TCONS_00073747 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073747
Unique NameTCONS_00073747
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1943

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073747 ID=TCONS_00073747|Name=TCONS_00073747|organism=Clytia hemisphaerica|type=transcript|length=1943bp
GTCGCAATCTCTCTATTTTTGATTGGATGATGAATCTCATTGGTTATTTG
CTAGATGATATGGGTGTCGATTGGTTAAACATGTAAATAATAGCTACTTT
ATCGCTGTAGAGATAAAAGGAGGCTAAAATCGTTTATTGCTGAGGTGGCA
CTGACAAAGCCCTGACTCAGGCATTGCCATCAAAACATTGGAAAggagaa
tttaaaatttttttgtaaatcagTCCATGTGGATTTGATATAAGACGATG
AGCTCAAACATTGTAACCGATAGTTCGAAGAATTCTGCAGAAGCAACAGC
ACTAATCAAGGAGATAATAGCAGCCAATTACAAATCTCAGAAGACTTCTG
TGGCTTATCCTTCCTTTGCACAATCTGGTCTCGAAGCTGCCGTTGTAGCA
GGCGAGAAGAGAAGTTTTGATACTGTTACTATTCCAAGTCATCTTCAAGA
TCACCAGATTGCTTTGGCTACTCCACCAAAACAGGCTCGAAGTGATGAAA
TTGTTGTTTCATTAAGTAATGTCCATTCATTGAACGAGCAAGGCAGTTCA
AATACAACAATTCAAGTTGTCGATGTTGATACAACTGATAATAATATTGT
TATAGACCCATCAAAGCAAATAACTCAAATTCATAACAGCAACGAGATTG
GATCAACAGCAGCAATCAACATTGTTGAAGAGGGATCTGATATGACTGGG
GATAAAATAACCACTGTTAATATGACAATGCCAAGTGTAGATATCCCAAA
TAATGTCTCTACTGCAGCCGCAAACCAACAATCATCTCAACAAAGTAACT
TTGTCATTACAGAAATTAAACCTCCAGAAAATCAGCAGATTGTTCTGACA
GAAGAAGAACTTGCTGAAATGCCAGTCAAAGATTTGAATGCTCTTTTGAG
AGGATTGCCAGATGCAGAAGTGATTAAACTGAAACAGCGTAGACGAACAA
TTAAAAATAGAGGCTATGCACAAACAAGTCGAACGAAAAGAACGACACAA
AAAAGCACTTTAGAGGATGAGAAATCTATATTAGAATCAGAACTGCAAAA
ACTGGCAGATGAGAATGACTTGCTTCGTAAAGAGAGAGATGAAGCTAAAA
TTAAATTGGAAGCATTTGAAAGATTTGCCGGTATGAGTGGGATAGTTATT
GTAACAAATGATAATGCAGCATCAATGCAAGCTAACACTACAACAAATGT
AGTAACCCAAatgaaacaagaaaataaacagacaataataaacaatccta
cacaACCTATTGATATTTCATCAACAAACATTGTTAATTTATTAGATAGA
AATAGATCTCAAAAATTTAATGTTGCTGGTATAATAAACACTGGAATGGC
TCCTGGTCTTGCACCCAGTTTggtcaaaaagccttaaaaatatcgatttt
ttactttttctcacATTTTATTATTCTGTAGATACTGAATGTACATATAT
ACCCTAagataattatcatttttttagttttattttctttactaTTTTAC
AGctgatgatgatttttgttGGTTAAAAGTCACAAGAATTGTAAATTATA
GTAATGTACACATTATCTTCATGATGTCCTCCAGGTTTTCAGTTTTACCC
CCACTTCCCATAAAATATCCCGAAATTCCCCCATCAAGGTGAAAATATTC
ACTTCCCCTCCAGGACAAAAGTTGATTTCTCCCTCTATCTTCCTGGGGCT
GAGGATCCCATGATCTTTTTTCCCTGGAAttgaaaaagttcatttttggt
AATTTAATTTGGCTTGGAAAAGGAAAAGTACATTACTTTGACTGTAAAAA
TTTGTCATAGCAAAGATGTAATTACTTCATAAATTACATGGCAATTTCAA
AAATGCTGATCTAGTAATTCATTGAAATGAAAGTGATATTGAaagatttc
attttgaaatatttgtgaAGCAATTTAAAGCCATTTAAATAAG
Run BLAST on NCBI

protein sequence of TCONS_00073747-protein

>TCONS_00073747-protein ID=TCONS_00073747-protein|Name=TCONS_00073747-protein|organism=Clytia hemisphaerica|type=polypeptide|length=379bp
MSSNIVTDSSKNSAEATALIKEIIAANYKSQKTSVAYPSFAQSGLEAAVV
AGEKRSFDTVTIPSHLQDHQIALATPPKQARSDEIVVSLSNVHSLNEQGS
SNTTIQVVDVDTTDNNIVIDPSKQITQIHNSNEIGSTAAINIVEEGSDMT
GDKITTVNMTMPSVDIPNNVSTAAANQQSSQQSNFVITEIKPPENQQIVL
TEEELAEMPVKDLNALLRGLPDAEVIKLKQRRRTIKNRGYAQTSRTKRTT
QKSTLEDEKSILESELQKLADENDLLRKERDEAKIKLEAFERFAGMSGIV
IVTNDNAASMQANTTTNVVTQMKQENKQTIINNPTQPIDISSTNIVNLLD
RNRSQKFNVAGIINTGMAPGLAPSLVKKP
Run BLAST on NCBI

