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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073757 ID=TCONS_00073757|Name=TCONS_00073757|organism=Clytia hemisphaerica|type=transcript|length=1491bp
CAGGTGAAGTGTTGTTTAGCTTCTGAACGGATTTCTTTATTTCATCATCG
GTAGGTTCATGGTCACATCCATGGACAATATCATGGTGGGGAATTGTGTC
AAGGACAGATTGGTCGAAATTTGCCTCCCTATTGTAGAGATGATTAAAGT
GTTCGTAAAAGACTGATGCATTTTCTTGTGGTGTTGCACATAAGGTACCG
TCTGGCTTTTTCATATGTCTTGATACTGAAGGTTTAGGTTTTGAAAGCCC
ACATTTGAGGATCTTGAGGGATTCCCAAGCTTTCTTTGTACCTTGATAAC
GGTTCACAGTGACACAATGGTTAAGTATCCAATCGTTCTTTGATTTAATT
ATCATGgcttttagattttttctagCTAGACGGAGACGATTAGTAGAAGA
TCACGTCGATCGTTTTAAAACGTCCTTCATAGCTTGATTTCGGGAGTGAA
TCAACGAAAGGAGCTTTGAAGAATTAGCTTCGAACCAGCCGGGTtgactt
ttgtttttctttgggaGCGTTTCTTCGCATACCTTTTTAATTGTGCTTGA
GAACATTTCGTATCCAGGAGAAGTAGAAAAGTTCAGTTTTTGTGCTACAT
TTCCACAAAAATCATTCTGTTTAGTCACATTTGAAAGCACAGAGAGGTCG
AGGTTGATCATTTTTTGGCGTGGTTCAGATTTCTTTTTTAACCGTTTCAT
AAGCTTAAGTTTGATANTTTTGATGGTCAGTTAAAAGAAGTCGAATCGCT
ACTACTCTTGCACCAAAGTTCGTGTGCTTTTCGTAACCTCCTGCTTTCCA
CGCAGCGTCACCATCTGCGTTTAAGACGATTGAAACTCCTTGGGAACCTC
TTTTACCGCGCTGTGTACTTTCGTCAAGACCGGACGAGACAATTTTAAAG
AAGCCGTGCTCCAACAATTCGTTTCCACTTCGCCATGTTTCTTGGACACA
CATTGCAATAGCGTTTCTTTCCTTCATTACATTTAACAAAATTTCGATAC
GAGTATCATTTTTCATACCCCGAACGTTTTGAGATAATATTTTGACTGTC
CTGATAATATGTCTGTTTCTTACTTTTGCCATTACTGCCTTCCAAGCTTG
CGAGGCCTGGAGGAACAGCGGAGATTAAAAGTCCAATTCTactagactag
caagcgtctgtctttccttggacacagcaACGCGGGAATAgcgcttataa
taaagagttcttataaaaaatagaaattgccgcgggagagtggattggaa
agacattgttgtattcagtgaacatataaaaaaaatagatcCCATTGAAA
GTTTATTCTGCagcgacgtggtttactagtctaaatTCTACTTGAGTGGA
AACCAGTGTGATTCGCGTTAACTCGAAGTCTGATGAAAAGGACGTCTCCT
TCTTCTGTGCTAGATGTTTGTCATATCCATATTGTGTTGTTCCTCTTCTT
CTGGGTGTGGTGGCTGACGGACCTTGTGATGCCGGTTCAGG Run BLAST on NCBI protein sequence of TCONS_00073757-protein >TCONS_00073757-protein ID=TCONS_00073757-protein|Name=TCONS_00073757-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MAKVRNRHIIRTVKILSQNVRGMKNDTRIEILLNVMKERNAIAMCVQETW
RSGNELLEHGFFKIVSSGLDESTQRGKRGSQGVSIVLNADGDAAWKAGGY
EKHTNFGARVVAIRLLLTDHQXYQT Run BLAST on NCBI transcript from alignment at scaffold_97:254020..255510 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073757 ID=TCONS_00073757|Name=TCONS_00073757|organism=Clytia hemisphaerica|type=transcript|length=1491bp|location=Sequence derived from alignment at scaffold_97:254020..255510 (Clytia hemisphaerica)
CCTGAACCGGCATCACAAGGTCCGTCAGCCACCACACCCAGAAGAAGAGG
AACAACACAATATGGATATGACAAACATCTAGCACAGAAGAAGGAGACGT
CCTTTTCATCAGACTTCGAGTTAACGCGAATCACACTGGTTTCCACTCAA
GTAGAatttagactagtaaaccacgtcgctGCAGAATAAACTTTCAATGG
