TCONS_00007330 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007330
Unique NameTCONS_00007330
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2685

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007330 ID=TCONS_00007330|Name=TCONS_00007330|organism=Clytia hemisphaerica|type=transcript|length=2685bp
AANTGCTGGATGTTCAATCGATATTCGATTTTTCCCTTTCGATTACCAGA
AATGTCCGTTACAATTTGGTTCGTGGTCTTATTCGAGTCCTGAGTTGGAT
TTGGAGTTGACAAGAAATGATATTGACTTGAGTTTTTATCAAGAAAGTTC
ACAATTTTGGTTGATTCGAACGGAAGCTGTTCGGAATAGTGTCAAATACA
GTTGCTGTCCCCACCCTCTGACAGACATCACATTCACAATCGTTCTTAAG
CGGAAAGCCGGTTTTCACATGTTTAATGTTATCGTTCCATCACTCGTCCT
AACATTCTACGCTTTGTTCATATTCGCATTCCCCGAAGAGACTGGGGAAA
GAATGGGATTGGCTATGGATTGCTTTTTAACCATTTCTATTCTTATGATG
ATGGTCTCGGATATGATGCCGATTGATTCCAATGTTACACCGCTATTGGG
TGCTTTTATGTTGGTCAGTATGCTGTCAATCACTTTCTCAATTTttatGA
ATGCAGTATGTTTTAACATGCACCGTTCCGTTGCTGTACCAAATTGGCTT
CATCATATTATTTTCAATCGAATACTACCTCTGACTGTCTTCAAATCATG
TTTAAACAGTATTCGAAAATCTGGAAACTGTAGTAAATACGCGTGTTGCG
AGGGTGTGTTTGCTGCCTCGATACGTCGTAAACAGAGCTCTACAACTCGA
TATTTTGAAGAAATGGACAGGTTAGAGGAACTGAAAAAATACGCAGCGAA
ATTCACTCCTGCGCATGCGTATGAGGCGAATACAGTTTTAGATACGAATT
CCCTTGATGAAGAGTTTGTTGAAACGTATGAATTCATTCAAATGTATTTT
CCAAAGCCACTATCCAATGATGAGGCGGTTGGTGGAAATGATGGTAACCC
GCCCACTGACGCCCCTTCCTTCAAGTCTCAAAACGAAAGGGATAAAGAGA
ATGTAGAAACACTTCTTGAAAATGTTTACGGTGAAGAGGAGTCTGAATAT
ATCTTAGATTTTTGGAGATGTGTTGCACAAACTACAGACCGTGTTTGCTT
GATCTTTGTCTCCGTTTTATACGCTTCTATTTCTATAGGACTTATGTATC
AAGTACCGAGTGTCAGCTTtacttgattttattttgtagtaagtgatggt
tgggaaaattaaattttgcgaaattttggcaaatcagccaaaatttcttc
ccttaaggtataccAATAAGAAACTATTTTTGTTAGAAAGCCCTAAAGAG
GCCTAAAAGAAAATGAAGGAATTAAATACCAGTTGGTCGAAGATTActtg
aaatttctaaaatccAGTGTAGTTTTCGAAAGTAAGGAATAGAATGCGCT
GAAGTTTTACCAAACTTGACTCAATTTATTGTTGACATTATTTTCTAggt
tatatatatttttagggTTTTCTTATGTAAATAGTTTTTTTCTAATCCTA
TAAACTGAcacaagatatttttctcaTGTAAATCGACAAAtctaaaaact
attttttctaaaaatgttagAACAAGTTGTTCCGTAAAGTAAATTTGAAT
TGTAAAATGTTACCGGGAATTCAAAggtaaaaaaatgtataaaactGCAC
GGTTATTGTGATTTTCCTCTGATTTCATTTAAATCTTTCAGGGGTACTGC
GTCATAACGTATCAACCGTTTATCAACACCTGCACCATTTCGATCAAAAT
ACCACGAATTTTTATCTCTCCCTCCTTCTTCAGtcgaacaacaacaacaa
tttcTCTTACAATCCACTGCAAAAGAAACTACGTTTACACTCaataaaat
caataataaaACTTCAGCCACCAATAAAACTACTAGTAAATTCATCTCCA
TACGTATTCTTGGGAGTGTCTCAAGCGAACATCGAACATCAAAATATCCA
CTGGTAACATTAGCTGCTAAACCATCATTAAAAGTCGCCAGGTTATCGTA
ATCTTCAAAATGTTGAACACCTCCTAAATTAGTTGAATGTTCGATAAGAC
ATTCCTCATAGGGTGGAATCATCAATAAAACATAAATATTTATCATTGCT
AATCGacagaaaatttggaaaaaatcaaaaccaaatttcatactatatat
aattttattaccAGTGTAGATAGCTATGAAACCCAACACTATATTTATGA
TAAGTGGTAAGCTAGTCCATTCAGGAAAAGCATAatcttgttttaaaaag
aacatCGATATAGACTGTGGATCAGCATGTTTAGCCTGGATGTCGTTGAC