transcript from alignment at scaffold_97:113370..115312

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073747 ID=TCONS_00073747|Name=TCONS_00073747|organism=Clytia hemisphaerica|type=transcript|length=1943bp|location=Sequence derived from alignment at scaffold_97:113370..115312 (Clytia hemisphaerica)
CTTATTTAAATGGCTTTAAATTGCTtcacaaatatttcaaaatgaaatct
tTCAATATCACTTTCATTTCAATGAATTACTAGATCAGCATTTTTGAAAT
TGCCATGTAATTTATGAAGTAATTACATCTTTGCTATGACAAATTTTTAC
AGTCAAAGTAATGTACTTTTCCTTTTCCAAGCCAAATTAAATTaccaaaa
atgaactttttcaaTTCCAGGGAAAAAAGATCATGGGATCCTCAGCCCCA
GGAAGATAGAGGGAGAAATCAACTTTTGTCCTGGAGGGGAAGTGAATATT
TTCACCTTGATGGGGGAATTTCGGGATATTTTATGGGAAGTGGGGGTAAA
ACTGAAAACCTGGAGGACATCATGAAGATAATGTGTACATTACTATAATT
TACAATTCTTGTGACTTTTAACCaacaaaaatcatcatcagCTGTAAAAt
agtaaagaaaataaaactaaaaaaatgataattatctTAGGGTATATATG
TACATTCAGTATCTACAGAATAATAAAATgtgagaaaaagtaaaaaatcg
atatttttaaggctttttgaccAAACTGGGTGCAAGACCAGGAGCCATTC
CAGTGTTTATTATACCAGCAACATTAAATTTTTGAGATCTATTTCTATCT
AATAAATTAACAATGTTTGTTGATGAAATATCAATAGGTtgtgtaggatt
gtttattattgtctgtttattttcttgtttcatTTGGGTTACTACATTTG
TTGTAGTGTTAGCTTGCATTGATGCTGCATTATCATTTGTTACAATAACT
ATCCCACTCATACCGGCAAATCTTTCAAATGCTTCCAATTTAATTTTAGC
TTCATCTCTCTCTTTACGAAGCAAGTCATTCTCATCTGCCAGTTTTTGCA
GTTCTGATTCTAATATAGATTTCTCATCCTCTAAAGTGCTTTTTTGTGTC
GTTCTTTTCGTTCGACTTGTTTGTGCATAGCCTCTATTTTTAATTGTTCG
TCTACGCTGTTTCAGTTTAATCACTTCTGCATCTGGCAATCCTCTCAAAA
GAGCATTCAAATCTTTGACTGGCATTTCAGCAAGTTCTTCTTCTGTCAGA
ACAATCTGCTGATTTTCTGGAGGTTTAATTTCTGTAATGACAAAGTTACT
TTGTTGAGATGATTGTTGGTTTGCGGCTGCAGTAGAGACATTATTTGGGA
TATCTACACTTGGCATTGTCATATTAACAGTGGTTATTTTATCCCCAGTC
ATATCAGATCCCTCTTCAACAATGTTGATTGCTGCTGTTGATCCAATCTC
GTTGCTGTTATGAATTTGAGTTATTTGCTTTGATGGGTCTATAACAATAT
TATTATCAGTTGTATCAACATCGACAACTTGAATTGTTGTATTTGAACTG
CCTTGCTCGTTCAATGAATGGACATTACTTAATGAAACAACAATTTCATC
ACTTCGAGCCTGTTTTGGTGGAGTAGCCAAAGCAATCTGGTGATCTTGAA
GATGACTTGGAATAGTAACAGTATCAAAACTTCTCTTCTCGCCTGCTACA
ACGGCAGCTTCGAGACCAGATTGTGCAAAGGAAGGATAAGCCACAGAAGT
CTTCTGAGATTTGTAATTGGCTGCTATTATCTCCTTGATTAGTGCTGTTG
CTTCTGCAGAATTCTTCGAACTATCGGTTACAATGTTTGAGCTCATCGTC
TTATATCAAATCCACATGGActgatttacaaaaaaattttaaattctccT
TTCCAATGTTTTGATGGCAATGCCTGAGTCAGGGCTTTGTCAGTGCCACC
TCAGCAATAAACGATTTTAGCCTCCTTTTATCTCTACAGCGATAAAGTAG
CTATTATTTACATGTTTAACCAATCGACACCCATATCATCTAGCAAATAA
CCAATGAGATTCATCATCCAATCAAAAATAGAGAGATTGCGAC

