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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073796 ID=TCONS_00073796|Name=TCONS_00073796|organism=Clytia hemisphaerica|type=transcript|length=2203bp
GTCAAGATATGATGAAGGTTGAAGGAGGAGGTGGTATATTTAACCTTGTT
ATGAATACATTTACATTACATTTATGTAACAGGTGAATGGGACGGTAGTC
CAGTTGGTTCGAGGTGAAGAAGCTCTAGGtttcatcAATATCGTGAAGAA
TGAAAATGTTACATCTTGCCCTGATCATAAATATGCTGACGATCATGCAT
TGTCAGCGAAATTGTTTACACAATGGATGCGAAATGTCCGGTGGGTTAAA
GATGGCGGACATAAACTCCACAATCGAAAAAACGTTGGGTGACaggaact
ttaaagataacgtCTTGTCAACTCTCAGCTGGAATATCGAGCAACCGATA
AcgtcattttctagacaaaaTATGGCGGATATTTGTCACGTGATCAATAA
AGTTGCACCAATGTTTGCTGGCCTACAAAGCACGAGCGAAGAACAACGGA
GAAATCTAAAAGTGTGTTTACACCAGCACTCTATCATCGGCGAGGATTCA
GATAACAATCTCCAAAATGTCATCCTCTTCAAACATAGTCGAAGAATTCT
CATCAAAGATCATGGGAGCTTCAAGGCTAGTAATTATGATGTTGCGCTTA
AGCAGTCTAGTACCTGCACGTGGGCTAGAGTGCAGTTCGCCCACCGAGTA
CGAGGATTTCCAATGTTGAGATTCTCAGGAGCAGATCAACCTAAAGAAAA
CGACGTCGAAAAATTATTCGGTATCCTTTCCTTACTTCTTCCGCAAAACC
GACGACGTAGTCGACGTGACGTCAAATCGCCGTACCGTTGGTCCACATTT
TACGTGGCGGTTATGAAAATACATAATGACGATGACGAAGGAATGCTGAG
AGAGGAATTCAGATCGCTTCTTTCAAATCTAAGAAACAAAGTAATGAAAA
GACGCAGATTTCCTTTAATCTTATTGGTCGATTTAGGAAAAGAAGACAAC
TCATTGGCTTATCAATTGATCAATGAGCAATTTTATTGGATTAAAAATAC
AATGGCCCACTCCATCCTCACTTTTCCCGCCatgacaaaaacaaacaaag
aagacAGATCCAGTGAAACGATGAGTGATTACGTCATGAAAAATCGATTT
CATGGATTGGTTTCAGCTGTTctcactgatgacgtcattaaggGGATTTC
GAATACAAGGCCTGTGTTTGCGGCTATGATGAGATATCGCGAAAATAATT
CAACTTAAAAACTCTGAACAGTCATATTACCGTGGGGTTATGGATTGGAA
AGTTTAATTGGGTGTAAAATAAACGCTCAAAATCAAAACTGGAATAGAAT
ATCCTAACATCACAGGACACAGTTGCTTGTTAATTGCAGGACGTATTGAA
AAATCTTACCCCTTTGCGACTCATATAATGTAAAATATATTGGACGAACA
ATAACTTCTaattaaataaatatttaaatagggtttatgtattttttttc
aataatgttaattaaaattttaaggttaatttcatttttacatCTTCTAA
TCTAATATATATTTCTAAATTCAAATAGTGAAAGCGACAAAATAGGGAGC
TTTATTTGTTCCTGCTTGAATTCTGGTCGAAAGTCTGTATTGAAAAGTGT
CTCTCCTGCCTCGATTACTGATGCAGATTTGATTGGGGCTCGATTTCCCA
GGCTCACATTGCTTGAAGAGACTTCTTCTCCTTGGGTAATTGAGAACAGT
GTCAAATGAACCGATATTACCTGATAGGATAGCGCGCGTTCGTCTCCTCT
CCATCACTTTGAAATAAACATAACGAAGGCAATAATAGGTTTTACTTTGG
ACGTCAGCGCTTTGTGCAATGTCGGAGTTCAGAAACAAGACTTTCTTGAG
GTAGAACTTCTTTGGTCGTCCTCTGTTACTGATTTTTCGATAGGTTTTCT