ATATAAACCACCCAAAACTGTATTGAGAACAACCAATAAAAGAGTCAGAA
ATGTCACCACTTTTTGAACAGTGTTCATCAATGATTCTTCCATGTTCAAA
AAACTTACTCAGGATACTTCAACTGTGTGATTTCATTCAATCATAGTTTT
ATCCAAAGCTGAGTTAATGGTTTCTTTAAAAATCGCGTGCCTTTTAACCT
TCCTCTTGAGTATAAACCGAGGATTTGTCTCcttctccaaatttttactt
GTACCATACAAATCTAAAAATCTTGTTTCATTGAAGAGAAAAGGGTTTTA
CTTCCTTTCTAAATGCGAATAGGTTTAAGCTTATACAAGGACCCTAGAAT
AAGAAAGACATATTATCGATTGAAAATGGGAACTAGCGGGTTCACCTTAG
ATACTACGAAAGGCACCAATCAAACGGAAGCTCCT
Run BLAST on NCBI

protein sequence of TCONS_00007330-protein

>TCONS_00007330-protein ID=TCONS_00007330-protein|Name=TCONS_00007330-protein|organism=Clytia hemisphaerica|type=polypeptide|length=374bp
XAGCSIDIRFFPFDYQKCPLQFGSWSYSSPELDLELTRNDIDLSFYQESS
QFWLIRTEAVRNSVKYSCCPHPLTDITFTIVLKRKAGFHMFNVIVPSLVL
TFYALFIFAFPEETGERMGLAMDCFLTISILMMMVSDMMPIDSNVTPLLG
AFMLVSMLSITFSIFMNAVCFNMHRSVAVPNWLHHIIFNRILPLTVFKSC
LNSIRKSGNCSKYACCEGVFAASIRRKQSSTTRYFEEMDRLEELKKYAAK
FTPAHAYEANTVLDTNSLDEEFVETYEFIQMYFPKPLSNDEAVGGNDGNP
PTDAPSFKSQNERDKENVETLLENVYGEEESEYILDFWRCVAQTTDRVCL
IFVSVLYASISIGLMYQVPSVSFT
Run BLAST on NCBI

transcript from alignment at sc0000075:603103..612118-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007330 ID=TCONS_00007330|Name=TCONS_00007330|organism=Clytia hemisphaerica|type=transcript|length=9016bp|location=Sequence derived from alignment at sc0000075:603103..612118- (Clytia hemisphaerica)
AANTGCTGGATGTTCAATCGATATTCGATTTTTCCCTTTCGATTACCAGA
AATGTCCGTTACAATTTGGTTCGTGGTCTTATTCGAGTCCTGAGTTGGAT
TTGGAGTTGACAAGAAATGATATTGACTTGAGTTTTTATCAAGAAAGTTC
ACAATTTTGGTTGATTCGAACGGAAGCTGTTCGGAATAGTGTCAAATACA
GGTAATTCTTTTTCTTAGAAAAGAATGCGCTTAAATATATCAAGAAATAC
AGAACTAAAGGCTTGGGGACACGAAAAGTTTTTTTGCGTTGGTGCAATGC
AACATGCTCCATCCCATCAACACAAGAAAAAAGTGCGTATCCCATGGTTT
TCTTTTTTGTTTCATTGGACAAAAAGTGAGAGAAATTCTCAATTACCACG
CTGATTTTGTCCCTGTGACAAAAGTGAGAGACACACAAATGTTATTAAAA
GTATTGTCGATTTCACTTTTATTGTTAGACAAGAAAATGGGGTAGAGACA
AAAAACCGTTTTAAGTTGGTGGGATGGAGCATGTTGCATTGCACAAACGC
GAAAAAACTTCTCGTGTCCCCAAGCCTTAACTTACAATTGCTATAAGGTG
TGGTGTTTCATGCTGGCGCAATCTTCAAGCAATGCAGGTGTATTGCAGAT
TTTATTTCAATTTTTATTTTTTTTTGAAGTTCTTTATTTCTTGATATTTT
GCTGGAATTTTTTCGAATTTTATTGAGCACTTTGTGATTCTATTTATTTC
ACCTAAATTTGTCAAATATAGAAAACAAGTGCTATTAGTTCCAATTTGTT
TTCTGCTGAAAAGTTTAATTTCTAAATGAATATTCCTCTACAGAATTTCA
GAAAGATAATTCTACTTTAAGTGTCAGAAAAAAACGGATAACTTAAAATT
CAACCTGAGGGGAGTGCTTAAATCTTTCGTTTCGCATCTTCGAATCGTTA
TTAATAAGTTCCAATCAGGGGATAATGATTAATGAAATTGTTATGACTAA
AGCCAAAAATGATATATCGATGCTAATTTAAAAGTTATTCCTAGAAAAGA
AGAAAGTCTAAAAACGCTAGCGAGAGACGTGACGCTGGGAATAAAGGATT
CCAACGCGGTTGGGTAGTATGTTTGCTTCAAATGCCTGGGTATTGAGTTT
AGAAAGAAATTTATTTAGAAATCATTGATTGTCTTTTCATAGACAATCTC
CCTAGGAATTCATGACATTCATGACGTAATTTTTTCTATGGAAATACCCC
