|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073774 ID=TCONS_00073774|Name=TCONS_00073774|organism=Clytia hemisphaerica|type=transcript|length=1605bp
TAAAAAAGTAACACTACGTATAccatttgacaaaaaatggcTGCAGCGAA
TAACAACAGTATGGGGAATAAGGTAAAGGCTATGAAACCGAAAATTATCG
ACCCATCGAAATGCACTCTGGGTAAATCACTACACCAACAAGTTCTTAGA
TACTctagaaaaacattacaacatCAAACGAAACAGTTTAACCTCGGGAA
CGGGCAAATATTCACCGATCCAATAACTGCAGCTGATTATTTACTTCAGA
GAGAATATGGCGATTCTTCTCTCGTTGATAACACAAAACACAAATGTGTA
TTCATTCCTCCAGTGTTTTGTTCAAATCAATATACAAGTAAATCTGCAGT
TCCTCTTTTGGATTACGACTTCGAAACAAGATTTCTGACAACGTTGGCTA
ACTTATCGAATGAATTTCCCAATCATTGGTTCACAGAACAGTTAAAAACT
TTCGTCCAACAACAAGGATTATCAACTGATGATGCTAAAGAAATTGATGC
TGCTGATTTTGACAAGTGGATACTAAACGTTAAAATGTCATATCTCGTTG
CCCAGGAATTGCATGGAAAAGAGGTCAATTTACCACCTTCAACTTCAGAA
ACAATTATCTTCATTAAAGGCTGCCTTGCTGAATTGAATTGTAAGAAACG
AGGAACAGAGCTTGAAGCCACTCTACAAAATTGTCTACAAACTTTAGGGA
ATGTGAACGGGAAAAAGATTCTCAAACGTGGAATAGAGAAACTGATTGAA
CAAAACCCATGCACGGATTCAAActtgttatggttttttgaattGGTGTT
ATCATATCGTGGCGAGGCTTACGAACAAATGTTCTTCGATAAATTATTGT
CTATGAGAGAGGATACTTTATTAAACGATACAGTTATCCTTCAATCGGTT
TGTTTTATAACTGACGTCAACAAAAAGAAACATCAAGAATTTGACCTGAT
CATTTTCTCTTGGCCAAGAAAACTCGTCATTGGTATCGAAATAAAgagac
aactcaatgacaccgcTTTTAACCAAATCGAAAAATATCACACGCTATTC
CAAGAAAGATTAGGTGATCAGTTTGGTGCCGACTGGACATTTTTCCCAGT
GATCTGTGTCGGTGAGAATACCCTGTCTTTCGAAAGTCAACATTACATTA
ACATAAACACTGACATTGAATTATGGTTATCATCGATATTCAAACGATTT
CCAGAAAAAACTGTTCCGATACCATTTTTACCGTCCGCCGAGCATCTCAT
AAAGATTTTGCGTTTGATAATTTTCNTTTTTACCGTCCGCCGAGCATCTC
ATAAAGATTTTGCGTTTGATCATTTTTGCTGTACACATTTCGAAGAAAGA
CCAAATAGCACCAATCACAACAACCAACTGGGTCAAATATATCAGCGATG
CAATCGACACACTTTGTACCAGCCACAATATTTTATTTCACTCAAAAGAA
CAATTACCAGTATTTATTGGAGATCACGCCCAATATACGAAACTTTTGAT
TAAGGGTGGTCCGGGCGCTGGAAAGACACACATACTCAAGCAAAGGGCAA
TAATGTTGAGTAAGGATCCACAATTCAACGGTCGTGTGATGTTCATTGTT
CATGT Run BLAST on NCBI protein sequence of TCONS_00073774-protein >TCONS_00073774-protein ID=TCONS_00073774-protein|Name=TCONS_00073774-protein|organism=Clytia hemisphaerica|type=polypeptide|length=488bp
MAAANNNSMGNKVKAMKPKIIDPSKCTLGKSLHQQVLRYSRKTLQHQTKQ
FNLGNGQIFTDPITAADYLLQREYGDSSLVDNTKHKCVFIPPVFCSNQYT
SKSAVPLLDYDFETRFLTTLANLSNEFPNHWFTEQLKTFVQQQGLSTDDA
KEIDAADFDKWILNVKMSYLVAQELHGKEVNLPPSTSETIIFIKGCLAEL
NCKKRGTELEATLQNCLQTLGNVNGKKILKRGIEKLIEQNPCTDSNLLWF
FELVLSYRGEAYEQMFFDKLLSMREDTLLNDTVILQSVCFITDVNKKKHQ
