGGGCAC
TTAGGCAGAATTAGGTACGGGAACGTGCTGCTGATCAGGGTCTCTTTTAG
ACTCTagagatatctgacagggtcccaaatttaataattttcaagatgtg
gaTCCATCAATCTGACAAGGtcgatttttggtcattttggacaattttca
gggttaaaataggaaattttttgttctaaagggtcccaaatttaccaaaa
gaaagtcagtgcccccccccggttTTATCCGAAccaaggaaaaaagttcc
accggtgcgtaaaaatggaaaattagAGATAACGAAGATAAACAAAAATG
TGAAAGTGCAGTGTAATGGAgtgaataaaaaagtttgaaaatacaAACGT
GCTCTAAAATACTAATTTTGAACAAATTCAATTCTAAATGTGGCATACTC
AGCTAAAGAAAGGTCCTAAATACCCTGTCTATTCTatttgtgaattaaag
tgggcataAAGTTGGCAGTCTAATGCATTGCTCTCTATTGACATCAATGC
AAGGCcatctttcaatctttttcaagcaaagattttaactgtcCACTcaa
acaattagaatagacagggcaAAAAGTCGGCCGactaaactagagctaaa
ttTCTTCACTCCTACATATCATTTTAGCTGAGAACAGGGATATGAACTTA
TTTAGGGGCTCGACAAGGGGGACGACAGGCAAGAATAACacaataattaa
aattttatctgACTATTATATGTTATATTAATAAcgattattttttttac
ttctcgtaAATTCAATATATACATATATGCAAACTAATAGTGATTGCCGG
ctattaaaaatgaagaaaaaataacgATATTCTCACAAAGTACacatctt
tttataagaacatccaaattttttgaagctttcggatgttcttaactttt
tgagttttaagcctaaaaatgttcttattttcactattttgtgagtattt
ttgtccattttcctaagaaattgggtgttttagagtccgcgaagcaTTAA
AATGTACttcttgttcttaatattttttatatcgaagcctcatgttctta
taaaaaaaacgtgtacgccATTTCTTGAGAAAGCTTAAAACAACGACCAC
TTCATATAAAAAAAGGCCGAGAGAATTGAGCTCGGGTACCTGCTAGATGT
ATTGATGACGTTCCTGGAAAGTTCCGATTATTTTCTTAACTATTGTGATT
ACATTTAGAACAATCTGCATCTTTGACTATTTCAAAAGCGAATTTCGAAT
CGTATATCAAATAACAAAGCATATAATATTTTAATAATCTTTTCAAATCC
TTGTATTCTTCTCTTGCAGAGCCCCCTCCCAGCGGTTTACGTGATGGAAT
GATCGAGTTGATGGCTTGATGCCATGATTTATGATTTCAAAAAGCCTAAT
GCGTGATGGACAGTAATAAGACTTTTTTAAATCCGC
Run BLAST on NCBI

transcript from alignment at sc0000077:326158..330359-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007487 ID=TCONS_00007487|Name=TCONS_00007487|organism=Clytia hemisphaerica|type=transcript|length=4202bp|location=Sequence derived from alignment at sc0000077:326158..330359- (Clytia hemisphaerica)
TTAAGATCCAAATGATCTGTCATCTCAAGTAAGTTTAGCTCCGAGTAAAA
ATCCATTGAGAACTTAGCTTATTTCCTTGTTTTTCGAAATTTGGAGTTCG
GGCGAGAAAGTAGATTTTGAGCCATCTCTTAAATTTAATTGGATATTTCA
ATTTGGCACGGGTTTATAGACTTCCAGGCTATATTATGAGCTTTACAGTA
TTGGACTGTTTTTGAACTTTTGGATGCTCAGATCCTAAGTGTTAAATCTA
GCGCTAAAACTCAGAGTTAAAACTTTACCATTCCAACCTAACTTAGAGCA
CTTACAAATCGTTTGTGGTTTTGAAAATTCGTGGGAATTTCCCTTTTTTC
TAAAATATTACGACCATAACTGTAGTTTTAATGAATGAAATCTGGAACAG
