TCONS_00073633 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073633
Unique NameTCONS_00073633
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length554

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073633 ID=TCONS_00073633|Name=TCONS_00073633|organism=Clytia hemisphaerica|type=transcript|length=554bp
atttggttttattgataataattttctttgtctAATAATATCTTCTTTCC
CGTTTTTGTGCTCACAATCTCATGCCCACTATTTTGCAGACCATGCTACC
TGAAAGTTATGTACATTAGAATGACCTTTaacagaccaaatcaaaccata
aaaactattattctccccaattagataacgttttaagctgttttgagggt
gtaaaaagtgaaaaattttcttcgtcgaccaaccatggtgggcgacattt
cTTTCCTAAACCTTCCCCTCCCCCACTCAAATGGCTCGCCGTGGCCCATG
AATCTGCATACTCTCTTCTCTCTCTCTcaattgtaaaaattgtttgctga
agggtacaaagattttcttgaaatagtTGGTCGACATTCAATCATCTTTG
ACATTAATGATCTTTGACATTTTCAGCTCTGTCACATCCAAAATCAATGT
CATAAGCATGAAATCTTACTTGTGTTTTACTGCCTATAAATTCTCTACTT
GGGAAGACCACTTACTCGACCTAACTTAAACTAGGACTACAATTAGAAAA
CATT
Run BLAST on NCBI

transcript from alignment at scaffold_96:670..1223

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073633 ID=TCONS_00073633|Name=TCONS_00073633|organism=Clytia hemisphaerica|type=transcript|length=554bp|location=Sequence derived from alignment at scaffold_96:670..1223 (Clytia hemisphaerica)
AATGTTTTCTAATTGTAGTCCTAGTTTAAGTTAGGTCGAGTAAGTGGTCT
TCCCAAGTAGAGAATTTATAGGCAGTAAAACACAAGTAAGATTTCATGCT
TATGACATTGATTTTGGATGTGACAGAGCTGAAAATGTCAAAGATCATTA
ATGTCAAAGATGATTGAATGTCGACCAactatttcaagaaaatctttgta
cccttcagcaaacaatttttacaattgAGAGAGAGAGAAGAGAGTATGCA
GATTCATGGGCCACGGCGAGCCATTTGAGTGGGGGAGGGGAAGGTTTAGG
AAAgaaatgtcgcccaccatggttggtcgacgaagaaaatttttcacttt
ttacaccctcaaaacagcttaaaacgttatctaattggggagaataatag
tttttatggtttgatttggtctgttAAAGGTCATTCTAATGTACATAACT
TTCAGGTAGCATGGTCTGCAAAATAGTGGGCATGAGATTGTGAGCACAAA
AACGGGAAAGAAGATATTATTagacaaagaaaattattatcaataaaacc
aaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045723XLOC_045723Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073633-exon-scaffold_96-1491911889:670..1223TCONS_00073633-exon-scaffold_96-1491911889:670..1223Clytia hemisphaericaexon
TCONS_00073633-exon-scaffold_96-1510915933:670..1223TCONS_00073633-exon-scaffold_96-1510915933:670..1223Clytia hemisphaericaexon
TCONS_00073633-exon-scaffold_96-1575043694:670..1223TCONS_00073633-exon-scaffold_96-1575043694:670..1223Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_96supercontigscaffold_96:670..1223 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.64446	1.72618	2.53026	3.71475	0.832512	1.07	0.757922	0.921168	0.594988	0.449739	0.378599	0.482575	0.870088	0.721434	0.785409	1.25553	0.602803	0.63785	1.10704	1.67196	1.09218	0.684803	0	0.749998	0.714595	1.40224	0.702824	1.26928	0.380526	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073633 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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