EFDLIIFSWPRKLVIGIEIKRQLNDTAFNQIEKYHTLFQERLGDQFGADW
TFFPVICVGENTLSFESQHYININTDIELWLSSIFKRFPEKTVPIPFLPS
AEHLIKILRLIIFXFTVRRASHKDFAFDHFCCTHFEERPNSTNHNNQLGQ
IYQRCNRHTLYQPQYFISLKRTITSIYWRSRPIYETFD Run BLAST on NCBI transcript from alignment at scaffold_97:796420..798024 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073774 ID=TCONS_00073774|Name=TCONS_00073774|organism=Clytia hemisphaerica|type=transcript|length=1605bp|location=Sequence derived from alignment at scaffold_97:796420..798024 (Clytia hemisphaerica)
ACATGAACAATGAACATCACACGACCGTTGAATTGTGGATCCTTACTCAA
CATTATTGCCCTTTGCTTGAGTATGTGTGTCTTTCCAGCGCCCGGACCAC
CCTTAATCAAAAGTTTCGTATATTGGGCGTGATCTCCAATAAATACTGGT
AATTGTTCTTTTGAGTGAAATAAAATATTGTGGCTGGTACAAAGTGTGTC
GATTGCATCGCTGATATATTTGACCCAGTTGGTTGTTGTGATTGGTGCTA
TTTGGTCTTTCTTCGAAATGTGTACAGCAAAAATGATCAAACGCAAAATC
TTTATGAGATGCTCGGCGGACGGTAAAAANGAAAATTATCAAACGCAAAA
TCTTTATGAGATGCTCGGCGGACGGTAAAAATGGTATCGGAACAGTTTTT
TCTGGAAATCGTTTGAATATCGATGATAACCATAATTCAATGTCAGTGTT
TATGTTAATGTAATGTTGACTTTCGAAAGACAGGGTATTCTCACCGACAC
AGATCACTGGGAAAAATGTCCAGTCGGCACCAAACTGATCACCTAATCTT
TCTTGGAATAGCGTGTGATATTTTTCGATTTGGTTAAAAgcggtgtcatt
gagttgtctcTTTATTTCGATACCAATGACGAGTTTTCTTGGCCAAGAGA
AAATGATCAGGTCAAATTCTTGATGTTTCTTTTTGTTGACGTCAGTTATA
AAACAAACCGATTGAAGGATAACTGTATCGTTTAATAAAGTATCCTCTCT
CATAGACAATAATTTATCGAAGAACATTTGTTCGTAAGCCTCGCCACGAT
ATGATAACACCaattcaaaaaaccataacaagTTTGAATCCGTGCATGGG
TTTTGTTCAATCAGTTTCTCTATTCCACGTTTGAGAATCTTTTTCCCGTT
CACATTCCCTAAAGTTTGTAGACAATTTTGTAGAGTGGCTTCAAGCTCTG
TTCCTCGTTTCTTACAATTCAATTCAGCAAGGCAGCCTTTAATGAAGATA
ATTGTTTCTGAAGTTGAAGGTGGTAAATTGACCTCTTTTCCATGCAATTC
CTGGGCAACGAGATATGACATTTTAACGTTTAGTATCCACTTGTCAAAAT
CAGCAGCATCAATTTCTTTAGCATCATCAGTTGATAATCCTTGTTGTTGG
ACGAAAGTTTTTAACTGTTCTGTGAACCAATGATTGGGAAATTCATTCGA
TAAGTTAGCCAACGTTGTCAGAAATCTTGTTTCGAAGTCGTAATCCAAAA
GAGGAACTGCAGATTTACTTGTATATTGATTTGAACAAAACACTGGAGGA
ATGAATACACATTTGTGTTTTGTGTTATCAACGAGAGAAGAATCGCCATA
TTCTCTCTGAAGTAAATAATCAGCTGCAGTTATTGGATCGGTGAATATTT
GCCCGTTCCCGAGGTTAAACTGTTTCGTTTGatgttgtaatgtttttcta
gAGTATCTAAGAACTTGTTGGTGTAGTGATTTACCCAGAGTGCATTTCGA
TGGGTCGATAATTTTCGGTTTCATAGCCTTTACCTTATTCCCCATACTGT
TGTTATTCGCTGCAgccattttttgtcaaatggTATACGTAGTGTTACTT