gatctattttttttatatgttcactgaatacaacaatgtctttccaatcc
actctcccgcggcaatttctattttttataagaactctttattataagcg
cTATTCCCGCGTtgctgtgtccaaggaaagacagacgcttgctagtctag
tAGAATTGGACTTTTAATCTCCGCTGTTCCTCCAGGCCTCGCAAGCTTGG
AAGGCAGTAATGGCAAAAGTAAGAAACAGACATATTATCAGGACAGTCAA
AATATTATCTCAAAACGTTCGGGGTATGAAAAATGATACTCGTATCGAAA
TTTTGTTAAATGTAATGAAGGAAAGAAACGCTATTGCAATGTGTGTCCAA
GAAACATGGCGAAGTGGAAACGAATTGTTGGAGCACGGCTTCTTTAAAAT
TGTCTCGTCCGGTCTTGACGAAAGTACACAGCGCGGTAAAAGAGGTTCCC
AAGGAGTTTCAATCGTCTTAAACGCAGATGGTGACGCTGCGTGGAAAGCA
GGAGGTTACGAAAAGCACACGAACTTTGGTGCAAGAGTAGTAGCGATTCG
ACTTCTTTTAACTGACCATCAAAANTATCAAACTTAAGCTTATGAAACGG
TTAAAAAAGAAATCTGAACCACGCCAAAAAATGATCAACCTCGACCTCTC
TGTGCTTTCAAATGTGACTAAACAGAATGATTTTTGTGGAAATGTAGCAC
AAAAACTGAACTTTTCTACTTCTCCTGGATACGAAATGTTCTCAAGCACA
ATTAAAAAGGTATGCGAAGAAACGCtcccaaagaaaaacaaaagtcaACC
CGGCTGGTTCGAAGCTAATTCTTCAAAGCTCCTTTCGTTGATTCACTCCC
GAAATCAAGCTATGAAGGACGTTTTAAAACGATCGACGTGATCTTCTACT
AATCGTCTCCGTCTAGctagaaaaaatctaaaagcCATGATAATTAAATC
AAAGAACGATTGGATACTTAACCATTGTGTCACTGTGAACCGTTATCAAG
GTACAAAGAAAGCTTGGGAATCCCTCAAGATCCTCAAATGTGGGCTTTCA
AAACCTAAACCTTCAGTATCAAGACATATGAAAAAGCCAGACGGTACCTT
ATGTGCAACACCACAAGAAAATGCATCAGTCTTTTACGAACACTTTAATC
ATCTCTACAATAGGGAGGCAAATTTCGACCAATCTGTCCTTGACACAATT
CCCCACCATGATATTGTCCATGGATGTGACCATGAACCTACCGATGATGA
AATAAAGAAATCCGTTCAGAAGCTAAACAACACTTCACCTG Coding sequence (CDS) from alignment at scaffold_97:254020..255510 >TCONS_00073757 ID=TCONS_00073757|Name=TCONS_00073757|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at scaffold_97:254020..255510 (Clytia hemisphaerica)
ATGGCAAAAGTAAGAAACAGACATATTATCAGGACAGTCAAAATATTATC
TCAAAACGTTCGGGGTATGAAAAATGATACTCGTATCGAAATTTTGTTAA
ATGTAATGAAGGAAAGAAACGCTATTGCAATGTGTGTCCAAGAAACATGG
CGAAGTGGAAACGAATTGTTGGAGCACGGCTTCTTTAAAATTGTCTCGTC
CGGTCTTGACGAAAGTACACAGCGCGGTAAAAGAGGTTCCCAAGGAGTTT
CAATCGTCTTAAACGCAGATGGTGACGCTGCGTGGAAAGCAGGAGGTTAC
GAAAAGCACACGAACTTTGGTGCAAGAGTAGTAGCGATTCGACTTCTTTT
AACTGACCATCAAAANTATCAAACTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073757-exon-scaffold_97-1491911889:254020..255510 | TCONS_00073757-exon-scaffold_97-1491911889:254020..255510 | Clytia hemisphaerica | exon |
| TCONS_00073757-exon-scaffold_97-1510915933:254020..255510 | TCONS_00073757-exon-scaffold_97-1510915933:254020..255510 | Clytia hemisphaerica | exon |
| TCONS_00073757-exon-scaffold_97-1575043694:254020..255510 | TCONS_00073757-exon-scaffold_97-1575043694:254020..255510 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_97 | supercontig | scaffold_97:254020..255510 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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