TCONS_00073642-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073642-protein
Unique NameTCONS_00073642-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length487

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073642-protein ID=TCONS_00073642-protein|Name=TCONS_00073642-protein|organism=Clytia hemisphaerica|type=polypeptide|length=487bp
MEDNSKEIEFIEKTIQRVKRKFQEDIPTEKKIKYLQQLDHLPISLIILKS
TGVGKFVNKLRQDQNEVISQKSDHLVNKWKRLASDEKTRSPEKSHHKEPV
VHSSYSSSSRPSSSLSKSSSSKSPTNNDDSDNENEPKKDENSSFRNNKNV
SFGDALMMPVIDVNRKKKKKKKDNDLLKMPLPSRIDLPSLNDDEGSFTPE
PVYKPNRSLPQINMTKPEKKPVKEAPNYNVDITSKKTRSQMYTGKKANTS
GVVQSLYQTCMKVLLDNFDCLYETGGVPYALLEPLLSKCTPSQLQRFEYY
NEYILDDSDILWKTHCHKEFKGSRVQQRDDEYWRDTFSRLNEEREERLQR
LSNKISASQLSKLPERSTKLAYVAGSIKGWGHMKKFNDKKELKNRIDNDQ
RSTAEVAIPFGKIPKRDRCSRKPPTSLTSTNRDKIPMPPRRINGESSGPS
RLNPSAIKKPTKKPMMAAAMKLLKNQQGRSSSQIIRR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045732XLOC_045732Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073642TCONS_00073642Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003617TFIIS/CRSP70_N_sub
IPR017923TFIIS_N
IPR010684RNA_pol_II_trans_fac_SIII_A
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1..21
NoneNo IPR availableCOILSCoilCoilcoord: 334..361
NoneNo IPR availableGENE3D1.20.930.10coord: 1..100
e-value: 9.0E-17
score: 60.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 414..464
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..151
IPR003617Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-typeSMARTSM00509TFS2_5coord: 15..85
e-value: 2.4E-4
score: 30.4
IPR017923Transcription factor IIS, N-terminalPFAMPF08711Med26coord: 33..82
e-value: 8.0E-12
score: 44.9
IPR017923Transcription factor IIS, N-terminalPROSITEPS51319TFIIS_Ncoord: 13..86
score: 14.153
IPR017923Transcription factor IIS, N-terminalSUPERFAMILY47676Conserved domain common to transcription factors TFIIS, elongin A, CRSP70coord: 13..97
IPR010684RNA polymerase II transcription factor SIII, subunit APFAMPF06881Elongin_Acoord: 273..359
e-value: 5.7E-18
score: 65.3

Blast
[Close]
BLAST of TCONS_00073642-protein vs. Swiss-Prot (Human)
Match: ELOA1 (Elongin-A OS=Homo sapiens GN=ELOA PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 2.284e-33
Identity = 68/179 (37.99%), Postives = 110/179 (61.45%), Query Frame = 0 
Query:  203 YKPNRSLPQINMTKPEKK----PVKEAPNYNVDITSKKTRSQM--YTGKKANTSGVVQSLYQTCMKVLLDNFDCLYETGGVPYALLEPLLSKCTPSQLQRFEYYNEYILDDSDILWKTHCHKEFKGSRVQQRDDEY--WRDTFSRLNEEREERLQRLSNKISASQLSKLPERSTKLAYV 373
            Y+P  SL  I+  +P++K    P +E        T ++  S+M  Y+G K      + +L+Q C++VL +N D ++E GGVPY++LEP+L +CTP QL R E YN  +++++D LWK HCH++FK    ++R +EY  WR+ + RL + RE+RL+ L+  I  +  +K   R  K+A+V
Sbjct:  521 YRPLPSLELISSFQPKRKAFSSPQEEE---EAGFTGRRMNSKMQVYSGSKCAYLPKMMTLHQQCIRVLKNNIDSIFEVGGVPYSVLEPVLERCTPDQLYRIEEYNHVLIEETDQLWKVHCHRDFK----EERPEEYESWREMYLRLQDAREQRLRVLTKNIQFAHANKPKGRQAKMAFV 692
The following BLAST results are available for this feature:
BLAST of TCONS_00073642-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ELOA12.284e-3337.99Elongin-A OS=Homo sapiens GN=ELOA PE=1 SV=2[more]
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