TTTTA Coding sequence (CDS) from alignment at scaffold_97:796420..798024 >TCONS_00073774 ID=TCONS_00073774|Name=TCONS_00073774|organism=Clytia hemisphaerica|type=CDS|length=1467bp|location=Sequence derived from alignment at scaffold_97:796420..798024 (Clytia hemisphaerica)
TTAATCAAAAGTTTCGTATATTGGGCGTGATCTCCAATAAATACTGGTAA
TTGTTCTTTTGAGTGAAATAAAATATTGTGGCTGGTACAAAGTGTGTCGA
TTGCATCGCTGATATATTTGACCCAGTTGGTTGTTGTGATTGGTGCTATT
TGGTCTTTCTTCGAAATGTGTACAGCAAAAATGATCAAACGCAAAATCTT
TATGAGATGCTCGGCGGACGGTAAAAANGAAAATTATCAAACGCAAAATC
TTTATGAGATGCTCGGCGGACGGTAAAAATGGTATCGGAACAGTTTTTTC
TGGAAATCGTTTGAATATCGATGATAACCATAATTCAATGTCAGTGTTTA
TGTTAATGTAATGTTGACTTTCGAAAGACAGGGTATTCTCACCGACACAG
ATCACTGGGAAAAATGTCCAGTCGGCACCAAACTGATCACCTAATCTTTC
TTGGAATAGCGTGTGATATTTTTCGATTTGGTTAAAAgcggtgtcattga
gttgtctcTTTATTTCGATACCAATGACGAGTTTTCTTGGCCAAGAGAAA
ATGATCAGGTCAAATTCTTGATGTTTCTTTTTGTTGACGTCAGTTATAAA
ACAAACCGATTGAAGGATAACTGTATCGTTTAATAAAGTATCCTCTCTCA
TAGACAATAATTTATCGAAGAACATTTGTTCGTAAGCCTCGCCACGATAT
GATAACACCaattcaaaaaaccataacaagTTTGAATCCGTGCATGGGTT
TTGTTCAATCAGTTTCTCTATTCCACGTTTGAGAATCTTTTTCCCGTTCA
CATTCCCTAAAGTTTGTAGACAATTTTGTAGAGTGGCTTCAAGCTCTGTT
CCTCGTTTCTTACAATTCAATTCAGCAAGGCAGCCTTTAATGAAGATAAT
TGTTTCTGAAGTTGAAGGTGGTAAATTGACCTCTTTTCCATGCAATTCCT
GGGCAACGAGATATGACATTTTAACGTTTAGTATCCACTTGTCAAAATCA
GCAGCATCAATTTCTTTAGCATCATCAGTTGATAATCCTTGTTGTTGGAC
GAAAGTTTTTAACTGTTCTGTGAACCAATGATTGGGAAATTCATTCGATA
AGTTAGCCAACGTTGTCAGAAATCTTGTTTCGAAGTCGTAATCCAAAAGA
GGAACTGCAGATTTACTTGTATATTGATTTGAACAAAACACTGGAGGAAT
GAATACACATTTGTGTTTTGTGTTATCAACGAGAGAAGAATCGCCATATT
CTCTCTGAAGTAAATAATCAGCTGCAGTTATTGGATCGGTGAATATTTGC
CCGTTCCCGAGGTTAAACTGTTTCGTTTGatgttgtaatgtttttctagA
GTATCTAAGAACTTGTTGGTGTAGTGATTTACCCAGAGTGCATTTCGATG
GGTCGATAATTTTCGGTTTCATAGCCTTTACCTTATTCCCCATACTGTTG
TTATTCGCTGCAgccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073774-exon-scaffold_97-1491911889:796420..798024 | TCONS_00073774-exon-scaffold_97-1491911889:796420..798024 | Clytia hemisphaerica | exon |
| TCONS_00073774-exon-scaffold_97-1510915933:796420..798024 | TCONS_00073774-exon-scaffold_97-1510915933:796420..798024 | Clytia hemisphaerica | exon |
| TCONS_00073774-exon-scaffold_97-1575043694:796420..798024 | TCONS_00073774-exon-scaffold_97-1575043694:796420..798024 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_97 | supercontig | scaffold_97:796420..798024 . |
Blast
The following BLAST results are available for this feature:
|
