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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007455 ID=TCONS_00007455|Name=TCONS_00007455|organism=Clytia hemisphaerica|type=transcript|length=2328bp
tAAAAACCTCAGACTCAAGCTGCatcatttttattcttttcGGGATATTT
TTATACTTTAAAAGTGTGAACTGTGAACTGTCCAGGTTAtgtgtttttta
atgaaattttaattGAAACGAAAAGGAGGTTGAAATGGAACGCTAGATGA
AGAAGTCGCGTGCTAACTGAAATATCGAACCAAACAAATTGTCTTTTGGT
CTTTGGAATCAAAAAAATGGAGAATCAGGCAATTGATGAACTATACTGAT
CGAAGGATTTACGGAGGACAAAAAATCCAAATTCgtgaatttagaaaaat
aagaatttacgAAGTGACGGAAAAATTATACGATTGACCAACAAAGGTGT
TTCGATTCATTCCCGGTCTCTCACTTGCTTTCCAAGTGCGCTAcaattaa
acgattttttacGAACACAATAGAGTTTTACGAACTTGACGAGTAATAGA
GTTTTACGAACTTGACGAGTAATAGAGTTTTACGAACTTGACGAGTAACA
GAGTTTTACGGACTTGACGAATAATAGAGTTTTACGGACTGAGGAGCAAA
ACAGAGTTTTACGAACTTGACAAATAATAGAGTTTTACGAACTGAGGAGC
AAAAGGTTTTACGAACTCGATGAATAATAGAGTTTTACGAACTTGGGAAC
AATAGAGTTTTACGAACTGCAGAGCAAAACAGAGGTTTACGAAGTGAGGA
ATAAAATAGAGTTTTACGAACTTGAGAATATAATAGAGTTTTACGGGCTG
AGGAACAAAACAGAATTTTACGAACTGAGGAATAATAAAGGAACAATTAA
TTTTCACAAACTTCGTCAGTTTGATAAAGTTTGTGAAGACCAAAATGAAG
GAAGAGACGAAAGACAACACACAAGAAGAAGAGATCGAACCAGCTTCAAA
GggtgttgtttttctcttctgtttCATGTTACTCACTAAAGGAATCACAG
CGtgtattttccagaccaccacTTATTTTTTCATGCTACGAATCATGGAT
GGGAAAATTGAACAGGCAAATTATCTATACACGACACTATCAACCGTCAA
AGCGATTACCAAATTCATTGGTGTTTTTATATGTGGTCTGGCTATCGATA
GTCAAAAAATGAAGTTACGAACAATAATGCAAATCTTCACAACCTTTCAC
ACACTAGGCTTCATTTTCTCGTTTTTTCCAAATATCCATTTGTTGTTTAT
TGGAAATATATTTCGCGAATTCGGTGCCGGTTACATTATCGTAGTGAAAG
TGAAACTAACATTTAGCAAAAAGCAATCTTCTTTCGCGTTGGTTTGTACG
GTTTTCGCCAAAATCATGGGCATTATCGCCGGCtcattattatcaatttt
cgTTATCCCGAAAGTTGAATTCAAGattggaaattttgatgtcTGGTATG
GGAATTTTCCTTGCTTGGTTTCGTTTACTCTTTATTTCGTCATCTTGATC
TTATGTTCTAACCTCATGACTGATAACGATGACCCGATACAAATCCTAAA
ACGCATTAATAAACGGAAGAAAGAAAAATCCTTTTGGCGGAACGGTTTTG
AACTTTGTAAAAATATCGCGTACCTTGTTATACTAATGTTTAGTATATAT
TTCTACATGGTGGTAGAGGCGTATAAGAATTACCGATCCATTAATTACCT
ACATTGCTATGGTTTCGGTGTACAATGGCTTGGTGCCATGCTTCTCGTCG
CTTATACCgccaaattatttttcatgccCGCTTTTAAGATCATTAATGAT
CATtggcaaaaaattgacttcatggTCGTTATAATCCTACCTTACTTAGC
TTTTGGTTTATCACAAACAACAGTTGGTAGTCTTTTCTGCGACTCGTACC
TTCTCAGTGATATGTATGTCAAAATGATGTTTACAGCCGGCTACCAAATC
CCGCCCGTTCTTCTCATAGCCAAATTAGTGGATAATAAAATGAAAGGAAC
