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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073802 ID=TCONS_00073802|Name=TCONS_00073802|organism=Clytia hemisphaerica|type=transcript|length=987bp
NNTCCGCTCTGGAGATCAGCATATTATTGGCCCTTGATAACTAAAAAGGA
GGGGACTTTCGAGAGTTTTGTGTCAGGATATCTAATTTTGCAACCATATT
TTCTATCAAATTGTAGTTCATTATTTAAAGGATTCACAAATTTCAATTCG
ATTGCTTTGTATCTAGATTTTTCATCTCTAGAGAAGACAtccaaataatt
tcattttcaaatgatgctagaatgatttttttctattgcCATATGTGACC
AATTTTATGTTAATGATGGGATTGAGactaaaaatttgccatttaTCTTT
CCCTGTACCAGCAGTGGCTGGGTAGTACAGAATGGNTTCATTTTCAAATG
ATGCTagaatgattttttcctactgcCATATGTGACCAATTTTATGTTAA
TGATGGGATTGAGactaaaaatttgccatttaTCTTTCCCTGTACCAGCA
GTGGCTGGGTAGTACAGAATGGATTTGGATTTTATCTGTACCAGTAGTGG
CTGGGTAGTACAgatggtagtaactgttttctcATGTACCAGGAGTGACT
GGGTAGTACATGGTTTAAATCTACTGTTCCTGTACCAGCTGTGGCTGGGT
AGTACAGggctaaattttgtttttcctttacCAGTAGTGGCTGGGTAGTA
CAGGTGCATTGATTAGTATGCTAGAGAAAAGTCAAGtgagattttatttt
gattgctTGTAGGCACAGAAGAACAAATGTCTGAAAGAGAGATTGATTTG
CACGGGCGTTGGAAATCGGAAAAATCACGAAATAAATACTTAAAGGACAG
TTTGAAGAGAAGACTTAAAATTACCCGTTCTTTGGGAATTTAGACTCAAT
TTCATATCAACTGTACAATCCTTTGCTCTTTGTATTCTCAGTGCTTGCAA
AGACCCGTCCACcaaattataaagaaaacacTGTGTCTTTTCTTCTGTGG
GTATGGGAGTCGGGAGTTTAGGGTGTGGGAAGTTANN Run BLAST on NCBI transcript from alignment at scaffold_98:268268..270142+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073802 ID=TCONS_00073802|Name=TCONS_00073802|organism=Clytia hemisphaerica|type=transcript|length=1875bp|location=Sequence derived from alignment at scaffold_98:268268..270142+ (Clytia hemisphaerica)
NNTCCGCTCTGGAGATCAGCATATTATTGGCCCTTGATAACTAAAAAGGA
GGGGACTTTCGAGAGTTTTGTGTCAGGATATCTAATTTTGCAACCATATT
TTCTATCAAATTGTAGTTCATTATTTAAAGGATTCACAAATTTCAATTCG
ATTGCTTTGTATCTAGATTTTTCATCTCTAGAGAAGACAtccaaataatt
tcattttcaaatgatgctagaatgatttttttctattgcCATATGTGACC
AATTTTATGTTAATGATGGGATTGAGactaaaaatttgccatttaTCTTT
CCCTGTACCAGCAGTGGCTGGGTAGTACAGAATGGNTTCATTTTCAAATG
ATGCTagaatgattttttcctactgcCATATGTGACCAATTTTATGTTAA
TGATGGGATTGAGactaaaaatttgccatttaTCTTTCCCTGTACCAGCA
GTGGCTGGGTAGTACAGAATGGATTTGGATTTTATCTGTACCAGTAGTGG
CTGGGTAGTACAgatggtagtaactgttttctcATGTACCAGGAGTGACT
GGGTAGTACATGGTTTAAATCTACTGTTCCTGTACCAGCTGTGGCTGGGT
AGTACAGggctaaattttgtttttcctttacCAGTAGTGGCTGGGTAGTA
CAGGTGCATTGATTAGTATGCTAGAGAAAAGTCAAGtgagattttatttt
gattgctTGTAGGCACAGAAGAACAAAGTCTGGAGGAGAGATTGGAAACT
