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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073549 ID=TCONS_00073549|Name=TCONS_00073549|organism=Clytia hemisphaerica|type=transcript|length=2493bp
cagaaataaagaaacaaaaacataaacataaaatgGCTGCTCAAAAACTA
ACAAAACATTACCAGAAACCATGGCAACTGTTGGTCTCTGTTTGTCTCAC
TCGTACAAATACCGTCACTAAAGAATTAACGGACATCCAGACAAGATATG
CAGAATTAATGGAAAAAGTTGAGCTGGAGAATTCAGTGTATAATGATTAC
GAGACGAGGAAACTAGAACTAAATCACGTGATGAATAGAACAGGAgctca
acaacaaaaaaaattgagtgaaaaagaagaagagaaaaTTACTGAAGCTT
CAAGAATGCTTGCTAATATACANGCTAAATCACGTAATGAATAGAACAGG
AgctcaacaacaaaaaaaattgagtgaaaaagaagaagagaaaaTTACTG
AAGCTTCAAGAATGCTTGCTAATATACAGGACCAAGAAGATATTTGGGCT
CAAGACACAGCCAAGCTTGAAGTTGCATCAAAGACAAGTTTTCATGACAA
TAACAAACAATCACCACATCGATTGATCGATCAAACTTTACACATGAGTG
TTCGAGATGATAGTTTATTAAACGAACCCTCTACCGTGCTTCCCTATACA
CCCTTGAACGAAGGAGAAACTCTGCGACAGGCATCAGAACGTCTCCTAGG
GACATATGGTATTCCAACATCGAACACGTTATTTCTTTCCAATGCTCCCT
GTGGAGTGATCAAGATTCGTTTCAAGGAGAACGAAGAACGTGGACAGGTC
TACCAAGGTGCTAAGgtgtTCTTTACCAAGGTTCGTATGACGTCACTGGA
TAACATCGACACTCAAAATACCCAAAACGACTGGTTATCGGTCAGTGAAA
TACAAGAACAATCCCAAAGCGAATATTTTCAAAGGCTTGAACGGTTttta
tagaagaaaaaaaatatttcttttctactGCGAATCGGCATGAAGTAAGT
CATAGTTTCGAGACGTTGATATCGTAATTTGACTCATTTTGGATGAATCt
acttttgtgaaaaattttgagacaAAAAATGGCTCATGTTTTAAGTGATT
CCATATCTTGCAATTATCGGAGCTTTTAAAACTCCAATAAGATCTATTGA
GACTACGTGATAATCTTGACTAAGACCATGAATTTAatatagacactgga
taaacaacgtataaaacggtggagagcgaagtattgtctttcttttgttt
aagaaaacaatcgaggatctagctttgtccgcaaaggacaactgtcatgg
tgGCTCGAAgctctctgattttgaaaaatctcatttctaaaaaatcttta
tctttttgtacttttactcGCCAAAAATTTGGAAGtaaatgctaaaatac
ttaACGGATACATTTATTAAATCTGGtgtgacaaaaacatcatcagacaa
gaaaaatcTAACTAAAGGCCTAAAATGACACAGAATTTTAAGTTGGCGAT
ATCTTTCTAACATCTTTCTGAGAAGAGCTATGATTGACATACAatagact
tgagtgtcttggcttcaccgtgatatgaaaatatttttgaggcTCGTGGT
GGATCGTTGGTCTTATTGAGGTTAAAATTTCTGGTGTCGACATTCGATTT
TTCATACATAGGATGTTTTTCGTATCTTTCTTgcaacttgaaacgtcata
aagacacataattagcaattattttgatgtgttcacctttctaaggaaaa
attaattttcatttgggaattgaaatgacTGTGTTAAGATGAAAAATCGT
TTAATgaaggaaggagagtgaacaataatgtcattactgcggacaaggct
agaacatgagaaatcaatgaaaatataactcattgtttatccagtgtcta