CGCCCAATCTCTATGCAGCATGTGTCAGAAACTTAGTGCCATCATTATTG
GTGCTTTAGGAACAATTTTTGTCAATCATCAAGAACCTTTTATGTTTTGC
TTAATGTTGATTGGTGTATTTTTGGTTGCCATGGCGATCTGGAAACGTCA
ACTTTTTGTCAATCTTTGATTTACTTTTACTGTAGTTTTACATttgattt
aatttcatttcatttatgTACCTTAACGGACATTTTACGCCGGCCCCAAT
TTTACGCTGAATAATGGCCGGTGTAAAAGAGTCAGTGTAAAAGGGTCGGT
GTAAAAAGGAccgataagatttttttttaagcaTTCTTAGTTAGATTTGG
GAAAAAGTTAATTTATCGAAAACACTCG Run BLAST on NCBI protein sequence of TCONS_00007455-protein >TCONS_00007455-protein ID=TCONS_00007455-protein|Name=TCONS_00007455-protein|organism=Clytia hemisphaerica|type=polypeptide|length=424bp
MKEETKDNTQEEEIEPASKGVVFLFCFMLLTKGITACIFQTTTYFFMLRI
MDGKIEQANYLYTTLSTVKAITKFIGVFICGLAIDSQKMKLRTIMQIFTT
FHTLGFIFSFFPNIHLLFIGNIFREFGAGYIIVVKVKLTFSKKQSSFALV
CTVFAKIMGIIAGSLLSIFVIPKVEFKIGNFDVWYGNFPCLVSFTLYFVI
LILCSNLMTDNDDPIQILKRINKRKKEKSFWRNGFELCKNIAYLVILMFS
IYFYMVVEAYKNYRSINYLHCYGFGVQWLGAMLLVAYTAKLFFMPAFKII
NDHWQKIDFMVVIILPYLAFGLSQTTVGSLFCDSYLLSDMYVKMMFTAGY
QIPPVLLIAKLVDNKMKGTAQSLCSMCQKLSAIIIGALGTIFVNHQEPFM
FCLMLIGVFLVAMAIWKRQLFVNL Run BLAST on NCBI transcript from alignment at sc0000077:148704..151110+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007455 ID=TCONS_00007455|Name=TCONS_00007455|organism=Clytia hemisphaerica|type=transcript|length=2407bp|location=Sequence derived from alignment at sc0000077:148704..151110+ (Clytia hemisphaerica)
tAAAAACCTCAGACTCAAGCTGCatcatttttattcttttcGGGATATTT
TTATACTTTAAAAGTGTGAACTGTGAACTGTCCAGGTTAtgtgtttttta
atgaaattttaattGAAACGAAAAGGAGGTTGAAATGGAACGCTAGATGA
AGAAGTCGCGTGCTAACTGAAATATCGAACCAAACAAATTGTCTTTTGGT
CTTTGGAATCAAAAAAATGGAGAATCAGGCAATTGATGAACTATACTGAT
CGAAGGATTTACGGAGGACAAAAAATCCAAATTCgtgaatttagaaaaat
aagaatttacgAAGTGACGGAAAAATTATACGATTGACCAACAAAGGTGT
TTCGATTCATTCCCGGTCTCTCACTTGCTTTCCAAGTGCGCTAcaattaa
acgattttttacGAACACAATAGAGTTTTACGAACTTGACGAGTAATAGA
GTTTTACGAACTTGACGAGTAATAGAGTTTTACGAACTTGACGAGTAACA
GAGTTTTACGGACTTGACGAATAATAGAGTTTTACGGACTGAGGAGCAAA
ACAGAGGTTTACGAACTTGACGAATAATAGAGTTTTACGAACTGAGGAAC
AAAACAGAGGTTTACGAACTTGACGAATAATAGAGTTTTACGAACTTGAC
AAATAATAGAGTTTTACGAACTGAGGAGCAAAAGGTTTTACGAACTCGAT
GAATAATAGAGTTTTACGAACTTGGGAACAATAGAGTTTTACGAACTGCA
GAGCAAAACAGAGGTTTACGAAGTGAGGAATAAAATAGAGTTTTACGAAC