TTAGAGAAATCTTCTTTCTGTTAATAACTATCCCTCAAAGTTACGACCAT
AACTGTAGTTTTAATGAATGAAATCTGGAACAGTTAGAGAAATCTTCTTT
CTGTTAATAACTATCCCTCAAAGTTAATACATCTTTATTTTTTCAAATAA
TATTTAGACTACACTTGTGCCAGAGTTAGTTCTACAAGAACTCGTAAAGC
TCGGTCACTATACACCATCGTCTCAAAACAATTCATGTTTCATACGAAAA
CCCAAACAAGAAAGACTTCTCACTCCTGAAATGAGACGAGAATTTTGGCG
TAAGAATCCACATCGTGATGGAATCATCAACTCTGGTCGTGTTCTCGGTC
AATCACAGAATAAACCAGAAATCTGGCAAACTGTTGGTTGCATGTGGGAC
AAACTTCAAGATAGAAAACCAATTGCTCCGAGGTGAATTTTCTTTATTTT
CTACAAATCCATTTTTAAACTGATGTTGTTTTAATGTTATAAGGATAAAT
TTAGATTCAGATCTGCTTTGGTCATATAGCAGAGAAACTTAAAAAAAAAC
TTTTAAAATAAAGCTCTTTCTGAAATCTCTTGACCATAAAAAAGACTTGT
AAACTACCACTCGAGGCTCACACAACAACAACAAAATGCCAACAAAATCT
TCATTCCTTTTAAAGAATCTTTTCAAGGAATTCTCATCAACCATCAAGGA
ATTTTTCTCGTTTCAGCATGCGAGCAGTGCAACAGGACACACAAAGATTA
TTAAGTCGTCCTCGTGTCGGCGAAGAAAATAAGAATTTCAACACTTTTGG
TTACACCAATATGCTGTAAGTTTTTGTGTCCAAAATCGTTCCCAGTCCTT
ATTAGCAACTTTCACAAAAGGCGCATTGTATCTAGTCTGAATTGGGACAA
TACTCAATTAGGCTATCCCCTGAATCGCAGACCTCTACAAAACTGCAGGA
AGAATAAGGAGCACGAATCCGTCATTGGATGCCAACAATTATACCGATGT
ATGTCCATCAGTAAAATTGTAAAATTGAAAAGTGAGATGAGAGAGTCTCA
CTTCACTGTACAGCATCCTATCTAAACACCCCTGTTGCGATCGTAATCAT
ATCTCCGTACCCCCTGTCTCACCCTCTACATCGCTAGACTTACATTCCTA
TTTCATGCTTCTTTTTCACACCCCTGTTTCAAAACTTTGTCACATAACCT
ATTCCAAAGCTTCATTCATCTTATGCCACAAACACGTTGGAAAAATAAGG
GCAAAATAATGAAATCATTGAAATATGAAATATGTTGTTTTCCCTACTAC
TAAAAAGCAAGAGTTTGACATTTTCATGTATATTCATTCCAAATCCTTTT
TCCAGCTCTTCTAACATTCCTGGGTACAGTGGTTGCCGACCTCAATTATT
ACCGAATCGTACAAAAGCACAAACGTGTGGCTTTCAATCCATCTCCAGAC
TCACCTACAGGTAAGGATGATCAAACTCGAACCCAGTCCTTAGTTCGCTT
TTTTATGATTTGTGATAGCGCTCACGATACGAAAAGGTGTATTGTATCAC
GTTCGTCAGTAAAATCAAATTTGATGTAAAGTTGGTATGGACGCGAGATT
GACCTAAGTGTAATTTTAACTAGATTGCCTTTGCCGATCGGTGTGGATGT
GTCGCTTTAGCGGCATCTTATCACCATTGGAACTACAAACTCGATCCCAG
TCCAGTTCGCTTTTTCATGATTTCTAATAGCGCTCACGATTATCACGCTC
ATCAGCAAAATAAAATTAAGAAAGTGTCAAGTAGCTCTGTAAATAGACGA
TGATTGGTTTTCGTAACCTTTCTAGACAAAAAAATTCACAGCGCTCCAAA
ATTCAATTTCTGACTTCTGAGAACGAGTTTTTAAATATCGTTGGGAAGGG
TATTAGTTAAAATTTTGTTTTGCGCACGTGTGAATTGTGAAGCACCGATG
TTAGTTGCTCAAAAAACGAACCATTTTACCCATTATCCAATTTCACTTTT
AAAGCCAAACACTTTAAATTTTATTTAGGACAATAAAATTTCCCTTCTAA
CTATTTTTATTTTCTTCTTATAGGGAGCATCCAAAAGTGACGTATCGACT
ACCTTCGTACGGCCACCGAGCGCCAATGTCAAGAACTGTCACACTGACTG
