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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073642 ID=TCONS_00073642|Name=TCONS_00073642|organism=Clytia hemisphaerica|type=transcript|length=2149bpRun BLAST on NCBI protein sequence of TCONS_00073642-protein >TCONS_00073642-protein ID=TCONS_00073642-protein|Name=TCONS_00073642-protein|organism=Clytia hemisphaerica|type=polypeptide|length=487bp MEDNSKEIEFIEKTIQRVKRKFQEDIPTEKKIKYLQQLDHLPISLIILKSRun BLAST on NCBI transcript from alignment at scaffold_97:81433..105176+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073642 ID=TCONS_00073642|Name=TCONS_00073642|organism=Clytia hemisphaerica|type=transcript|length=23744bp|location=Sequence derived from alignment at scaffold_97:81433..105176+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_97:81433..105176+ >TCONS_00073642 ID=TCONS_00073642|Name=TCONS_00073642|organism=Clytia hemisphaerica|type=CDS|length=20496bp|location=Sequence derived from alignment at scaffold_97:81433..105176+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073642 vs. Swiss-Prot (Human)
Match: ELOA1 (Elongin-A OS=Homo sapiens GN=ELOA PE=1 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 3.710e-26 Identity = 68/179 (37.99%), Postives = 110/179 (61.45%), Query Frame = 2
Query: 728 YKPNRSLPQINMTKPEKK----PVKEAPNYNVDITSKKTRSQM--YTGKKANTSGVVQSLYQTCMKVLLDNFDCLYETGGVPYALLEPLLSKCTPSQLQRFEYYNEYILDDSDILWKTHCHKEFKGSRVQQRDDEY--WRDTFSXXXXXXXXXXXXXSNKISASQLSKLPERSTKLAYV 1240
Y+P SL I+ +P++K P +E T ++ S+M Y+G K + +L+Q C++VL +N D ++E GGVPY++LEP+L +CTP QL R E YN +++++D LWK HCH++FK ++R +EY WR+ + RL + RE+RL+ L+ I + +K R K+A+V
Sbjct: 521 YRPLPSLELISSFQPKRKAFSSPQEEE---EAGFTGRRMNSKMQVYSGSKCAYLPKMMTLHQQCIRVLKNNIDSIFEVGGVPYSVLEPVLERCTPDQLYRIEEYNHVLIEETDQLWKVHCHRDFK----EERPEEYESWREMYLRLQDAREQRLRVLTKNIQFAHANKPKGRQAKMAFV 692 The following BLAST results are available for this feature:
BLAST of TCONS_00073642 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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