TTGAGAATATAATAGAGTTTTACGGGCTGAGGAACAAAACAGAATTTTAC
GAACTGAGGAATAATAAAGGAACAATTAATTTTCACAAACTTCGTCAGTT
TGATAAAGTTTGTGAAGACCAAAATGAAGGAAGAGACGAAAGACAACACA
CAAGAAGAAGAGATCGAACCAGCTTCAAAGggtgttgtttttctcttctg
tttCATGTTACTCACTAAAGGAATCACAGCGtgtattttccagaccacca
cTTATTTTTTCATGCTACGAATCATGGATGGGAAAATTGAACAGGCAAAT
TATCTATACACGACACTATCAACCGTCAAAGCGATTACCAAATTCATTGG
TGTTTTTATATGTGGTCTGGCTATCGATAGTCAAAAAATGAAGTTACGAA
CAATAATGCAAATCTTCACAACCTTTCACACACTAGGCTTCATTTTCTCG
TTTTTTCCAAATATCCATTTGTTGTTTATTGGAAATATATTTCGCGAATT
CGGTGCCGGTTACATTATCGTAGTGAAAGTGAAACTAACATTTAGCAAAA
AGCAATCTTCTTTCGCGTTGGTTTGTACGGTTTTCGCCAAAATCATGGGC
ATTATCGCCGGCtcattattatcaattttcgTTATCCCGAAAGTTGAATT
CAAGattggaaattttgatgtcTGGTATGGGAATTTTCCTTGCTTGGTTT
CGTTTACTCTTTATTTCGTCATCTTGATCTTATGTTCTAACCTCATGACT
GATAACGATGACCCGATACAAATCCTAAAACGCATTAATAAACGGAAGAA
AGAAAAATCCTTTTGGCGGAACGGTTTTGAACTTTGTAAAAATATCGCGT
ACCTTGTTATACTAATGTTTAGTATATATTTCTACATGGTGGTAGAGGCG
TATAAGAATTACCGATCCATTAATTACCTACATTGCTATGGTTTCGGTGT
ACAATGGCTTGGTGCCATGCTTCTCGTCGCTTATACCgccaaattatttt
tcatgccCGCTTTTAAGATCATTAATGATCATtggcaaaaaattgacttc
atggTCGTTATAATCCTACCTTACTTAGCTTTTGGTTTATCACAAACAAC
AGTTGGTAGTCTTTTCTGCGACTCGTACCTTCTCAGTGATATGTATGTCA
AAATGATGTTTACAGCCGGCTACCAAATCCCGCCCGTTCTTCTCATAGCC
AAATTAGTGGATAATAAAATGAAAGGAACCGCCCAATCTCTATGCAGCAT
GTGTCAGAAACTTAGTGCCATCATTATTGGTGCTTTAGGAACAATTTTTG
TCAATCATCAAGAACCTTTTATGTTTTGCTTAATGTTGATTGGTGTATTT
TTGGTTGCCATGGCGATCTGGAAACGTCAACTTTTTGTCAATCTTTGATT
TACTTTTACTGTAGTTTTACATttgatttaatttcatttcatttatgTAC
CTTAACGGACATTTTACGCCGGCCCCAATTTTACGCTGAATAATGGCCGG
TGTAAAAGAGTCAGTGTAAAAGGGTCGGTGTAAAAAGGAccgataagatt
tttttttaagcaTTCTTAGTTAGATTTGGGAAAAAGTTAATTTATCGAAA
ACACTCG Coding sequence (CDS) from alignment at sc0000077:148704..151110+ >TCONS_00007455 ID=TCONS_00007455|Name=TCONS_00007455|organism=Clytia hemisphaerica|type=CDS|length=1275bp|location=Sequence derived from alignment at sc0000077:148704..151110+ (Clytia hemisphaerica)
ATGAAGGAAGAGACGAAAGACAACACACAAGAAGAAGAGATCGAACCAGC
TTCAAAGggtgttgtttttctcttctgtttCATGTTACTCACTAAAGGAA
TCACAGCGtgtattttccagaccaccacTTATTTTTTCATGCTACGAATC
ATGGATGGGAAAATTGAACAGGCAAATTATCTATACACGACACTATCAAC
CGTCAAAGCGATTACCAAATTCATTGGTGTTTTTATATGTGGTCTGGCTA
TCGATAGTCAAAAAATGAAGTTACGAACAATAATGCAAATCTTCACAACC