GGTTTTAGCCAGTAGTGGCAAGTTTAAACTAGAAAAAAGTTTTATAAAAT
TTACCACCACTTGCAAAAACGGGGTCTTTCCGTAGAAAACATTACGTCAT
GAATATCATAAATATGTTATACACTGTAAAGGCTTTAGTGTTTGTATAAA
TCAAACCCTGTATGTCGCGAGTTTCCCTTATGAATGTCTAATCTTTCTAG
AAATTTCTCAAACTAAAATTTAAATTTCCTCCTTCTATCTTTTTAGAAAT
AATATAATAAGTATATACTTAAGATCAATAGGCCTTTGTTATTTGACCTT
TGTCTTAAAATTTGTAATCGGTATTAGAAATTCTTTAAGAATGACTAATT
GATCTGACGGTTTTTTTAACTCGATTTATTTTCACAAGAAGCTTTAAGCC
TTCTGACACAGAAGTTCAAGAGTGGATCCATGAATCAACAACGTTATAAA
GTTACTGGTTGTTACGAATCTCATGCAACACACTTGTGTAGAAGATGTCG
CAATCAAGATTCGGACCATTTTTCATCAATCAAAATTGTAAAGTAAAAGA
CTGTAAGGAAAATCATGGCAAACATACATGTAGGCTATGTTGGGACATCG
ATTCGACTCATTTCTCGTCTGGATGCCCTCGTGCGCAGACTTTATACCAT
GGATCTAAAATCAGGGTTGTCAACCCGATATCGATTGATGGATTGAAGGG
AAGCGATGATGGACGTCTAGGTCCTGGCATCTACTTTGTAGAAACATTGA
AACAGGCAGAATTAATCAGTAGAAGACATCATGGCAATGATAACGATGCT
GTTGTATTCAAATGTAGAGTTTTCATGGGCAATATGGCTGAACTCAAAAA
TCAAGCTGGAGAAGCATGGCAGCAGAACTTTGATTCGGCGAAATCATTGC
ATCCTAAGTGGGCTGGAATCAATCACAAATTTACTGAGTATTGTTTAAAA
AATAAAGACAACTGCATTGTAACCTCCATAATTATTAACAATAAAGAAAT
TGTTAAAGATGAAGATAAATCTTGGGGAGAGGCAGAGCGCTACATCCGTA
ATCTTGACCCAAACGCATCAAAGAGTGTTATAAAGAAAGCATTGCAAGGA
TTGCAAAATCTTACTGGATTTCAACAAGAAGATTTTGAGAAAATTAAATT
TCAATACACCTATTTGAAAAATGAGGCGAAGTCAATCATTAAAAAAGCTC
AACGTCGTAAAAACCGTCTGCAAATCAGAGGATTTAAAATGCCGAGCCCA
TCTGGAGTATTAAAACGATGGTATCTAATATTTAAAATCTTCATGACACT
TTTCTTCATTTGTAATTCAGCCTGGTCCGTACGACATCTTTTTCAACAAG
GTAACGAAAAAATGCGACCGTCATTGATTTCTTTCGCATTATTCTTCACC
ATCCAGTTCCTGGCAAATCTGTTTTTTCTAATCGTGCATGTTATTGATTC
AGACAGTACTGAGCCGCACAGAATTAGCCTACTAGTGTCAATTATCAAGA
TACTGATCTCATTTTTTATGGAAATGCCTATGCTGGTTTCACAGGCTGTG
GCCATGAACCATATAAACAATCTGGTATGGAGTGATTTTAACTGGGACCT
GGCAATACAATTTCAATTTATATTTAATCTTCTCTGTTTTTCTATCATCG
ATGTTTCCTATATTGCTTTGAATAAGAATGGATTCCGGTTTAGAAAACTC
TTTAAGTGGATTCCACTTGTAATAATTTTATCACCACTTATGGTTGCGTT
TATTTTCACACCCATCCATTTGGTTCAATTCGGTTTTGATTGGAAACTCA
GTGATCTCAAGGGCGAACTCGGAAATGATATAAACACTCATAACATACTA
AAAGCCTCATTGTACATCGGTATACTTGGTATATGGACTTGGCCGGTATC
ATTTTGGATATTTACAGTAGTTACTATTAAAACTATTTTTAACTATTCAA
TAAAATCTTTACGCAGAAAAAGAAATGTGGCAGTACTTTGTATGTGGTTT
TTAATATCGTTCGAGATGTGGTGTGGAGTCTGGTCGATATTTCATGTTTT
GAGATATGATAAGAAAACAGCTAAGGTTGTAACGATATTCATCATAAAAA
CTGTTGCAAGTTTGCTTTACTTCTTATGCTTTTGTCTTAATCGCATTAAG
TCAAAGAAATGGTTACTGGCTTATATGATTGCCAAAGCCATTATGGATTT
TGTACTTGACATGCCGATGCTGATAATTCAAATAGAGTTCCTAAAAGAAC
TCGAAGATCTTCTTTGGAGTGACCACGGTGGAATAGTGGCAATGCAAACT
TGGTATATTCTCCGAATTGTACCGTTTTTTGCCATACTTACTGTGTCACA
TTACGGATCTACAATATATGGTTTTTTCGACCTTCTTCAAGAAATCATAA
AATTTTTGGTACTACCCCTTATACCACTCTTATTAACCAGCGCATTTTTA
TTTGCTCCAGTGTATGTATCAGAATTCGGCTGGAACTTTACACCTACCTT
ACATGATTTACCGGGAAGAATTGGAGATAACACTGCAGTTGTTGATTTGC
