TCONS_00073802 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073802
Unique NameTCONS_00073802
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length987

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073802 ID=TCONS_00073802|Name=TCONS_00073802|organism=Clytia hemisphaerica|type=transcript|length=987bp
NNTCCGCTCTGGAGATCAGCATATTATTGGCCCTTGATAACTAAAAAGGA
GGGGACTTTCGAGAGTTTTGTGTCAGGATATCTAATTTTGCAACCATATT
TTCTATCAAATTGTAGTTCATTATTTAAAGGATTCACAAATTTCAATTCG
ATTGCTTTGTATCTAGATTTTTCATCTCTAGAGAAGACAtccaaataatt
tcattttcaaatgatgctagaatgatttttttctattgcCATATGTGACC
AATTTTATGTTAATGATGGGATTGAGactaaaaatttgccatttaTCTTT
CCCTGTACCAGCAGTGGCTGGGTAGTACAGAATGGNTTCATTTTCAAATG
ATGCTagaatgattttttcctactgcCATATGTGACCAATTTTATGTTAA
TGATGGGATTGAGactaaaaatttgccatttaTCTTTCCCTGTACCAGCA
GTGGCTGGGTAGTACAGAATGGATTTGGATTTTATCTGTACCAGTAGTGG
CTGGGTAGTACAgatggtagtaactgttttctcATGTACCAGGAGTGACT
GGGTAGTACATGGTTTAAATCTACTGTTCCTGTACCAGCTGTGGCTGGGT
AGTACAGggctaaattttgtttttcctttacCAGTAGTGGCTGGGTAGTA
CAGGTGCATTGATTAGTATGCTAGAGAAAAGTCAAGtgagattttatttt
gattgctTGTAGGCACAGAAGAACAAATGTCTGAAAGAGAGATTGATTTG
CACGGGCGTTGGAAATCGGAAAAATCACGAAATAAATACTTAAAGGACAG
TTTGAAGAGAAGACTTAAAATTACCCGTTCTTTGGGAATTTAGACTCAAT
TTCATATCAACTGTACAATCCTTTGCTCTTTGTATTCTCAGTGCTTGCAA
AGACCCGTCCACcaaattataaagaaaacacTGTGTCTTTTCTTCTGTGG
GTATGGGAGTCGGGAGTTTAGGGTGTGGGAAGTTANN
Run BLAST on NCBI

transcript from alignment at scaffold_98:268268..270142+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073802 ID=TCONS_00073802|Name=TCONS_00073802|organism=Clytia hemisphaerica|type=transcript|length=1875bp|location=Sequence derived from alignment at scaffold_98:268268..270142+ (Clytia hemisphaerica)
NNTCCGCTCTGGAGATCAGCATATTATTGGCCCTTGATAACTAAAAAGGA
GGGGACTTTCGAGAGTTTTGTGTCAGGATATCTAATTTTGCAACCATATT
TTCTATCAAATTGTAGTTCATTATTTAAAGGATTCACAAATTTCAATTCG
ATTGCTTTGTATCTAGATTTTTCATCTCTAGAGAAGACAtccaaataatt
tcattttcaaatgatgctagaatgatttttttctattgcCATATGTGACC
AATTTTATGTTAATGATGGGATTGAGactaaaaatttgccatttaTCTTT
CCCTGTACCAGCAGTGGCTGGGTAGTACAGAATGGNTTCATTTTCAAATG
ATGCTagaatgattttttcctactgcCATATGTGACCAATTTTATGTTAA
TGATGGGATTGAGactaaaaatttgccatttaTCTTTCCCTGTACCAGCA
GTGGCTGGGTAGTACAGAATGGATTTGGATTTTATCTGTACCAGTAGTGG
CTGGGTAGTACAgatggtagtaactgttttctcATGTACCAGGAGTGACT
GGGTAGTACATGGTTTAAATCTACTGTTCCTGTACCAGCTGTGGCTGGGT
AGTACAGggctaaattttgtttttcctttacCAGTAGTGGCTGGGTAGTA
CAGGTGCATTGATTAGTATGCTAGAGAAAAGTCAAGtgagattttatttt
gattgctTGTAGGCACAGAAGAACAAAGTCTGGAGGAGAGATTGGAAACT
ATCCAAAATAAAGAGCTCCGTGAGAAAGGAAATAACTTGTATGAATTAAT
CGATGCCAACTGGGCAAGGAGCACAGCTAGAAAGTATTCTTATGGATGGA