TTCCGGTGAGGATAGCAAATAGGTTATGCGCTAAGCTTCTCTTTATGAGG
CGTGGGCGGCGACCGTTTGAGGGCTGAGTGACATGGAGTGAGAGTTGCAC
CCAGGAAAGGGATTGACATTTACCATCATCGGGAGGAGTTGCACCAGTAA
TGAGTCCTTTCAAGATAGTGTTGTCATTCCGGTAGAAGATGGgattgaaa
gtttttgaatcaCTTGGAAGACTTGATGAATTGAAAAGACGCAGACAGGT
TTTCTTTAACTCGTCCCATTTCCCTTTGGTCACGTGCTGTAAATTGACAA
CCT Run BLAST on NCBI protein sequence of TCONS_00073796-protein >TCONS_00073796-protein ID=TCONS_00073796-protein|Name=TCONS_00073796-protein|organism=Clytia hemisphaerica|type=polypeptide|length=352bp
MKMLHLALIINMLTIMHCQRNCLHNGCEMSGGLKMADINSTIEKTLGDRN
FKDNVLSTLSWNIEQPITSFSRQNMADICHVINKVAPMFAGLQSTSEEQR
RNLKVCLHQHSIIGEDSDNNLQNVILFKHSRRILIKDHGSFKASNYDVAL
KQSSTCTWARVQFAHRVRGFPMLRFSGADQPKENDVEKLFGILSLLLPQN
RRRSRRDVKSPYRWSTFYVAVMKIHNDDDEGMLREEFRSLLSNLRNKVMK
RRRFPLILLVDLGKEDNSLAYQLINEQFYWIKNTMAHSILTFPAMTKTNK
EDRSSETMSDYVMKNRFHGLVSAVLTDDVIKGISNTRPVFAAMMRYRENN
ST Run BLAST on NCBI transcript from alignment at scaffold_98:179572..183281+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073796 ID=TCONS_00073796|Name=TCONS_00073796|organism=Clytia hemisphaerica|type=transcript|length=3710bp|location=Sequence derived from alignment at scaffold_98:179572..183281+ (Clytia hemisphaerica)
GTCAAGATATGATGAAGGTTGAAGGAGGAGGTGGTATATTTAACCTTGTT
ATGAATACATTTACATTACATTTATGTAACAGGTGAATGGGACGGTAGTC
CAGTTGGTTCGAGGTGAAGAAGCTCTAGGGTAAGTGATTCTATTCATATT
GCTTTGCGTGCTCTAAAACGGCCAAATATTTAGGAAGTTTGCCTGAAGTT
TGCCTGTTTGCCTACATTTTCATGCTTACAACTCAGAAAGCTAGGAACAT
CTAAAGTTCTCAAAGACTTCACAAATCCCGGGgagagggggtactagggc
aaaataggTTACAgggatgcgccgctggtcagggttgtaccttttttaac
ctccgcgagtcccaggtagggttgcaaaaacaccaaaatagaaaaatcag
ccCCTCGCAGGGTGCCTTTTTGAAAGATttagggaaaaagtagaaaattt
tagaaattttttggaatttcagcctcattcagggtcactttttcgcaaat
ttgggcaaaatttttgaaaaaatgagtcccacgtagggGTCCACTTTTCG
AACCTCAGCAGAGCAACCCTGTcggtgtgtgtgtgtgtgttttagagtcc
ataaaggtataatatgttcttaacttgttcataatacagtttgttcttat
taaaacaattattttgactGAGAAATGATTACTCTCGTATAAAAAGTacc
cataattaatttttagtttcatcAATATCGTGAAGAATGAAAATGTTACA
TCTTGCCCTGATCATAAATATGCTGACGATCATGCATTGTCAGCGAAATT
GTTTACACAATGGATGCGAAATGTCCGGTGGGTTAAAGATGGCGGACATA
AACTCCACAATCGAAAAAACGTTGGGTGACaggaactttaaagataacgt
CTTGTCAACTCTCAGCTGGAATATCGAGCAACCGATAAcgtcattttcta