TTTATATTTCACTCAGTTTCGGAGTTTTTGGACTATATCTTTGGTCAATA
TTACTTTGCCTGCTTGTTTTGGTTGTTGGTTTTAGATGCTTGAAGTTATT
TGACTCGGAAGATTAAATAGATTATTGTTTTTTTTTCTCATTTGAAAACA
ATCATTCTCCTGGAACACTAAAGGAAAGTCAATGAATAATTAGCTTTTTT
GTTGTTTTACCGTTGACTCTCTCTAATTCGATCTTCAAGGGACTAAAATT
TTTTTTCGAATTAGAGAAGGATTCGAATTACAGAAAGTATTAATTTTATA
CTAATTTCTAGCTGAGGGGACCAATATTTTAGTTCGAATTATAGAAGATT
CGCATAGTAGAGGTTCGAATTACAGAGAGTTGACTGTACTGTTAACCTTG
AGTTAAATTTAGTTCAAATTTGTAACCTATGATTTATATAAAGGTATGAA
AATTAATTTATTTAAATTTTGTTATATTGGGCTGAAACTTTTCAAGCCAG
AGAAAAAAAAGAGAATTCTACATTATACCGTAAAATGAGGATGGGCGAAC
TAAAACGAATATTGGAACGGAATTGCCTATTATTTTCCATTATTTTTCAT
TATTTTTATTGCACTTTTAGTATGGTTGTTAATGATCAATACACACTATA
ACTAGAAATAAAACTGATAATTATGTTTTTTTGTCTCTTTAAAATCAGAA
GAATCTTTCTTGCGTAATAAATACAGCTTTGACAGCTTTGTAACAACATC
CAAAATTGTAGGCTGCTGGCATCCACTAACGGATTCGTTCTCCTTTTAGA
CTACTACCTGGGGTTTTGTAGAGGTCTGCGATTCAGACTACCAAAATTGT
TAAAGCCTTCAGATGTTCTTAACTTTTAAATTGAGTTTTAAGCATAAAAA
TGTTCTTACATGTTCTTATTTTCACTATTTTCATGAGTATTTTTGGCCAT
TTTCCTTTGAAATAGGATGTCTTAGAGTCTGCAAAGCCTTAGAATGTTCT
GAACTTGTTCTTATAATATGTGTTGTAATAAATAAAAAACGTGTATTTAC
AGCAGCTTGTTATATTTCAAAGAATGTCGTGGTAATAATCCCTAGCAAGG
CTTTTTTCGCAGGTCCAGTACGCCCCCTCTCTATACATTTAATTTGCTTA
CGAATACAAACTAAGCACTGGAACTAAGATCATTTTGATGATGACACTTT
TTTCACAAAGAAGAGTGTACGAGCCAGCGAAATTTTGAGTTTTTGAGGTG
ATAAGGGGCGCCATTTTTGGTTTTTGGGCCCCTTATTTTTCGGCTCCCCT
TCTCAAAAGGGCTCCCCTGGTGGGGCGTGGGCCCACCTGGCCTCCCTGCC
ACCACGCCACTGGTTGGTTCATCATATATTTACCGAACAATTTGAAATTT
AATATAATTTACTGTAACTGTACTGTATTTGTACTCATTTGATAACAAAC
CGTGGGAAACTTTTAAGGAGTGGCCAAGCAGAATATGGCTCCCTTTTCAG
AGAATTTTTTATTTCTGGTGTCCTCTCTGTATACTTTTTATTCTCTTAAA
CAGTAAGACACTTTAGTTTAAACGTATCTAGATCTAGGGGGTAGTTATCC
AGTACATTTTCTTGTTGCATTTGTGGAACGCGAAAAAAACACTTTTCGCA
GAAGTCTAGCTAATCAACTTAGCTGGGATGCAATAACACTCAGCTTTTTT
TCTTTGTGAATTCTTAAACGCCCCTCGATTGGAGGGGCGTAGAAGGCGTA
TTTCCTTGATGATGCTTGCCATTTGGAAGCAAGGAAGAGTGGATTCGAAC
TTGAAGGGGTCAAGAATCTTCTTCGAGTTAGAAAAAAATTTGAATTACAA
GAGTATTTTTATTTTGTATGACTTTCAACTTAAGAGACATATGATTTATT
TCGAATTACAGAATTATAGAGGTTCCAATTAGAGAAAGTTGTCTTTATCT
TAAATATATTGTTTATTCCAGTTGCTGTCCCCACCCTCTGACAGACATCA
CATTCACAATCGTTCTTAAGCGGAAAGCCGGTTTTCACATGTTTAATGTT
ATCGTTCCATCACTCGTCCTAACATTCTACGCTTTGTTCATATTCGCATT
CCCCGAAGAGACTGGGGAAAGAATGGGATTGGCTATGGATTGCTTTTTAA
CCATTTCTATTCTTATGATGATGGTCTCGGATATGATGCCGATTGATTCC
AATGTTACACCGCTATTGGGTGCTTTTATGTTGGTCAGTATGCTGTCAAT
CACTTTCTCAATTTGTAAGTTCCATTTGCATAGTTTTCATTCTTAATCTT
AAGCATGTGAGGCCTTCTTTTTGAAGAAAAACACACATCTTTTCAAAAGA
TTACTTATTTGGTCCATTTTTTCAAAATATTTGTAATTTTGTACATTTTA
AAACGCAATTTCGTGTATTTTCCTAATTTAGTTTTCCAAGGAAAATTAAT
TTAGTGTATTTTCCAAAGAAAATCAAATACTTGTATTTTCCAAGGAAAAT
TAATTTAGTGTATTTTCCAAGGAAAATTAATTTAGTGTATTTTCCAAGGA