ACGCGTGGGTAAAATGGAGTGACCAATATGATGAAGTTTTAGCCATACCT
GCAGATCCTTTTCACATTTGTTTGTATTTGAACGATCTatcaaaagagaa
aaaacagCCAGGCACAATAACTAACGCCTTAACAGGAATACGGTGGGGTC
ACTTGAGAAAAGGGTACCAGTCTCCTACAGATGATTGTCTTGTACAGTTA
ACTTTTAAAGGTGCATTACGTATAGCTTCAGAGCATAAAGTGTCAAATCA
AAAAGAGCCATTACCACCTGAATTAGTAAAAAAGGTCTGTGAAGAGTATG
GGCACAGTGACAACCTTATGCATAAACGTTTTTTGTTAACAGTTTTAATC
GGCTACTTCGGTTTTCTTCGCATAGACGAAATCTTAGGGTTACAAGttaa
acattttgttttcagCACAGATCACATTGACATTAtgttagaaaaatcaa
aaactgatCAAAACAGACATGGTAATAAAGTTACTATTTCAGACATAGAC
AGCAATTGTTCGGTCAAAGAAGTTCTTGATGATTACCTCACAAAGGCTAA
ACTGAAAGACGATTCAGAAGCATACATCTTATGTAAAATGGTCAAGACGA
AGGAAGGACATAAGGCAATAGGACATCATAAAATCAGTTATACCACGGCA
AGGAAAGAGTTCCTTAGTTTGTTAAGTTCAGTCATGCCAATAACAGAAGA
TGTTAGGCAATTTTGTACACATTCCATGAGGTCAGGTGGAGCTACAGCAG
CGATTAATAACGGAGTGTCTGAAAGAGAGATTGATTTGCACGGGCGTTGG
AAATCGGAAAAATCACGAAATAAATACTTAAAGGACAGTTTGAAGAGAAG
ACTTAAAATTACCCGTTCTTTGGGAATTTAGACTCAATTTCATATCAACT
GTACAATCCTTTGCTCTTTGTATTCTCAGTGCTTGCAAAGACCCGTCCAC
caaattataaagaaaacacTGTGTCTTTTCTTCTGTGGGTATGGGAGTCG
GGAGTTTAGGGTGTGGGAAGTTANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045840XLOC_045840Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073802-exon-scaffold_98-1491911889:268268..268994TCONS_00073802-exon-scaffold_98-1491911889:268268..268994Clytia hemisphaericaexon
TCONS_00073802-exon-scaffold_98-1510915933:268268..268994TCONS_00073802-exon-scaffold_98-1510915933:268268..268994Clytia hemisphaericaexon
TCONS_00073802-exon-scaffold_98-1575043694:268268..268994TCONS_00073802-exon-scaffold_98-1575043694:268268..268994Clytia hemisphaericaexon
TCONS_00073802-exon-scaffold_98-1491911889:269883..270142TCONS_00073802-exon-scaffold_98-1491911889:269883..270142Clytia hemisphaericaexon
TCONS_00073802-exon-scaffold_98-1510915933:269883..270142TCONS_00073802-exon-scaffold_98-1510915933:269883..270142Clytia hemisphaericaexon
TCONS_00073802-exon-scaffold_98-1575043694:269883..270142TCONS_00073802-exon-scaffold_98-1575043694:269883..270142Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_98supercontigscaffold_98:268268..270142 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
40.8852	39.0712	16.5824	8.5255	49.7939	32.9957	90.2345	85.7182	172.087	140.934	122.252	169.871	157.336	143.889	87.2814	73.5331	111.022	130.864	65.1961	57.413	147.513	156.105	73.8084	81.7205	113.649	120.139	104.237	98.06	48.0736	41.3004
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073802 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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