Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073760 ID=TCONS_00073760|Name=TCONS_00073760|organism=Clytia hemisphaerica|type=transcript|length=876bp
GTCCAGTAATTATTAGAATATAAGAAAGttacaaaattagaaaattataA
TTGTAATCAGTGGCAACAAGAACATCTTTTTTGAATAACCAAACCATTTC
GTTTAGATCTATAAGTGCTGTAATGTTTATAGTGATGTGTTGTATTATGA
GGCCTATAACCTTTGTTCAAACTCTTGTCGCGTTTGTTTCTATtagtatt
ttgttttgaattttcatgaACGGTTCGGTTATGTCTTACGAGACTACTCT
TACTCATATAATCTTTGTCACATTGTTCACATTCAAAAATTGGTCTCCGA
TTATTCTTGATAAGCATATACATATCGTTTGCCCATTTCAGAATGCATTT
GCGAGAACATGCACTTAAATTTCCATGTGTAATAATTTTACCAcaaacat
gacatttatttgATATGCTACTTGCTCCTGATTTTTGACTTGGAACAGTG
TTTAAAGGGATTTTACACCTTTcgaccaaaacaaaacaaggtTTTATTCG
TGGATCCACATTTTTCGGTTTACAATCATAGCCAATGTCTGACGGTTTGA
TATCCAATAAAAAATTGTCTTTATTTATCAAGAAACTAtaatcaaattca
acttttattTTGTCCAACTCATTTAAATTTTCCGATACGGCATTAGTTGG
TAGTGGCACTGTATCTTCGAATTCGATTTTAATATTGAAAGGATTGGTTT
GTTGAAATATGGTTTCTTCGTATCCAATGTCTTCACTTTCCATTTTAATA
GGTTTTCCACtttccattttttcttcttgtttatTCTAGTCTACAGTaaa
agtgaaaattaaaaaaggagATATCATTTCACTAAATTTAAGTTAcatat
actctcgggtacctaatagccggggg Run BLAST on NCBI protein sequence of TCONS_00073760-protein >TCONS_00073760-protein ID=TCONS_00073760-protein|Name=TCONS_00073760-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
MESGKPIKMESEDIGYEETIFQQTNPFNIKIEFEDTVPLPTNAVSENLNE
LDKIKVEFDYSFLINKDNFLLDIKPSDIGYDCKPKNVDPRIKPCFVLVER
CKIPLNTVPSQKSGASSISNKCHVCGKIITHGNLSACSRKCILKWANDMY
MLIKNNRRPIFECEQCDKDYMSKSSLVRHNRTVHENSKQNTNRNKRDKSL
NKGYRPHNTTHHYKHYSTYRSKRNGLVIQKRCSCCH Run BLAST on NCBI transcript from alignment at scaffold_97:483195..484070 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073760 ID=TCONS_00073760|Name=TCONS_00073760|organism=Clytia hemisphaerica|type=transcript|length=876bp|location=Sequence derived from alignment at scaffold_97:483195..484070 (Clytia hemisphaerica)
cccccggctattaggtacccgagagtatatgTAACTTAAATTTAGTGAAA
TGATATctccttttttaattttcacttttACTGTAGACTAGAataaacaa
gaagaaaaaatggaaaGTGGAAAACCTATTAAAATGGAAAGTGAAGACAT
TGGATACGAAGAAACCATATTTCAACAAACCAATCCTTTCAATATTAAAA
TCGAATTCGAAGATACAGTGCCACTACCAACTAATGCCGTATCGGAAAAT
TTAAATGAGTTGGACAAaataaaagttgaatttgattaTAGTTTCTTGAT
AAATAAAGACAATTTTTTATTGGATATCAAACCGTCAGACATTGGCTATG
ATTGTAAACCGAAAAATGTGGATCCACGAATAAAaccttgttttgttttg
gtcgAAAGGTGTAAAATCCCTTTAAACACTGTTCCAAGTCAAAAATCAGG
AGCAAGTAGCATATcaaataaatgtcatgtttgTGGTAAAATTATTACAC
ATGGAAATTTAAGTGCATGTTCTCGCAAATGCATTCTGAAATGGGCAAAC
GATATGTATATGCTTATCAAGAATAATCGGAGACCAATTTTTGAATGTGA
ACAATGTGACAAAGATTATATGAGTAAGAGTAGTCTCGTAAGACATAACC
GAACCGTtcatgaaaattcaaaacaaaatactaATAGAAACAAACGCGAC
AAGAGTTTGAACAAAGGTTATAGGCCTCATAATACAACACATCACTATAA
ACATTACAGCACTTATAGATCTAAACGAAATGGTTTGGTTATTCAAAAAA
GATGTTCTTGTTGCCACTGATTACAATtataattttctaattttgtaaCT
TTCTTATATTCTAATAATTACTGGAC Coding sequence (CDS) from alignment at scaffold_97:483195..484070 >TCONS_00073760 ID=TCONS_00073760|Name=TCONS_00073760|organism=Clytia hemisphaerica|type=CDS|length=711bp|location=Sequence derived from alignment at scaffold_97:483195..484070 (Clytia hemisphaerica)
atggaaaGTGGAAAACCTATTAAAATGGAAAGTGAAGACATTGGATACGA
AGAAACCATATTTCAACAAACCAATCCTTTCAATATTAAAATCGAATTCG
AAGATACAGTGCCACTACCAACTAATGCCGTATCGGAAAATTTAAATGAG
TTGGACAAaataaaagttgaatttgattaTAGTTTCTTGATAAATAAAGA
CAATTTTTTATTGGATATCAAACCGTCAGACATTGGCTATGATTGTAAAC
CGAAAAATGTGGATCCACGAATAAAaccttgttttgttttggtcgAAAGG
TGTAAAATCCCTTTAAACACTGTTCCAAGTCAAAAATCAGGAGCAAGTAG
CATATcaaataaatgtcatgtttgTGGTAAAATTATTACACATGGAAATT
TAAGTGCATGTTCTCGCAAATGCATTCTGAAATGGGCAAACGATATGTAT
ATGCTTATCAAGAATAATCGGAGACCAATTTTTGAATGTGAACAATGTGA
CAAAGATTATATGAGTAAGAGTAGTCTCGTAAGACATAACCGAACCGTtc
atgaaaattcaaaacaaaatactaATAGAAACAAACGCGACAAGAGTTTG
AACAAAGGTTATAGGCCTCATAATACAACACATCACTATAAACATTACAG
CACTTATAGATCTAAACGAAATGGTTTGGTTATTCAAAAAAGATGTTCTT
GTTGCCACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073760-exon-scaffold_97-1491911889:483195..484070 | TCONS_00073760-exon-scaffold_97-1491911889:483195..484070 | Clytia hemisphaerica | exon |
| TCONS_00073760-exon-scaffold_97-1510915933:483195..484070 | TCONS_00073760-exon-scaffold_97-1510915933:483195..484070 | Clytia hemisphaerica | exon |
| TCONS_00073760-exon-scaffold_97-1575043694:483195..484070 | TCONS_00073760-exon-scaffold_97-1575043694:483195..484070 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_97 | supercontig | scaffold_97:483195..484070 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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