AAGTTAATTTAGTGTATTTTCCAAGGAAAATTAGTTTAGTGCATCATTCA
AAGAAAATCAAATGCGTGTATTTTCCAAGGAAAATTAATTTAGTGTATTT
TCCAAGGAAAGTTAATTTAGTGTATTTTCCAAGGAAAATTAGTTTAGTGC
ATCATTCAAAGAAAATCAAATGCGTGTATTTTCCAAGGAAAAGGATGTCT
GAAATTATTTGTATTTTCTGATACTGATAGTTGATACTGATAGCTGATTT
TTGATAAATCGGATTCATGTATTTCTAAGGGACATCGCGACGTTATTAAA
TCTCATCAATAAAATCTTGTTTTTCCATATAATGTATTTGCTAATGAGTA
TTGATGGTGTAATTTTACAAGAAAAATCTTGTAAATTTTCAAAGGAAAAT
CTGAATCTGAATACTGAATACTTTTTAACTTGCATTTGCTATTTACACGA
CTGCCTTCACTTTAATTTTTTTTAGTTATGAATGCAGTATGTTTTAACAT
GCACCGTTCCGTTGCTGTACCAAATTGGCTTCATCATATTATTTTCAATC
GAATACTACCTCTGACTGTCTTCAAATCATGTTTAAACAGTATTCGAAAA
TCTGGAAACTGTAGTAAATACGCGTGTTGCGAGGGTGTGTTTGCTGCCTC
GATACGTCGTAAACAGAGCTCTACAACTCGATATTTTGAAGAAATGGACA
GGTTAGAGGAACTGAAAAAATACGCAGCGAAATTCACTCCTGCGCATGCG
TATGAGGCGAATACAGTTTTAGATACGAATTCCCTTGATGAAGAGTTTGT
TGAAACGTATGAATTCATTCAAATGTATTTTCCAAAGCCACTATCCAATG
ATGAGGCGGTTGGTGGAAATGATGGTAACCCGCCCACTGACGCCCCTTCC
TTCAAGTCTCAAAACGAAAGGGATAAAGAGAATGTAGAAACACTTCTTGA
AAATGTTTACGGTGAAGAGGAGTCTGAATATATCTTAGATTTTTGGAGAT
GTGTTGCACAAACTACAGACCGTGTTTGCTTGATCTTTGTCTCCGTTTTA
TACGCTTCTATTTCTATAGGACTTATGTATCAAGTACCGAGTGTCAGCTT
TACTTGATTTTATTTTGTAGTAAGTGATGGTTGGGAAAATTAAATTTTGC
GAAATTTTGGCAAATCAGCCAAAATTTCTTCCCTTAAGGTATACCAATAA
GAAACTATTTTTGTTAGAAAGCCCTAAAGAGGCCTAAAAGAAAATGAAGG
AATTAAATACCAGTTGGTCGAAGATTACTTGAAATTTCTAAAATCCAGTG
TAGTTTTCGAAAGTAAGGAATAGAATGCGCTGAAGTTTTACCAAACTTGA
CTCAATTTATTGTTGACATTATTTTCTAGGTTATATATATTTTTAGGGTT
TTCTTATGTAAATAGTTTTTTTCTAATCCTATAAACTGACACAAGATATT
TTTCTCATGTAAATCGACAAATCTAAAAACTATTTTTTCTAAAAATGTTA
GAACAAGTTGTTCCGTAAAGTAAATTTGAATTGTAAAATGTTACCGGGAA
TTCAAAGGTAAAAAAATGTATAAAACTGCACGGTTATTGTGATTTTCCTC
TGATTTCATTTAAATCTTTCAGGGGTACTGCGTCATAACGTATCAACCGT
TTATCAACACCTGCACCATTTCGATCAAAATACCACGAATTTTTATCTCT
CCCTCCTTCTTCAGTCGAACAACAACAACAATTTCTCTTACAATCCACTG
CAAAAGAAACTACGTTTACACTCAATAAAATCAATAATAAAACTTCAGCC
ACCAATAAAACTACTAGTAAATTCATCTCCATACGTATTCTTGGGAGTGT
CTCAAGCGAACATCGAACATCAAAATATCCACTGGTAACATTAGCTGCTA
AACCATCATTAAAAGTCGCCAGGTTATCGTAATCTTCAAAATGTTGAACA
CCTCCTAAATTAGTTGAATGTTCGATAAGACATTCCTCATAGGGTGGAAT
CATCAATAAAACATAAATATTTATCATTGCTAATCGACAGAAAATTTGGA
AAAAATCAAAACCAAATTTCATACTATATATAATTTTATTACCAGTGTAG
ATAGCTATGAAACCCAACACTATATTTATGATAAGTGGTAAGCTAGTCCA
TTCAGGAAAAGCATAATCTTGTTTTAAAAAGAACATCGATATAGACTGTG
GATCAGCATGTTTAGCCTGGATGTCGTTGACATATAAACCACCCAAAACT
GTATTGAGAACAACCAATAAAAGAGTCAGAAATGTCACCACTTTTTGAAC
AGTGTTCATCAATGATTCTTCCATGTTCAAAAAACTTACTCAGGATACTT
CAACTGTGTGATTTCATTCAATCATAGTTTTATCCAAAGCTGAGTTAATG
GTTTCTTTAAAAATCGCGTGCCTTTTAACCTTCCTCTTGAGTATAAACCG
AGGATTTGTCTCCTTCTCCAAATTTTTACTTGTACCATACAAATCTAAAA
ATCTTGTTTCATTGAAGAGAAAAGGGTTTTACTTCCTTTCTAAATGCGAA
