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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007360 ID=TCONS_00007360|Name=TCONS_00007360|organism=Clytia hemisphaerica|type=transcript|length=1458bp
ATATTAGACAAAATAAtcatttcattaaaaattatcaCTACAACATCAAG
CTTTATTCCAACACCGCGTCTATTCTACtaataacaaaaatatcaaacca
ATAAGTGTGACATCATTTAAACACAAAACTTTTCTTAAGTACAGGGAATT
ACCCTATGAACATTAGGGGAAAATCaactgacttttttcttttatttatc
aaTCTATAGTTAGGGAATTCCCCTGATATAGTGTTTAACTAAAGGGTAAT
ACCAAACAAACTCCAAAGGGGAAGACttaaatgtttatttatttttaata
tttttctagaaaaggtaaaaaagtaGCACTTAGTATTCATTTGTACTAAC
TGTTTTCCTAGATTTTCTACTTGACGCCACCCTAGCAGTCACTTAGTACC
ATcaagtactaactgatttttgaaaattttgtaggtataccaccacggta
ctaaccggcatgatgtcttgtactaactgcttgaccccccctgtAGCAGT
CTAAACGTTGAAGTACgataaattttcgaaagatattATTAGGACTAAAG
TAATCTGGATTAAATTGTCTTTGGTATTTACTTTACTTCTACAATTCTTT
GACAATCCAATTNATTTTCGAAAGATATTATTAGGACTAAAGTAATCTGG
ATTAAATTGTCTTTGGTATTTACTTTACTTCTACAATTCTTTGACAATCC
AATTCCTTATctaatgtttctttttttttatatagcaaaaataaatgaaa
caatatcaaaaatgaaagtgaaagtgaaaagtTGGATGGCAGTAGCTGTT
TGGCATTGGATTACAAATGATGATACGTGTGGTATATGCCGTATGCAGTT
CGATGGTTGTTGTCCTGATTGCAAAGTTCCCGGTGATGACTGCCCATTAG
TATGGGGAAGGTGTTCTCATGTTTTTCATATGCATTGTATTTTGAAATGG
TTGAACTCACAACAGTCACAACAGCATTGTCCCATGTGTCGTAGAGAATG
GCAATTCAAAGATTGATACATATGTTTGGTGACTGCTATTGTTCATTATG
CTATCCTTCACCGGATAGGTATTCGGAATGTAAACTGAATCTGTTTTCAT
GAAAAATTCTGCAATGGATATGGTAAATGCCATAGTTAAAGTTGGTCTTT
TTAGATAGATGATCTGAAAAGAATCTCATCTGCTTGGTGATTAATGTTGG
AATAAACACATTCAACAATTTAGAATATTGtacatatttttctaatttta
gatATTTATTGTAAgttatagtgtagaaaaaaactGTCTAGAACCTCAGT
GTTTAGATCTTCGATAGTATTGTGGGAAGTAGTCATTAAATACTTTCCTT
GTCAAATTCTGAAAAGACTTTTGTCTAGAATTCATTTTTAAACACTCTTC
CTTCTCTATTGGCGAAAGAAAAGCAGTGTCCATTCACTGAGCCGGGGGTG
CACTCCGG Run BLAST on NCBI protein sequence of TCONS_00007360-protein >TCONS_00007360-protein ID=TCONS_00007360-protein|Name=TCONS_00007360-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MFLFFYIAKINETISKMKVKVKSWMAVAVWHWITNDDTCGICRMQFDGCC
PDCKVPGDDCPLVWGRCSHVFHMHCILKWLNSQQSQQHCPMCRREWQFKD Run BLAST on NCBI transcript from alignment at sc0000075:717029..718486 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007360 ID=TCONS_00007360|Name=TCONS_00007360|organism=Clytia hemisphaerica|type=transcript|length=1458bp|location=Sequence derived from alignment at sc0000075:717029..718486 (Clytia hemisphaerica)
CCGGAGTGCACCCCCGGCTCAGTGAATGGACACTGCTTTTCTTTCGCCAA
TAGAGAAGGAAGAGTGTTTAAAAATGAATTCTAGACAAAAGTCTTTTCAG
AATTTGACAAGGAAAGTATTTAATGACTACTTCCCACAATACTATCGAAG
ATCTAAACACTGAGGTTCTAGACagtttttttctacactataacTTACAA
TAAATatctaaaattagaaaaatatgtaCAATATTCTAAATTGTTGAATG
TGTTTATTCCAACATTAATCACCAAGCAGATGAGATTCTTTTCAGATCAT
CTATCTAAAAAGACCAACTTTAACTATGGCATTTACCATATCCATTGCAG
AATTTTTCATGAAAACAGATTCAGTTTACATTCCGAATACCTATCCGGTG
AAGGATAGCATAATGAACAATAGCAGTCACCAAACATATGTATCAATCTT
TGAATTGCCATTCTCTACGACACATGGGACAATGCTGTTGTGACTGTTGT
GAGTTCAACCATTTCAAAATACAATGCATATGAAAAACATGAGAACACCT
TCCCCATACTAATGGGCAGTCATCACCGGGAACTTTGCAATCAGGACAAC
AACCATCGAACTGCATACGGCATATACCACACGTATCATCATTTGTAATC