gacaaaaTATGGCGGATATTTGTCACGTGATCAATAAAGTTGCACCAATG
GTAAGTAAAGATTTTGTACAGTCCTTCTTACTTAATAACTACACTCATCT
CATCATATTACAACCGTAGAAAATTACGACACAGTCTCCAAAACAGCATG
TAAATAAGGCTGATGAAAATTTAAGTTTACTCACATACTGACTTTTAAAG
TCGCACCAGGAAAATTTGAAAGAGCGAGGGTCATTAAAGAGTTGAAAAGT
TCTCAAACCAGATTCCACTGAGATAGATGGGGGGGGGCAGCTgagcaaaa
ggaccgacgggtatgtgcgggtcctaagggtaccttttccaatatgttta
aaatgcactgtaaggatcggaaaaactagagatgcactgtaagggtagaa
atttcagaaaattcttgaaaaatctagatattttgaccaaaaatgctaga
attttgaccaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccccccccc
cccgggggctcCCATGGTTTCTACCGTGAGATCTGACTTTTTTAGCGCAC
ATACCAGAATAGAGGAGCAAAAGGAAGAGATGATGTCTCTAAATAgatac
attttcaatttttaacgtAGTTTGCTGGCCTACAAAGCACGAGCGAAGAA
CAACGGAGAAATCTAAAAGTGTGTTTACACCAGCACTCTATCATCGGCGA
GGATTCAGATAACAATCTCCAAAATGTCATCCTCTTCAAACATAGTCGAA
GAATTCTCATCAAAGATCATGGGAGCTTCAAGGCTAGTAATTATGATGTT
GCGCTTAAGCAGTCTAGTACCTGCACGTGGGCTAGAGTGCAGTTCGCCCA
CCGAGTACGAGGATTTCCAATGTTGAGATTCTCAGGAGCAGATCAACCTA
AAGAAAACGACGTCGAAAAATTATTCGGTATCCTTTCCTTACTTCTTCCG
CAAAACCGACGACGTAGTCGACGTGACGTCAAATCGCCGTACCGTTGGTC
CACATTTTACGTGGCGGTTATGAAAATACATAATGACGATGACGAAGGAA
TGCTGAGAGAGGAATTCAGATCGCTTCTTTCAAATCTAAGAAACAAAGTA
ATGAAAAGACGCAGATTTCCTTTAATCTTATTGGTCGATTTAGGAAAAGA
AGACAACTCATTGGCTTATCAATTGATCAATGAGCAATTTTATTGGATTA
AAAATACAATGGCCCACTCCATCCTCACTTTTCCCGCCatgacaaaaaca
aacaaagaagacAGATCCAGTGAAACGATGAGTGATTACGTCATGAAAAA
TCGATTTCATGGATTGGTTTCAGCTGTTctcactgatgacgtcattaagg
GGATTTCGAATACAAGGCCTGTGTTTGCGGCTATGATGAGATATCGCGAA
AATAATTCAACTTAAAAACTCTGAACAGTCATATTACCGTGGGGTTATGG
ATTGGAAAGTTTAATTGGGTGTAAAATAAACGCTCAAAATCAAAACTGGA
ATAGAATATCCTAACATCACAGGACACAGTTGCTTGTTAATTGCAGGACG
TATTGAAAAATCTTACCCCTTTGCGACTCATATAATGTAAAATATATTGG
ACGAACAATAACTTCTaattaaataaatatttaaatagggtttatgtatt
ttttttcaataatgttaattaaaattttaaggttaatttcatttttacat
CTTCTAATCTAATATATATTTCTAAATTCAAATAGTGAAAGCGACAAAAT
AGGGAGCTTTATTTGTTCCTGCTTGAATTCTGGTCGAAAGTCTGTATTGA
AAAGTGTCTCTCCTGCCTCGATTACTGATGCAGATTTGATTGGGGCTCGA
TTTCCCAGGCTCACATTGCTTGAAGAGACTTCTTCTCCTTGGGTAATTGA
GAACAGTGTCAAATGAACCGATATTACCTGATAGGATAGCGCGCGTTCGT
CTCCTCTCCATCACTTTGAAATAAACATAACGAAGGCAATAATAGGTTTT
ACTTTGGACGTCAGCGCTTTGTGCAATGTCGGAGTTCAGAAACAAGACTT
TCTTGAGGTAGAACTTCTTTGGTCGTCCTCTGTTACTGATTTTTCGATAG