TAGGTTTAAGCTTATACAAGGACCCTAGAATAAGAAAGACATATTATCGA
TTGAAAATGGGAACTAGCGGGTTCACCTTAGATACTACGAAAGGCACCAA
TCAAACGGAAGCTCCT

Coding sequence (CDS) from alignment at sc0000075:603103..612118-

>TCONS_00007330 ID=TCONS_00007330|Name=TCONS_00007330|organism=Clytia hemisphaerica|type=CDS|length=3375bp|location=Sequence derived from alignment at sc0000075:603103..612118- (Clytia hemisphaerica)
TTATGAATGCAGTATGTTTTAACATGCACCGTTCCGTTGCTGTACCAAAT
TGGCTTCATCATATTATTTTCAATCGAATACTACCTCTGACTGTCTTCAA
ATCATGTTTAAACAGTATTCGAAAATCTGGAAACTGTAGTAAATACGCGT
GTTGCGAGGGTGTGTTTGCTGCCTCGATACGTCGTAAACAGAGCTCTACA
ACTCGATATTTTGAAGAAATGGACAGGTTAGAGGAACTGAAAAAATACGC
AGCGAAATTCACTCCTGCGCATGCGTATGAGGCGAATACAGTTTTAGATA
CGAATTCCCTTGATGAAGAGTTTGTTGAAACGTATGAATTCATTCAAATG
TATTTTCCAAAGCCACTATCCAATGATGAGGCGGTTGGTGGAAATGATGG
TAACCCGCCCACTGACGCCCCTTCCTTCAAGTCTCAAAACGAAAGGGATA
AAGAGAATGTAGAAACACTTCTTGAAAATGTTTACGGTGAAGAGGAGTCT
GAATATATCTTAGATTTTTGGAGATGTGTTGCACAAACTACAGACCGTGT
TTGCTTGATCTTTGTCTCCGTTTTATACGCTTCTATTTCTATAGGACTTA
TGTATCAAGTACCGAGTGTCAGCTTTACTTGATTGCTGTCCCCACCCTCT
GACAGACATCACATTCACAATCGTTCTTAAGCGGAAAGCCGGTTTTCACA
TGTTTAATGTTATCGTTCCATCACTCGTCCTAACATTCTACGCTTTGTTC
ATATTCGCATTCCCCGAAGAGACTGGGGAAAGAATGGGATTGGCTATGGA
TTGCTTTTTAACCATTTCTATTCTTATGATGATGGTCTCGGATATGATGC
CGATTGATTCCAATGTTACACCGCTATTGGGTGCTTTTATGTTGGTCAGT
ATGCTGTCAATCACTTTCTCAATTTANTGCTGGATGTTCAATCGATATTC
GATTTTTCCCTTTCGATTACCAGAAATGTCCGTTACAATTTGGTTCGTGG
TCTTATTCGAGTCCTGAGTTGGATTTGGAGTTGACAAGAAATGATATTGA
CTTGAGTTTTTATCAAGAAAGTTCACAATTTTGGTTGATTCGAACGGAAG
CTGTTCGGAATAGTGTCAAATACAGTTATGAATGCAGTATGTTTTAACAT
GCACCGTTCCGTTGCTGTACCAAATTGGCTTCATCATATTATTTTCAATC
GAATACTACCTCTGACTGTCTTCAAATCATGTTTAAACAGTATTCGAAAA
TCTGGAAACTGTAGTAAATACGCGTGTTGCGAGGGTGTGTTTGCTGCCTC
GATACGTCGTAAACAGAGCTCTACAACTCGATATTTTGAAGAAATGGACA
GGTTAGAGGAACTGAAAAAATACGCAGCGAAATTCACTCCTGCGCATGCG
TATGAGGCGAATACAGTTTTAGATACGAATTCCCTTGATGAAGAGTTTGT
TGAAACGTATGAATTCATTCAAATGTATTTTCCAAAGCCACTATCCAATG
ATGAGGCGGTTGGTGGAAATGATGGTAACCCGCCCACTGACGCCCCTTCC
TTCAAGTCTCAAAACGAAAGGGATAAAGAGAATGTAGAAACACTTCTTGA
AAATGTTTACGGTGAAGAGGAGTCTGAATATATCTTAGATTTTTGGAGAT
GTGTTGCACAAACTACAGACCGTGTTTGCTTGATCTTTGTCTCCGTTTTA
TACGCTTCTATTTCTATAGGACTTATGTATCAAGTACCGAGTGTCAGCTT
TACTTGATTGCTGTCCCCACCCTCTGACAGACATCACATTCACAATCGTT
CTTAAGCGGAAAGCCGGTTTTCACATGTTTAATGTTATCGTTCCATCACT
CGTCCTAACATTCTACGCTTTGTTCATATTCGCATTCCCCGAAGAGACTG
GGGAAAGAATGGGATTGGCTATGGATTGCTTTTTAACCATTTCTATTCTT
ATGATGATGGTCTCGGATATGATGCCGATTGATTCCAATGTTACACCGCT
ATTGGGTGCTTTTATGTTGGTCAGTATGCTGTCAATCACTTTCTCAATTT
ANTGCTGGATGTTCAATCGATATTCGATTTTTCCCTTTCGATTACCAGAA
ATGTCCGTTACAATTTGGTTCGTGGTCTTATTCGAGTCCTGAGTTGGATT
TGGAGTTGACAAGAAATGATATTGACTTGAGTTTTTATCAAGAAAGTTCA