ATCCAAAATAAAGAGCTCCGTGAGAAAGGAAATAACTTGTATGAATTAAT
CGATGCCAACTGGGCAAGGAGCACAGCTAGAAAGTATTCTTATGGATGGA
ACGCGTGGGTAAAATGGAGTGACCAATATGATGAAGTTTTAGCCATACCT
GCAGATCCTTTTCACATTTGTTTGTATTTGAACGATCTatcaaaagagaa
aaaacagCCAGGCACAATAACTAACGCCTTAACAGGAATACGGTGGGGTC
ACTTGAGAAAAGGGTACCAGTCTCCTACAGATGATTGTCTTGTACAGTTA
ACTTTTAAAGGTGCATTACGTATAGCTTCAGAGCATAAAGTGTCAAATCA
AAAAGAGCCATTACCACCTGAATTAGTAAAAAAGGTCTGTGAAGAGTATG
GGCACAGTGACAACCTTATGCATAAACGTTTTTTGTTAACAGTTTTAATC
GGCTACTTCGGTTTTCTTCGCATAGACGAAATCTTAGGGTTACAAGttaa
acattttgttttcagCACAGATCACATTGACATTAtgttagaaaaatcaa
aaactgatCAAAACAGACATGGTAATAAAGTTACTATTTCAGACATAGAC
AGCAATTGTTCGGTCAAAGAAGTTCTTGATGATTACCTCACAAAGGCTAA
ACTGAAAGACGATTCAGAAGCATACATCTTATGTAAAATGGTCAAGACGA
AGGAAGGACATAAGGCAATAGGACATCATAAAATCAGTTATACCACGGCA
AGGAAAGAGTTCCTTAGTTTGTTAAGTTCAGTCATGCCAATAACAGAAGA
TGTTAGGCAATTTTGTACACATTCCATGAGGTCAGGTGGAGCTACAGCAG
CGATTAATAACGGAGTGTCTGAAAGAGAGATTGATTTGCACGGGCGTTGG
AAATCGGAAAAATCACGAAATAAATACTTAAAGGACAGTTTGAAGAGAAG
ACTTAAAATTACCCGTTCTTTGGGAATTTAGACTCAATTTCATATCAACT
GTACAATCCTTTGCTCTTTGTATTCTCAGTGCTTGCAAAGACCCGTCCAC
caaattataaagaaaacacTGTGTCTTTTCTTCTGTGGGTATGGGAGTCG
GGAGTTTAGGGTGTGGGAAGTTANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073802-exon-scaffold_98-1491911889:268268..268994 | TCONS_00073802-exon-scaffold_98-1491911889:268268..268994 | Clytia hemisphaerica | exon |
| TCONS_00073802-exon-scaffold_98-1510915933:268268..268994 | TCONS_00073802-exon-scaffold_98-1510915933:268268..268994 | Clytia hemisphaerica | exon |
| TCONS_00073802-exon-scaffold_98-1575043694:268268..268994 | TCONS_00073802-exon-scaffold_98-1575043694:268268..268994 | Clytia hemisphaerica | exon |
| TCONS_00073802-exon-scaffold_98-1491911889:269883..270142 | TCONS_00073802-exon-scaffold_98-1491911889:269883..270142 | Clytia hemisphaerica | exon |
| TCONS_00073802-exon-scaffold_98-1510915933:269883..270142 | TCONS_00073802-exon-scaffold_98-1510915933:269883..270142 | Clytia hemisphaerica | exon |
| TCONS_00073802-exon-scaffold_98-1575043694:269883..270142 | TCONS_00073802-exon-scaffold_98-1575043694:269883..270142 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_98 | supercontig | scaffold_98:268268..270142 + |
Blast
The following BLAST results are available for this feature:
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