GTTTTCTTTCCGGTGAGGATAGCAAATAGGTTATGCGCTAAGCTTCTCTT
TATGAGGCGTGGGCGGCGACCGTTTGAGGGCTGAGTGACATGGAGTGAGA
GTTGCACCCAGGAAAGGGATTGACATTTACCATCATCGGGAGGAGTTGCA
CCAGTAATGAGTCCTTTCAAGATAGTGTTGTCATTCCGGTAGAAGATGGg
attgaaagtttttgaatcaCTTGGAAGACTTGATGAATTGAAAAGACGCA
GACAGGTTTTCTTTAACTCGTCCCATTTCCCTTTGGTCACGTGCTGTAAA
TTGACAACCT Coding sequence (CDS) from alignment at scaffold_98:179572..183281+ >TCONS_00073796 ID=TCONS_00073796|Name=TCONS_00073796|organism=Clytia hemisphaerica|type=CDS|length=2118bp|location=Sequence derived from alignment at scaffold_98:179572..183281+ (Clytia hemisphaerica)
ATGAAAATGTTACATCTTGCCCTGATCATAAATATGCTGACGATCATGCA
TTGTCAGCGAAATTGTTTACACAATGGATGCGAAATGTCCGGTGGGTTAA
AGATGGCGGACATAAACTCCACAATCGAAAAAACGTTGGGTGACaggaac
tttaaagataacgtCTTGTCAACTCTCAGCTGGAATATCGAGCAACCGAT
AAcgtcattttctagacaaaaTATGGCGGATATTTGTCACGTGATCAATA
AAGTTGCACCAATGTTTGCTGGCCTACAAAGCACGAGCGAAGAACAACGG
AGAAATCTAAAAGTGTGTTTACACCAGCACTCTATCATCGGCGAGGATTC
AGATAACAATCTCCAAAATGTCATCCTCTTCAAACATAGTCGAAGAATTC
TCATCAAAGATCATGGGAGCTTCAAGGCTAGTAATTATGATGTTGCGCTT
AAGCAGTCTAGTACCTGCACGTGGGCTAGAGTGCAGTTCGCCCACCGAGT
ACGAGGATTTCCAATGTTGAGATTCTCAGGAGCAGATCAACCTAAAGAAA
ACGACGTCGAAAAATTATTCGGTATCCTTTCCTTACTTCTTCCGCAAAAC
CGACGACGTAGTCGACGTGACGTCAAATCGCCGTACCGTTGGTCCACATT
TTACGTGGCGGTTATGAAAATACATAATGACGATGACGAAGGAATGCTGA
GAGAGGAATTCAGATCGCTTCTTTCAAATCTAAGAAACAAAGTAATGAAA
AGACGCAGATTTCCTTTAATCTTATTGGTCGATTTAGGAAAAGAAGACAA
CTCATTGGCTTATCAATTGATCAATGAGCAATTTTATTGGATTAAAAATA
CAATGGCCCACTCCATCCTCACTTTTCCCGCCatgacaaaaacaaacaaa
gaagacAGATCCAGTGAAACGATGAGTGATTACGTCATGAAAAATCGATT
TCATGGATTGGTTTCAGCTGTTctcactgatgacgtcattaaggGGATTT
CGAATACAAGGCCTGTGTTTGCGGCTATGATGAGATATCGCGAAAATAAT
TCAACTTAAATGAAAATGTTACATCTTGCCCTGATCATAAATATGCTGAC
GATCATGCATTGTCAGCGAAATTGTTTACACAATGGATGCGAAATGTCCG
GTGGGTTAAAGATGGCGGACATAAACTCCACAATCGAAAAAACGTTGGGT
GACaggaactttaaagataacgtCTTGTCAACTCTCAGCTGGAATATCGA
GCAACCGATAAcgtcattttctagacaaaaTATGGCGGATATTTGTCACG
TGATCAATAAAGTTGCACCAATGTTTGCTGGCCTACAAAGCACGAGCGAA
GAACAACGGAGAAATCTAAAAGTGTGTTTACACCAGCACTCTATCATCGG
CGAGGATTCAGATAACAATCTCCAAAATGTCATCCTCTTCAAACATAGTC
GAAGAATTCTCATCAAAGATCATGGGAGCTTCAAGGCTAGTAATTATGAT
GTTGCGCTTAAGCAGTCTAGTACCTGCACGTGGGCTAGAGTGCAGTTCGC