CAATTTTGGTTGATTCGAACGGAAGCTGTTCGGAATAGTGTCAAATACAG
TTATGAATGCAGTATGTTTTAACATGCACCGTTCCGTTGCTGTACCAAAT
TGGCTTCATCATATTATTTTCAATCGAATACTACCTCTGACTGTCTTCAA
ATCATGTTTAAACAGTATTCGAAAATCTGGAAACTGTAGTAAATACGCGT
GTTGCGAGGGTGTGTTTGCTGCCTCGATACGTCGTAAACAGAGCTCTACA
ACTCGATATTTTGAAGAAATGGACAGGTTAGAGGAACTGAAAAAATACGC
AGCGAAATTCACTCCTGCGCATGCGTATGAGGCGAATACAGTTTTAGATA
CGAATTCCCTTGATGAAGAGTTTGTTGAAACGTATGAATTCATTCAAATG
TATTTTCCAAAGCCACTATCCAATGATGAGGCGGTTGGTGGAAATGATGG
TAACCCGCCCACTGACGCCCCTTCCTTCAAGTCTCAAAACGAAAGGGATA
AAGAGAATGTAGAAACACTTCTTGAAAATGTTTACGGTGAAGAGGAGTCT
GAATATATCTTAGATTTTTGGAGATGTGTTGCACAAACTACAGACCGTGT
TTGCTTGATCTTTGTCTCCGTTTTATACGCTTCTATTTCTATAGGACTTA
TGTATCAAGTACCGAGTGTCAGCTTTACTTGATTGCTGTCCCCACCCTCT
GACAGACATCACATTCACAATCGTTCTTAAGCGGAAAGCCGGTTTTCACA
TGTTTAATGTTATCGTTCCATCACTCGTCCTAACATTCTACGCTTTGTTC
ATATTCGCATTCCCCGAAGAGACTGGGGAAAGAATGGGATTGGCTATGGA
TTGCTTTTTAACCATTTCTATTCTTATGATGATGGTCTCGGATATGATGC
CGATTGATTCCAATGTTACACCGCTATTGGGTGCTTTTATGTTGGTCAGT
ATGCTGTCAATCACTTTCTCAATTTANTGCTGGATGTTCAATCGATATTC
GATTTTTCCCTTTCGATTACCAGAAATGTCCGTTACAATTTGGTTCGTGG
TCTTATTCGAGTCCTGAGTTGGATTTGGAGTTGACAAGAAATGATATTGA
CTTGAGTTTTTATCAAGAAAGTTCACAATTTTGGTTGATTCGAACGGAAG
CTGTTCGGAATAGTGTCAAATACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004109XLOC_004109Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007330-proteinTCONS_00007330-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007330-exon-sc0000075-1575043694:611918..612118TCONS_00007330-exon-sc0000075-1575043694:611918..612118Clytia hemisphaericaexon
TCONS_00007330-exon-sc0000075-1575043694:606055..606347TCONS_00007330-exon-sc0000075-1575043694:606055..606347Clytia hemisphaericaexon
TCONS_00007330-exon-sc0000075-1575043694:603103..605293TCONS_00007330-exon-sc0000075-1575043694:603103..605293Clytia hemisphaericaexon
TCONS_00007330-exon-sc0000075-1510915933:611918..612118TCONS_00007330-exon-sc0000075-1510915933:611918..612118Clytia hemisphaericaexon
TCONS_00007330-exon-sc0000075-1510915933:606055..606347TCONS_00007330-exon-sc0000075-1510915933:606055..606347Clytia hemisphaericaexon
TCONS_00007330-exon-sc0000075-1510915933:603103..605293TCONS_00007330-exon-sc0000075-1510915933:603103..605293Clytia hemisphaericaexon
TCONS_00007330-exon-sc0000075-1491911889:611918..612118TCONS_00007330-exon-sc0000075-1491911889:611918..612118Clytia hemisphaericaexon
TCONS_00007330-exon-sc0000075-1491911889:606055..606347TCONS_00007330-exon-sc0000075-1491911889:606055..606347Clytia hemisphaericaexon