Coding sequence (CDS) from alignment at scaffold_97:113370..115312

>TCONS_00073747 ID=TCONS_00073747|Name=TCONS_00073747|organism=Clytia hemisphaerica|type=CDS|length=1140bp|location=Sequence derived from alignment at scaffold_97:113370..115312 (Clytia hemisphaerica)
ttaaggctttttgaccAAACTGGGTGCAAGACCAGGAGCCATTCCAGTGT
TTATTATACCAGCAACATTAAATTTTTGAGATCTATTTCTATCTAATAAA
TTAACAATGTTTGTTGATGAAATATCAATAGGTtgtgtaggattgtttat
tattgtctgtttattttcttgtttcatTTGGGTTACTACATTTGTTGTAG
TGTTAGCTTGCATTGATGCTGCATTATCATTTGTTACAATAACTATCCCA
CTCATACCGGCAAATCTTTCAAATGCTTCCAATTTAATTTTAGCTTCATC
TCTCTCTTTACGAAGCAAGTCATTCTCATCTGCCAGTTTTTGCAGTTCTG
ATTCTAATATAGATTTCTCATCCTCTAAAGTGCTTTTTTGTGTCGTTCTT
TTCGTTCGACTTGTTTGTGCATAGCCTCTATTTTTAATTGTTCGTCTACG
CTGTTTCAGTTTAATCACTTCTGCATCTGGCAATCCTCTCAAAAGAGCAT
TCAAATCTTTGACTGGCATTTCAGCAAGTTCTTCTTCTGTCAGAACAATC
TGCTGATTTTCTGGAGGTTTAATTTCTGTAATGACAAAGTTACTTTGTTG
AGATGATTGTTGGTTTGCGGCTGCAGTAGAGACATTATTTGGGATATCTA
CACTTGGCATTGTCATATTAACAGTGGTTATTTTATCCCCAGTCATATCA
GATCCCTCTTCAACAATGTTGATTGCTGCTGTTGATCCAATCTCGTTGCT
GTTATGAATTTGAGTTATTTGCTTTGATGGGTCTATAACAATATTATTAT
CAGTTGTATCAACATCGACAACTTGAATTGTTGTATTTGAACTGCCTTGC
TCGTTCAATGAATGGACATTACTTAATGAAACAACAATTTCATCACTTCG
AGCCTGTTTTGGTGGAGTAGCCAAAGCAATCTGGTGATCTTGAAGATGAC
TTGGAATAGTAACAGTATCAAAACTTCTCTTCTCGCCTGCTACAACGGCA
GCTTCGAGACCAGATTGTGCAAAGGAAGGATAAGCCACAGAAGTCTTCTG
AGATTTGTAATTGGCTGCTATTATCTCCTTGATTAGTGCTGTTGCTTCTG
CAGAATTCTTCGAACTATCGGTTACAATGTTTGAGCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045793XLOC_045793Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073747-proteinTCONS_00073747-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073747-exon-scaffold_97-1491911889:113370..115312TCONS_00073747-exon-scaffold_97-1491911889:113370..115312Clytia hemisphaericaexon
TCONS_00073747-exon-scaffold_97-1510915933:113370..115312TCONS_00073747-exon-scaffold_97-1510915933:113370..115312Clytia hemisphaericaexon
TCONS_00073747-exon-scaffold_97-1575043694:113370..115312TCONS_00073747-exon-scaffold_97-1575043694:113370..115312Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_97supercontigscaffold_97:113370..115312 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.6417	20.1114	11.027	9.92694	37.5521	27.2104	26.5677	27.7536	10.3103	11.8527	24.5636	11.3507	17.9345	7.54615	6.88941	10.9093	10.9512	11.2876	8.24306	15.4308	17.4081	20.2628	42.2264	36.8756	79.1912	60.6385	28.7281	24.8509	31.7019	34.0113
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004827bZIP
IPR004826bZIP_Maf
IPR008917TF_DNA-bd
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
[Close]
BLAST of TCONS_00073747 vs. Swiss-Prot (Human)
Match: MAFG (Transcription factor MafG OS=Homo sapiens GN=MAFG PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.993e-18
Identity = 53/103 (51.46%), Postives = 70/103 (67.96%), Query Frame = 2 
Query:  821 PPENQQIVLTEEELAEMPVKDLNALLRGLPDAEVIKLKQRRRTIKNRGYAXXXXXXXXXXXXXLEDEKSILESELQKLADENDLLRKERDEAKIKLEAFERFA 1129
            P EN    LT+EEL  M V++LN  LRGL   E+++LKQRRRT+KNRGYA + R KR TQK  LE +K+ L+ E++KLA EN  ++ E D  + K EA + FA
Sbjct:   17 PGENG-TSLTDEELVTMSVRELNQHLRGLSKEEIVQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQTFA 118
The following BLAST results are available for this feature:
BLAST of TCONS_00073747 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MAFG2.993e-1851.46Transcription factor MafG OS=Homo sapiens GN=MAFG ... [more]
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