AACCTTACAATCCGTTCAATAAAGTTGAACCAGAACTTCTCGTCATTTAA
AACAATCTAAAATCTTATGTTTATACTCGATAAAATATTTTCCGAAATTT
AAAATTCAATGTTTAAAATTACACTCCAAAACCATCCCCACTTGAACCTT
GGAACAAGGGAATTTCTATCCCCATCGGGATTTTCAATAGGAATTTTATC
CCAAGGGAGGGGGCACTTAGGCAGAATTAGGTACGGGAACGTGCTGCTGA
TCAGGGTCTCTTTTAGACTCTAGAGATATCTGACAGGGTCCCAAATTTAA
TAATTTTCAAGATGTGGATCCATCAATCTGACAAGGTCGATTTTTGGTCA
TTTTGGACAATTTTCAGGGTTAAAATAGGAAATTTTTTGTTCTAAAGGGT
CCCAAATTTACCAAAAGAAAGTCAGTGCCCCCCCCCGGTTTTATCCGAAC
CAAGGAAAAAAGTTCCACCGGTGCGTAAAAATGGAAAATTAGAGATAACG
AAGATAAACAAAAATGTGAAAGTGCAGTGTAATGGAGTGAATAAAAAAGT
TTGAAAATACAAACGTGCTCTAAAATACTAATTTTGAACAAATTCAATTC
TAAATGTGGCATACTCAGCTAAAGAAAGGTCCTAAATACCCTGTCTATTC
TATTTGTGAATTAAAGTGGGCATAAAGTTGGCAGTCTAATGCATTGCTCT
CTATTGACATCAATGCAAGGCCATCTTTCAATCTTTTTCAAGCAAAGATT
TTAACTGTCCACTCAAACAATTAGAATAGACAGGGCAAAAAGTCGGCCGA
CTAAACTAGAGCTAAATTTCTTCACTCCTACATATCATTTTAGCTGAGAA
CAGGGATATGAACTTATTTAGGGGCTCGACAAGGGGGACGACAGGCAAGA
ATAACACAATAATTAAAATTTTATCTGACTATTATATGTTATATTAATAA
CGATTATTTTTTTTACTTCTCGTAAATTCAATATATACATATATGCAAAC
TAATAGTGATTGCCGGCTATTAAAAATGAAGAAAAAATAACGATATTCTC
ACAAAGTACACATCTTTTTATAAGAACATCCAAATTTTTTGAAGCTTTCG
GATGTTCTTAACTTTTTGAGTTTTAAGCCTAAAAATGTTCTTATTTTCAC
TATTTTGTGAGTATTTTTGTCCATTTTCCTAAGAAATTGGGTGTTTTAGA
GTCCGCGAAGCATTAAAATGTACTTCTTGTTCTTAATATTTTTTATATCG
AAGCCTCATGTTCTTATAAAAAAAACGTGTACGCCATTTCTTGAGAAAGC
TTAAAACAACGACCACTTCATATAAAAAAAGGCCGAGAGAATTGAGCTCG
GGTACCTGCTAGATGTATTGATGACGTTCCTGGAAAGTTCCGATTATTTT
CTTAACTATTGTGATTACATTTAGAACAATCTGCATCTTTGACTATTTCA
AAAGCGAATTTCGAATCGTATATCAAATAACAAAGCATATAATATTTTAA
TAATCTTTTCAAATCCTTGTATTCTTCTCTTGCAGAGCCCCCTCCCAGCG
GTTTACGTGATGGAATGATCGAGTTGATGGCTTGATGCCATGATTTATGA
TTTCAAAAAGCCTAATGCGTGATGGACAGTAATAAGACTTTTTTAAATCC
GC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004222XLOC_004222Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007487-exon-sc0000077-1575043694:330332..330359TCONS_00007487-exon-sc0000077-1575043694:330332..330359Clytia hemisphaericaexon
TCONS_00007487-exon-sc0000077-1575043694:329528..329802TCONS_00007487-exon-sc0000077-1575043694:329528..329802Clytia hemisphaericaexon
TCONS_00007487-exon-sc0000077-1575043694:329145..329243TCONS_00007487-exon-sc0000077-1575043694:329145..329243Clytia hemisphaericaexon