TCONS_00007330-exon-sc0000075-1491911889:603103..605293TCONS_00007330-exon-sc0000075-1491911889:603103..605293Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075supercontigsc0000075:603103..612118 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0716433	0.125754	0.113565	0.0158723	0.251199	0.305386	0.73687	0.862311	1.26782	0.852503	0.754876	0.849309	0.933895	0.870894	1.17162	0.925537	2.39869	2.55781	0.258938	0.860698	3.87905	3.62871	1.77433	2.33006	1.43072	2.51257	28.3905	17.3408	8.23811	6.88642
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006029Neurotrans-gated_channel_TM
IPR006202Neur_chan_lig-bd
IPR018000Neurotransmitter_ion_chnl_CS
Vocabulary: Biological Process
TermDefinition
GO:0006811ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005230extracellular ligand-gated ion channel activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005230 extracellular ligand-gated ion channel activity
Blast
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BLAST of TCONS_00007330 vs. Swiss-Prot (Human)
Match: ACHA3 (Neuronal acetylcholine receptor subunit alpha-3 OS=Homo sapiens GN=CHRNA3 PE=1 SV=4)

HSP 1 Score: 151.754 bits (382), Expect = 1.296e-38
Identity = 93/383 (24.28%), Postives = 185/383 (48.30%), Query Frame = 2 
Query:    5 AGCSIDIRFFPFDYQKCPLQFGSWSYSSPELDLELTRNDIDLSFYQESSQFWLIRTEAVRNSVKYSCCPHPLTDITFTIVLKRKAGFHMFNVIVPSLVLTFYALFIFAFPEETGERMGLAMDCFLTISILMMMVSDMMPIDSNVTPLLGAFMLVSMLSITFSIFMNAVCFNMHRSV----AVPNWLHHIIFNRILPLTVFKSCLNSIRKSGNCSKYACCEGVFAASIRRKQSSTTRYFEE------------MDRLEELKKYAAKFTPAHAYEA-NTVLDTNSLDEEFVETYEFIQMYFPKPLSNDEAVGGNDGNPPTDAPSFKSQNERDKENVETLLENVYGEEESEYILDFWRCVAQTTDRVCLIFVSVLYASISIGLMYQ 1102
            + C ID+ +FPFDYQ C ++FGSWSY   ++DL L  + ++L  Y ES ++ +I+    ++ +KY+CC     DIT+++ ++R   F+  N+I+P L+++F  + +F  P + GE++ L +   L++++ ++++++ +P  S V PL+G ++L +M+ +T SI +     N+H        +P+W+  +  N +LP  +F +   S    GN  K     G   +++     + ++  +E              R  ++  ++A  T + + E+ + VL  ++L  E  E                                         ++V+ + EN+  + E++ I D W+ VA   DR+ L   +++    + GL  Q
Sbjct:  157 SSCKIDVTYFPFDYQNCTMKFGSWSYDKAKIDLVLIGSSMNLKDYWESGEWAIIKAPGYKHDIKYNCCEEIYPDITYSLYIRRLPLFYTINLIIPCLLISFLTVLVFYLPSDCGEKVTLCISVLLSLTVFLLVITETIPSTSLVIPLIGEYLLFTMIFVTLSIVITVFVLNVHYRTPTTHTMPSWVKTVFLN-LLPRVMFMTRPTS--NEGNAQKPRPLYGAELSNLNCFSRAESKGCKEGYPCQDGMCGYCHHRRIKISNFSANLTRSSSSESVDAVLSLSALSPEIKEAI---------------------------------------QSVKYIAENMKAQNEAKEIQDDWKYVAMVIDRIFLWVFTLVCILGTAGLFLQ 497
The following BLAST results are available for this feature:
BLAST of TCONS_00007330 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACHA31.296e-3824.28Neuronal acetylcholine receptor subunit alpha-3 OS... [more]
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