taataaattcttagAGATAATTTTTATGAGAAGACACCCAATCTGTATGT
TTTATTTCCTCACTTATGGCTAGCTTTTCAGTAAGTTTACTCAACTTTCA
AATCAATCTCTGGCTTATGatcaaatcttgaaaatatgataaaattggGC
CAAATCAGTGGTCAGAAAAACGATTTGAATGTTGATTGAACTTTTTAAAA
GATCTAAGGGTATGCGTAACAGTATTTCTGAATTTTTACCTTATATGACA
AGGAACTGTGCTGAAGTGCTGAATTTCATTCAAAGAAAGACAAACTGTAT
CACATTAAGGGTTGGTACAAGAAAAGTTCCGCAGCCTCTTTTTACGTATG
TCATTTGTTATACGGTTTTCTTTTCGTCGTTCGATCATCTCTTGATAGGT
CTTGAAAATTTCATCGAAACTTACGAATCTGAGATTTCTCTCACGTGCGC
GAATGGAGTTTAATTATGGTTTTCGATTAATTTTACCCTTCCCGTAAAAA
GGTTTCGGTGCCCTTTAGTTTTTCATATTGTAAGAATCCTCATATCTTGA
GGattttcctctttctaaaagcaattgaagattataaaaatgtaaatatt
attatcttaaaattttttgtAATGAAGAAGAGTTAAGAATTTG Run BLAST on NCBI transcript from alignment at scaffold_94:449851..455333- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073549 ID=TCONS_00073549|Name=TCONS_00073549|organism=Clytia hemisphaerica|type=transcript|length=5483bp|location=Sequence derived from alignment at scaffold_94:449851..455333- (Clytia hemisphaerica)
CAGAAATAAAGAAACAAAAACATAAACATAAAATGGCTGCTCAAAAACTA
ACAAAACATTACCAGAAACCATGGCAACTGTTGGTCTCTGTTTGTCTCAC
TCGTACAAATACCGTCACTAAAGAATTAACGGACATCCAGACAAGATATG
CAGAATTAATGGAAAAAGTTGAGCTGGAGAATTCAGTGTATAATGATTAC
GAGACGAGGAAACTAGAACTAAATCACGTGATGAATAGAACAGGAGCTCA
ACAACAAAAAAAATTGAGTGAAAAAGAAGAAGAGAAAATTACTGAAGCTT
CAAGAATGCTTGCTAATATACANGCTAAATCACGTAATGAATAGAACAGG
AGCTCAACAACAAAAAAAATTGAGTGAAAAAGAAGAAGAGAAAATTACTG
AAGCTTCAAGAATGCTTGCTAATATACAGGTACCACATTCTTTTTTTCGT
CTTAAATAGGACGCCCCCTGTTGGAACTGCACCTTGCTTTTTGGTTACTA
CAGAAAGAAAATTTGGCGGATTGACCCGAAATTTGTCAGATTAAGTTCAC
GTTCAAAATTTCTCATTCTGGCCATCTGTCAAATTTACTAACGATTTTGG
CAAAACATCCCTCAACCGCCAAATCAAATTCCTGCCAATTTTATCTTCTC
TAGCGATCCGCCAAATCAATTTCGTCCTGCTGAAATTTCAAAGCACATGA
AACTTTTATGTATAAGCCATCAAATTTTGAGTTAAAATATTAACCAGGTC
GGGTTTTACGACTTTATTGCCAACACAGATTGTAAAACCCAATCAATCCA
AATTACTTCAAATTTTACAGAATGAAGATTTGTTTCAGGTTACTCTTTAT
TTATCAAAATCGGAGGCCCATGATGTTCTTATACCGGGTGTGTCAAAAAA
AACGCGCCTATTTTTCTATTTTTGACGTACAAATTTCTATCAAACAAAGA
CAAATGAAATTTTCAGGGAAGATTTGAAATTTAATTTTTTATCCTTGGTG
AAAATTATACATTTCTATGTTCATTTAAAACGACTTTATGATAATTCCGC
TGACTTATGTCAAATTTTCATTGTTCACAGATTTTCATAGTTAAATTTTT
