TCONS_00007353 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007353
Unique NameTCONS_00007353
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length945

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007353 ID=TCONS_00007353|Name=TCONS_00007353|organism=Clytia hemisphaerica|type=transcript|length=945bp
TTTGCATGGTACATCTACGCTAATTTATCCTTACTAACATTAACTGTTGA
TCGATCACTATCAATCCGCTGGCCATTTCGGTACGAACGACTAGGCTGGA
AAAGTCACCTAACGTTTCTTATGTTTAGCCCGATTTCGTCGCTCGTCTAT
ATTTTCCGATATGTAGGAGCGCTAGCAGGTAGACGTCAATCAGGATCAAG
AAGCTCGGCTGATAATGCCGGCTCAATGAAGTTCTTTATATTTGGTATGT
CAACACAAATGATCATTCTATTAGTTTCAAACTCGATTGTTTTTACAACC
GTTCGCCGACATAAACGTACCATCAAATCCAATAATGTTAGTTCAAATGA
AAACAGTAGAAATCAGATTACTCGACGACGAGACGTTTTCACATTCTATA
TTTGTTTTGGTTGCGTCATCACTTACGTCATTTTATGGCTACCATCTTTG
ATCATCAAAATCTTACAATTTTACGGACAATATCCTATCGAGCATAAGTA
CTTTGCACTGACTATGGCAGTTGCCAATGTTAACCCAGTTTCGGATGCCG
TACTTTTTGTATTCTTCAATCGTGAATTTAAACTGAAACTCAAATCAGTG
TTACGTTTAATATGAAAGAAACCATTTTAAAACACTGTAATTTAACActt
ctgtgtcacagacccgctaggACCCCCGCCCATTGGGAAATTTGGGCGAA
ATTTCGTCGTTGTTTGAAAAAGATACTCTACAGTTTCAGCcctactggga
aattgactttgttttcgTCCTACTTTTCAATGGAAAAATTATGCACTCCA
aatcatccccactggaatttttcagctttgggatgatataatttctattc
ccattggaATTTCGTTATACAGTTTTATACCCACCGAAGGAAAAAGTTCC
ATtggggctgtgaaacagggcGCGATTGATTTTGATTGGAACTTG
Run BLAST on NCBI

protein sequence of TCONS_00007353-protein

>TCONS_00007353-protein ID=TCONS_00007353-protein|Name=TCONS_00007353-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
FAWYIYANLSLLTLTVDRSLSIRWPFRYERLGWKSHLTFLMFSPISSLVY
IFRYVGALAGRRQSGSRSSADNAGSMKFFIFGMSTQMIILLVSNSIVFTT
VRRHKRTIKSNNVSSNENSRNQITRRRDVFTFYICFGCVITYVILWLPSL
IIKILQFYGQYPIEHKYFALTMAVANVNPVSDAVLFVFFNREFKLKLKSV
LRLI
Run BLAST on NCBI

transcript from alignment at sc0000075:513616..514560

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007353 ID=TCONS_00007353|Name=TCONS_00007353|organism=Clytia hemisphaerica|type=transcript|length=945bp|location=Sequence derived from alignment at sc0000075:513616..514560 (Clytia hemisphaerica)
CAAGTTCCAATCAAAATCAATCGCgccctgtttcacagccccaATGGAAC TTTTTCCTTCGGTGGGTATAAAACTGTATAACGAAATtccaatgggaata gaaattatatcatcccaaagctgaaaaattccagtggggatgattTGGAG TGCATAATTTTTCCATTGAAAAGTAGGAcgaaaacaaagtcaatttccca gtaggGCTGAAACTGTAGAGTATCTTTTTCAAACAACGACGAAATTTCGC CCAAATTTCCCAATGGGCGGGGGTcctagcgggtctgtgacacagaagTG TTAAATTACAGTGTTTTAAAATGGTTTCTTTCATATTAAACGTAACACTG ATTTGAGTTTCAGTTTAAATTCACGATTGAAGAATACAAAAAGTACGGCA TCCGAAACTGGGTTAACATTGGCAACTGCCATAGTCAGTGCAAAGTACTT ATGCTCGATAGGATATTGTCCGTAAAATTGTAAGATTTTGATGATCAAAG ATGGTAGCCATAAAATGACGTAAGTGATGACGCAACCAAAACAAATATAG AATGTGAAAACGTCTCGTCGTCGAGTAATCTGATTTCTACTGTTTTCATT TGAACTAACATTATTGGATTTGATGGTACGTTTATGTCGGCGAACGGTTG TAAAAACAATCGAGTTTGAAACTAATAGAATGATCATTTGTGTTGACATA CCAAATATAAAGAACTTCATTGAGCCGGCATTATCAGCCGAGCTTCTTGA TCCTGATTGACGTCTACCTGCTAGCGCTCCTACATATCGGAAAATATAGA CGAGCGACGAAATCGGGCTAAACATAAGAAACGTTAGGTGACTTTTCCAG CCTAGTCGTTCGTACCGAAATGGCCAGCGGATTGATAGTGATCGATCAAC AGTTAATGTTAGTAAGGATAAATTAGCGTAGATGTACCATGCAAA

Coding sequence (CDS) from alignment at sc0000075:513616..514560

>TCONS_00007353 ID=TCONS_00007353|Name=TCONS_00007353|organism=Clytia hemisphaerica|type=CDS|length=615bp|location=Sequence derived from alignment at sc0000075:513616..514560 (Clytia hemisphaerica)
TCATATTAAACGTAACACTGATTTGAGTTTCAGTTTAAATTCACGATTGA
AGAATACAAAAAGTACGGCATCCGAAACTGGGTTAACATTGGCAACTGCC
ATAGTCAGTGCAAAGTACTTATGCTCGATAGGATATTGTCCGTAAAATTG
TAAGATTTTGATGATCAAAGATGGTAGCCATAAAATGACGTAAGTGATGA
CGCAACCAAAACAAATATAGAATGTGAAAACGTCTCGTCGTCGAGTAATC
TGATTTCTACTGTTTTCATTTGAACTAACATTATTGGATTTGATGGTACG
TTTATGTCGGCGAACGGTTGTAAAAACAATCGAGTTTGAAACTAATAGAA
TGATCATTTGTGTTGACATACCAAATATAAAGAACTTCATTGAGCCGGCA
TTATCAGCCGAGCTTCTTGATCCTGATTGACGTCTACCTGCTAGCGCTCC
TACATATCGGAAAATATAGACGAGCGACGAAATCGGGCTAAACATAAGAA
ACGTTAGGTGACTTTTCCAGCCTAGTCGTTCGTACCGAAATGGCCAGCGG
ATTGATAGTGATCGATCAACAGTTAATGTTAGTAAGGATAAATTAGCGTA
GATGTACCATGCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004132XLOC_004132Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007353-exon-sc0000075-1491911889:513616..514560TCONS_00007353-exon-sc0000075-1491911889:513616..514560Clytia hemisphaericaexon
TCONS_00007353-exon-sc0000075-1510915933:513616..514560TCONS_00007353-exon-sc0000075-1510915933:513616..514560Clytia hemisphaericaexon
TCONS_00007353-exon-sc0000075-1575043694:513616..514560TCONS_00007353-exon-sc0000075-1575043694:513616..514560Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007353-proteinTCONS_00007353-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075supercontigsc0000075:513616..514560 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0.929597 0.754241 0.690542 0.754719 0 1.44465 0.0320586 0.166466 0 0.0293738 0.542792 0.222538 0 0.375343 0.419453 0.34099 0.221077 0.150743 0.103508 0 0.0660965 0.07054 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007353 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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