CCACCGAGTACGAGGATTTCCAATGTTGAGATTCTCAGGAGCAGATCAAC
CTAAAGAAAACGACGTCGAAAAATTATTCGGTATCCTTTCCTTACTTCTT
CCGCAAAACCGACGACGTAGTCGACGTGACGTCAAATCGCCGTACCGTTG
GTCCACATTTTACGTGGCGGTTATGAAAATACATAATGACGATGACGAAG
GAATGCTGAGAGAGGAATTCAGATCGCTTCTTTCAAATCTAAGAAACAAA
GTAATGAAAAGACGCAGATTTCCTTTAATCTTATTGGTCGATTTAGGAAA
AGAAGACAACTCATTGGCTTATCAATTGATCAATGAGCAATTTTATTGGA
TTAAAAATACAATGGCCCACTCCATCCTCACTTTTCCCGCCatgacaaaa
acaaacaaagaagacAGATCCAGTGAAACGATGAGTGATTACGTCATGAA
AAATCGATTTCATGGATTGGTTTCAGCTGTTctcactgatgacgtcatta
aggGGATTTCGAATACAAGGCCTGTGTTTGCGGCTATGATGAGATATCGC
GAAAATAATTCAACTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073796-exon-scaffold_98-1491911889:179572..179700 | TCONS_00073796-exon-scaffold_98-1491911889:179572..179700 | Clytia hemisphaerica | exon |
| TCONS_00073796-exon-scaffold_98-1510915933:179572..179700 | TCONS_00073796-exon-scaffold_98-1510915933:179572..179700 | Clytia hemisphaerica | exon |
| TCONS_00073796-exon-scaffold_98-1575043694:179572..179700 | TCONS_00073796-exon-scaffold_98-1575043694:179572..179700 | Clytia hemisphaerica | exon |
| TCONS_00073796-exon-scaffold_98-1491911889:180288..180571 | TCONS_00073796-exon-scaffold_98-1491911889:180288..180571 | Clytia hemisphaerica | exon |
| TCONS_00073796-exon-scaffold_98-1510915933:180288..180571 | TCONS_00073796-exon-scaffold_98-1510915933:180288..180571 | Clytia hemisphaerica | exon |
| TCONS_00073796-exon-scaffold_98-1575043694:180288..180571 | TCONS_00073796-exon-scaffold_98-1575043694:180288..180571 | Clytia hemisphaerica | exon |
| TCONS_00073796-exon-scaffold_98-1491911889:181492..183281 | TCONS_00073796-exon-scaffold_98-1491911889:181492..183281 | Clytia hemisphaerica | exon |
| TCONS_00073796-exon-scaffold_98-1510915933:181492..183281 | TCONS_00073796-exon-scaffold_98-1510915933:181492..183281 | Clytia hemisphaerica | exon |
| TCONS_00073796-exon-scaffold_98-1575043694:181492..183281 | TCONS_00073796-exon-scaffold_98-1575043694:181492..183281 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_98 | supercontig | scaffold_98:179572..183281 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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