TCONS_00073849 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073849
Unique NameTCONS_00073849
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length534

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073849 ID=TCONS_00073849|Name=TCONS_00073849|organism=Clytia hemisphaerica|type=transcript|length=534bp
ccaagtgcttgatccaatgcattttgaaatataatatctatttttaaaag
aaaaacttcaaggtaaaagagaactttcattcataacaggttaacaactg
aaaagtggaactataaatgaaaatctcaattaattttgctcttCTCCTCT
AACTCTAAACCATAGTAACTTCCCACACCCTAAACTCCCGACTCCCATAC
CCACAGAAGAAAAGACACAGTGCTTTCTTTATAATTTGGTGGACGGGTCT
TTGCAAGCACTGAGGATACTCTGGACAGTGGATAAATACAAGAAGTTTAT
TCGTTGAGTACTGTATAATAAATTCTTGGCTCGAGTGTCATTGTTGTAAA
TTTGAACGTGGTAATATTTCGTAGAAAGTAGTGATTGCGAACCGGCCGGA
TGCGCCACAAACCCCTTCGTGAGAGGAAAATACATATTCCTCGTCCCAAT
GCACGGTCGCGTCCTCGAGGGTTAAGGCACTACTCTTGAGTCTCTCGCAA
ATACGATCTCTCATTAAATCGTTCATAATTACNN
Run BLAST on NCBI

transcript from alignment at scaffold_98:271185..271718

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073849 ID=TCONS_00073849|Name=TCONS_00073849|organism=Clytia hemisphaerica|type=transcript|length=534bp|location=Sequence derived from alignment at scaffold_98:271185..271718 (Clytia hemisphaerica)
NNGTAATTATGAACGATTTAATGAGAGATCGTATTTGCGAGAGACTCAAG
AGTAGTGCCTTAACCCTCGAGGACGCGACCGTGCATTGGGACGAGGAATA
TGTATTTTCCTCTCACGAAGGGGTTTGTGGCGCATCCGGCCGGTTCGCAA
TCACTACTTTCTACGAAATATTACCACGTTCAAATTTACAACAATGACAC
TCGAGCCAAGAATTTATTATACAGTACTCAACGAATAAACTTCTTGTATT
TATCCACTGTCCAGAGTATCCTCAGTGCTTGCAAAGACCCGTCCACCAAA
TTATAAAGAAAGCACTGTGTCTTTTCTTCTGTGGGTATGGGAGTCGGGAG
TTTAGGGTGTGGGAAGTTACTATGGTTTAGAGTTAGAGGAGaagagcaaa
attaattgagattttcatttatagttccacttttcagttgttaacctgtt
atgaatgaaagttctcttttaccttgaagtttttcttttaaaaatagata
ttatatttcaaaatgcattggatcaagcacttgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045867XLOC_045867Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073849-exon-scaffold_98-1491911889:271185..271718TCONS_00073849-exon-scaffold_98-1491911889:271185..271718Clytia hemisphaericaexon
TCONS_00073849-exon-scaffold_98-1510915933:271185..271718TCONS_00073849-exon-scaffold_98-1510915933:271185..271718Clytia hemisphaericaexon
TCONS_00073849-exon-scaffold_98-1575043694:271185..271718TCONS_00073849-exon-scaffold_98-1575043694:271185..271718Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_98supercontigscaffold_98:271185..271718 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.9831	13.1761	5.33572	5.43297	17.8142	12.5078	30.8314	26.4865	53.5168	44.9902	39.7177	54.5157	55.3253	66.2166	32.0416	28.206	48.0333	51.8359	29.5623	22.4858	39.2026	37.3777	27.2317	22.9222	34.2901	34.0967	28.2892	22.8636	18.0711	18.0087
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073849 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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