|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073680 ID=TCONS_00073680|Name=TCONS_00073680|organism=Clytia hemisphaerica|type=transcript|length=1793bpRun BLAST on NCBI transcript from alignment at scaffold_97:871515..887342+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073680 ID=TCONS_00073680|Name=TCONS_00073680|organism=Clytia hemisphaerica|type=transcript|length=15828bp|location=Sequence derived from alignment at scaffold_97:871515..887342+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00073680 vs. Swiss-Prot (Human)
Match: DLG5 (Disks large homolog 5 OS=Homo sapiens GN=DLG5 PE=1 SV=4) HSP 1 Score: 218.394 bits (555), Expect = 1.022e-59 Identity = 135/389 (34.70%), Postives = 210/389 (53.98%), Query Frame = 2
Query: 398 GDQILKYNDKDMGNITLEEAILELGKHTEVSDLQVQYNPPGYRKAQTQANDSFYVRAQFDRFPHGKGELSFRKGDILHVTETFYKGQLGVWRASIVNDNETTKPSSGKLTKGKIPSKRKAEQELLLRRS-SSYGDDKSKN-------RKSLFRRSKKGSSHHAINHSRESS-DSKAEIESTVSGGTSFVFISDDFN-TYQFVKQLECKFPRPVIIVGPMAEPICDKLVIHWSMNFARC-FEVVHSTQDEMSENVDSGTYLDYKLRKGGDRYEVVTANAVKEFSQKQTKHCLLDINMDAIERIINAHLYPIIIYLKFKSGKIIKDMRDGHFIKDKLSTKEAKDLYDTYLKQEKDSKHFFNVTINAVSNLHQVCKDINDAVLEQQKKALWV 1531
GD IL+Y D+ N T+EE +E+ K + L+VQY P + KA+ DSFY+RA +DR + ELSF+K DIL+V +T +G G W A +++N + K+ +G+IPSK +QE R S S DD S R+S FRR K H R S D K + S D + YQ V++++C RPV+I+GP+ + + + LV F RC EV+ ++Q + V ++DYK R G ++V T ++KE ++K +HCLLDI AIER+ + H+YPI+I++ +KS K IK+ RD +++DK++ + +K+ ++ K E++ +F I L +C I V ++Q K LW+
Sbjct: 1544 GDLILEYGSLDVRNKTVEEVYVEMLKPRDGVRLKVQYRPEEFTKAKGLPGDSFYIRALYDRLADVEQELSFKKDDILYVDDTLPQGTFGSWMAWQLDEN------AQKIQRGQIPSKYVMDQEFSRRLSMSEVKDDNSATKTLSAAARRSFFRRKHK--------HKRSGSKDGKDLLALDAFSSDSIPLFEDSVSLAYQRVQKVDCTALRPVLILGPLLDVVKEMLVNEAPGKFCRCPLEVMKASQQAIERGVKDCLFVDYKRRSG--HFDVTTVASIKEITEK-NRHCLLDIAPHAIERLHHMHIYPIVIFIHYKSAKHIKEQRDPIYLRDKVTQRHSKEQFEAAQKLEQEYSRYFTGVIQG-GALSSICTQILAMVNQEQNKVLWI 1914 The following BLAST results are available for this feature:
BLAST of TCONS_00073680 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.