CCATATAAACAAGAAGCTAAAGTACGCTTCGTTTTTACTCTTTTATTTTG
TTTTGCTACTATTAAAACATTAAAATGGCATCATTTTTTCATTTCATAGT
TTAAGTTTTGTTCCAGGGTCAATATTTGATAAATTCTAACTAGTTCCAAC
CAAGCCATTTCTTACGTCAATTGCGACAACAAAAAAAGGACNTATTAAAA
TGGCATCATTTTTTCATTTCATAGGTTAAGTTTTGTTCCAGGGTCAATAT
TTGATAAATTCTAACTAGTTCCAACCAAGCCATTTCTTACGTCAATTGCG
ACAACAAAAAAAGGACNTTCGAAACAAAGTGAATACACAATTTGATTGTT
TTTATTGAAACGATAAGCACATTGAACTTATATTGCCTTTGTTATTTTTA
AGTAATTATAGAACTTTGCTACTTCCCAAAATACTATGCACAGTTTGGCA
ATAAGTTCATTATCGTAAAAAGATCGTAAAATGTGTTATACTATATGACT
GAAAAACTGTTTTATCATCACTACCCCCGTTTTTATTAAAAAGTTGGAGA
TTTGATGTTTCATAGAAAAATGCTACCAAGGGGTATTTCGGGTCCCATAT
CTTCCGAACGACTTTTCCGTTTGCCTTGAAATTTAACAATCTTCTTGAAC
TAAGGTTGAACTACCACTGGTGTAAAAATGACCGTTGTAGCATAAGTATA
AAAAAAGCTCAATTTTTGCAATCGCAAATTAAACCGCTAAAACTCGCGAA
TTTTTCAACAAAAAATACATTCAAATATAGCGCTTTTGATTTTCTAAATG
AAGCAAAAACATTTTTTGCAATTATATCGGACTATCAAAAGTTACAGGCA
TTCTTGTTTCCACTGCCAATTATATCTGGACAGACTTTAGTGTGATGAAG
TTAATCGTTTTAACCTCTTCCAAAACTAGTGGATTTTTAACACTTTAGCC
GATTGCAAAACGTTTAATGTATATCTAACATATAGTCGAACTTTTGTGAA
ATTTTCCTGTTTTTAGAAGTTTTAAATTAAAATTAAATTTCCCCGAGCTC
CGAAAATTTCTATGTCGAGTGCTAGATAAACTAAGACTCTCTTTTGATGA
AAGCACAACATTAAAAAAGGTCTTTATAGAATATCTTCCGTAAGCTCATT
GTTTTCTTCTTAGGACCAAGAAGATATTTGGGCTCAAGACACAGCCAAGC
TTGAAGTTGCATCAAAGACAAGTTTTCATGACAATAACAAACAATCACCA
CATCGATTGATCGATCAAACTTTACACATGAGTGTTCGAGATGATAGTTT
ATTAAACGAACCCTCTACCGTGCTTCCCTATACACCCTTGAACGAAGGAG
AAACTCTGCGACAGGTAATTTAATATCTTTAACAACGTTGGTAACATTGC
GATGTTAGGGACGTTAGATGAACGTTGATTCAATGACGTTTTTTGCCAGC
TTTGTCCGGAGATCAGAAAATAGTAGGAGGCCAACCTTTAGAATCAATAG
CATCCAATGGTATCAGTCATTCTCGTTTAATTTGAGTTTGAAAAATATGT
AGTCAATCTTTTACTAATTTTTGGGGTTTTGCTTACAATGTCAGTTTTTT
AGCCATAAAGACTTTTGCGAGGCCTAATTCGCGCACTCTCAAAAATGTTC
CAAAATCCTATCTTTCGAACCAATCACATGCGCTTGAGTCCCAAGAAAGA
GGCTACGGATCCTGAAGGTTTTTCACGTCCAAGACCAGCTGGATCGACTA
TCATTGAGCTGAACGGACCATATTGGAAAGAGCAGGGATTCGAACCGTGA
ACCCCTTGTTTCTGGAGCTGGAGCTTTAACCATTCGGCCATCGCTCCTAA
ACTTTTTCGTCTCGTTTCCTTTCTTTGAAAGAACCTTTCAATATTAATCC
TCAATCAATTAGCTCTAGAAAGGTGACGTTTTCGGTTTTCAATTTGCCAT
GACATAACATACCAATCCATAAATCTTTAATAAAATAAGTCTTCTCAATA
GATCTTATTGGAGTTTTTGATTTTTCCAAAAAAAGCGATGCATCGAGGGA