TCONS_00007487-exon-sc0000077-1575043694:328500..328604TCONS_00007487-exon-sc0000077-1575043694:328500..328604Clytia hemisphaericaexon
TCONS_00007487-exon-sc0000077-1575043694:326158..327886TCONS_00007487-exon-sc0000077-1575043694:326158..327886Clytia hemisphaericaexon
TCONS_00007487-exon-sc0000077-1510915933:330332..330359TCONS_00007487-exon-sc0000077-1510915933:330332..330359Clytia hemisphaericaexon
TCONS_00007487-exon-sc0000077-1510915933:329528..329802TCONS_00007487-exon-sc0000077-1510915933:329528..329802Clytia hemisphaericaexon
TCONS_00007487-exon-sc0000077-1510915933:329145..329243TCONS_00007487-exon-sc0000077-1510915933:329145..329243Clytia hemisphaericaexon
TCONS_00007487-exon-sc0000077-1510915933:328500..328604TCONS_00007487-exon-sc0000077-1510915933:328500..328604Clytia hemisphaericaexon
TCONS_00007487-exon-sc0000077-1510915933:326158..327886TCONS_00007487-exon-sc0000077-1510915933:326158..327886Clytia hemisphaericaexon
TCONS_00007487-exon-sc0000077-1491911889:330332..330359TCONS_00007487-exon-sc0000077-1491911889:330332..330359Clytia hemisphaericaexon
TCONS_00007487-exon-sc0000077-1491911889:329528..329802TCONS_00007487-exon-sc0000077-1491911889:329528..329802Clytia hemisphaericaexon
TCONS_00007487-exon-sc0000077-1491911889:329145..329243TCONS_00007487-exon-sc0000077-1491911889:329145..329243Clytia hemisphaericaexon
TCONS_00007487-exon-sc0000077-1491911889:328500..328604TCONS_00007487-exon-sc0000077-1491911889:328500..328604Clytia hemisphaericaexon
TCONS_00007487-exon-sc0000077-1491911889:326158..327886TCONS_00007487-exon-sc0000077-1491911889:326158..327886Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000077supercontigsc0000077:326158..330359 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0535892	0.12871	0.0964163	0.131506	9.0557	5.15827	16.6752	12.7598	18.5459	21.7732	16.9288	28.2305	0.578554	0.509447	0.342837	0.275842	0.278935	0.455215	1.11967	0.604849	2.29992	2.62879	0.771898	1.00966	0	0	0.545854	1.05684	0.85023	0.519567
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007487 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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