CAATGCCAAACAGCTACTGCCATCCAacttttcactttcactttcatttt
tgatattgtttcatttatttttgctatataaaaaaaaagaaacattagAT
AAGGAATTGGATTGTCAAAGAATTGTAGAAGTAAAGTAAATACCAAAGAC
AATTTAATCCAGATTACTTTAGTCCTAATAATATCTTTCGAAAATNAATT
GGATTGTCAAAGAATTGTAGAAGTAAAGTAAATACCAAAGACAATTTAAT
CCAGATTACTTTAGTCCTAATaatatctttcgaaaatttatcGTACTTCA
ACGTTTAGACTGCTacagggggggtcaagcagttagtacaagacatcatg
ccggttagtaccgtggtggtatacctacaaaattttcaaaaatcagttag
tacttgATGGTACTAAGTGACTGCTAGGGTGGCGTCAAGTAGAAAATCTA
GGAAAACAGTTAGTACAAATGAATACTAAGTGCtacttttttaccttttc
tagaaaaatattaaaaataaataaacatttaaGTCTTCCCCTTTGGAGTT
TGTTTGGTATTACCCTTTAGTTAAACACTATATCAGGGGAATTCCCTAAC
TATAGAttgataaataaaagaaaaaagtcagttGATTTTCCCCTAATGTT
CATAGGGTAATTCCCTGTACTTAAGAAAAGTTTTGTGTTTAAATGATGTC
ACACTTATtggtttgatatttttgttattaGTAGAATAGACGCGGTGTTG
GAATAAAGCTTGATGTTGTAGtgataatttttaatgaaatgaTTATTTTG
TCTAATAT Coding sequence (CDS) from alignment at sc0000075:717029..718486 >TCONS_00007360 ID=TCONS_00007360|Name=TCONS_00007360|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at sc0000075:717029..718486 (Clytia hemisphaerica)
TCAATCTTTGAATTGCCATTCTCTACGACACATGGGACAATGCTGTTGTG
ACTGTTGTGAGTTCAACCATTTCAAAATACAATGCATATGAAAAACATGA
GAACACCTTCCCCATACTAATGGGCAGTCATCACCGGGAACTTTGCAATC
AGGACAACAACCATCGAACTGCATACGGCATATACCACACGTATCATCAT
TTGTAATCCAATGCCAAACAGCTACTGCCATCCAacttttcactttcact
ttcatttttgatattgtttcatttatttttgctatataaaaaaaaagaaa
cat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007360-exon-sc0000075-1491911889:717029..718486 | TCONS_00007360-exon-sc0000075-1491911889:717029..718486 | Clytia hemisphaerica | exon |
| TCONS_00007360-exon-sc0000075-1510915933:717029..718486 | TCONS_00007360-exon-sc0000075-1510915933:717029..718486 | Clytia hemisphaerica | exon |
| TCONS_00007360-exon-sc0000075-1575043694:717029..718486 | TCONS_00007360-exon-sc0000075-1575043694:717029..718486 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000075 | supercontig | sc0000075:717029..718486 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005680 | anaphase-promoting complex |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004842 | ubiquitin-protein transferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005680 |
anaphase-promoting complex |
| molecular_function |
GO:0004842 |
ubiquitin-protein transferase activity |
Blast
BLAST of TCONS_00007360 vs. Swiss-Prot (Human)
Match: APC11 (Anaphase-promoting complex subunit 11 OS=Homo sapiens GN=ANAPC11 PE=1 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 4.745e-42 Identity = 64/84 (76.19%), Postives = 74/84 (88.10%), Query Frame = 3
Query: 762 MKVKVKSWMAVAVWHWITNDDTCGICRMQFDGCCPDCKVPGDDCPLVWGRCSHVFHMHCILKWLNSQQSQQHCPMCRREWQFKD 1013
MKVK+K W VA W W+ ND+ CGICRM F+GCCPDCKVPGDDCPLVWG+CSH FHMHCILKWL++QQ QQHCPMCR+EW+FK+
Sbjct: 1 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCILKWLHAQQVQQHCPMCRQEWKFKE 84
The following BLAST results are available for this feature:
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