TTTCACACACTAGGCTTCATTTTCTCGTTTTTTCCAAATATCCATTTGTT
GTTTATTGGAAATATATTTCGCGAATTCGGTGCCGGTTACATTATCGTAG
TGAAAGTGAAACTAACATTTAGCAAAAAGCAATCTTCTTTCGCGTTGGTT
TGTACGGTTTTCGCCAAAATCATGGGCATTATCGCCGGCtcattattatc
aattttcgTTATCCCGAAAGTTGAATTCAAGattggaaattttgatgtcT
GGTATGGGAATTTTCCTTGCTTGGTTTCGTTTACTCTTTATTTCGTCATC
TTGATCTTATGTTCTAACCTCATGACTGATAACGATGACCCGATACAAAT
CCTAAAACGCATTAATAAACGGAAGAAAGAAAAATCCTTTTGGCGGAACG
GTTTTGAACTTTGTAAAAATATCGCGTACCTTGTTATACTAATGTTTAGT
ATATATTTCTACATGGTGGTAGAGGCGTATAAGAATTACCGATCCATTAA
TTACCTACATTGCTATGGTTTCGGTGTACAATGGCTTGGTGCCATGCTTC
TCGTCGCTTATACCgccaaattatttttcatgccCGCTTTTAAGATCATT
AATGATCATtggcaaaaaattgacttcatggTCGTTATAATCCTACCTTA
CTTAGCTTTTGGTTTATCACAAACAACAGTTGGTAGTCTTTTCTGCGACT
CGTACCTTCTCAGTGATATGTATGTCAAAATGATGTTTACAGCCGGCTAC
CAAATCCCGCCCGTTCTTCTCATAGCCAAATTAGTGGATAATAAAATGAA
AGGAACCGCCCAATCTCTATGCAGCATGTGTCAGAAACTTAGTGCCATCA
TTATTGGTGCTTTAGGAACAATTTTTGTCAATCATCAAGAACCTTTTATG
TTTTGCTTAATGTTGATTGGTGTATTTTTGGTTGCCATGGCGATCTGGAA
ACGTCAACTTTTTGTCAATCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007455-exon-sc0000077-1491911889:148704..149259 | TCONS_00007455-exon-sc0000077-1491911889:148704..149259 | Clytia hemisphaerica | exon |
| TCONS_00007455-exon-sc0000077-1510915933:148704..149259 | TCONS_00007455-exon-sc0000077-1510915933:148704..149259 | Clytia hemisphaerica | exon |
| TCONS_00007455-exon-sc0000077-1575043694:148704..149259 | TCONS_00007455-exon-sc0000077-1575043694:148704..149259 | Clytia hemisphaerica | exon |
| TCONS_00007455-exon-sc0000077-1491911889:149339..151110 | TCONS_00007455-exon-sc0000077-1491911889:149339..151110 | Clytia hemisphaerica | exon |
| TCONS_00007455-exon-sc0000077-1510915933:149339..151110 | TCONS_00007455-exon-sc0000077-1510915933:149339..151110 | Clytia hemisphaerica | exon |
| TCONS_00007455-exon-sc0000077-1575043694:149339..151110 | TCONS_00007455-exon-sc0000077-1575043694:149339..151110 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000077 | supercontig | sc0000077:148704..151110 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR020846 | MFS_dom |
Blast
The following BLAST results are available for this feature:
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