TTGTTTCGGGGGTATTATAATGTAAATCTCTTAAGACTTCCTCGAGGGAA
TTCTATTGTAATACCCCCAAAACAATCCCACAATGCATCGCTGTTTTAGA
AAAATCAAAAATTTCGATAAGGTCTATTCTACCTATTTTCCTGACCAAAA
CTCTCGTTGAAAAGATAAGCATAGGATAATATTATTATATTATATTATTC
TTTTCTTCTTCTACCAGGCATCAGAACGTCTCCTAGGGACATATGGTATT
CCAACATCGAACACGTTATTTCTTTCCAATGCTCCCTGTGGAGTGATCAA
GATTCGTTTCAAGGAGAACGAAGAACGTGGACAGGTCTACCAAGGTGCTA
AGGTGATGCGACGAGACAAGCAAAAAAATTCTAAAATCTACAGTGAAGTC
TCCATAACTCGAACCTTTATTACTCAAAAAGAGGAAAAGAAAAACATTTT
TTTGCTATATCAGCATAATGTAATACTATTATATCAGCATAATATAGCAA
TAGGCATAAACTGCCCTGATATGAACTATGTGCCTGTCTTGAAACGGGAA
CGCTTATGTAAAAATAAAACCTTTAAGCTGAATAAATCTACGTTTTTATT
TTCAGGTGTTCTTTACCAAGGTTCGTATGACGTCACTGGATAACATCGAC
ACTCAAAATACCCAAAACGACTGGTTATCGGTCAGTGAAATACAAGAACA
ATCCCAAAGCGAATATTTTCAAAGGCTTGAACGGTTTTTATAGAAGAAAA
AAAATATTTCTTTTCTACTGCGAATCGGCATGAAGTAAGTCATAGTTTCG
AGACGTTGATATCGTAATTTGACTCATTTTGGATGAATCTACTTTTGTGA
AAAATTTTGAGACAAAAAATGGCTCATGTTTTAAGTGATTCCATATCTTG
CAATTATCGGAGCTTTTAAAACTCCAATAAGATCTATTGAGACTACGTGA
TAATCTTGACTAAGACCATGAATTTAATATAGACACTGGATAAACAACGT
ATAAAACGGTGGAGAGCGAAGTATTGTCTTTCTTTTGTTTAAGAAAACAA
TCGAGGATCTAGCTTTGTCCGCAAAGGACAACTGTCATGGTGGCTCGAAG
CTCTCTGATTTTGAAAAATCTCATTTCTAAAAAATCTTTATCTTTTTGTA
CTTTTACTCGCCAAAAATTTGGAAGTAAATGCTAAAATACTTAACGGATA
CATTTATTAAATCTGGTGTGACAAAAACATCATCAGACAAGAAAAATCTA
ACTAAAGGCCTAAAATGACACAGAATTTTAAGTTGGCGATATCTTTCTAA
CATCTTTCTGAGAAGAGCTATGATTGACATACAATAGACTTGAGTGTCTT
GGCTTCACCGTGATATGAAAATATTTTTGAGGCTCGTGGTGGATCGTTGG
TCTTATTGAGGTTAAAATTTCTGGTGTCGACATTCGATTTTTCATACATA
GGATGTTTTTCGTATCTTTCTTGCAACTTGAAACGTCATAAAGACACATA
ATTAGCAATTATTTTGATGTGTTCACCTTTCTAAGGAAAAATTAATTTTC
ATTTGGGAATTGAAATGACTGTGTTAAGATGAAAAATCGTTTAATGAAGG
AAGGAGAGTGAACAATAATGTCATTACTGCGGACAAGGCTAGAACATGAG
AAATCAATGAAAATATAACTCATTGTTTATCCAGTGTCTATAATAAATTC
TTAGAGATAATTTTTATGAGAAGACACCCAATCTGTATGTTTTATTTCCT
CACTTATGGCTAGCTTTTCAGTAAGTTTACTCAACTTTCAAATCAATCTC
TGGCTTATGATCAAATCTTGAAAATATGATAAAATTGGGCCAAATCAGTG
GTCAGAAAAACGATTTGAATGTTGATTGAACTTTTTAAAAGATCTAAGGG
TATGCGTAACAGTATTTCTGAATTTTTACCTTATATGACAAGGAACTGTG
CTGAAGTGCTGAATTTCATTCAAAGAAAGACAAACTGTATCACATTAAGG
GTTGGTACAAGAAAAGTTCCGCAGCCTCTTTTTACGTATGTCATTTGTTA
TACGGTTTTCTTTTCGTCGTTCGATCATCTCTTGATAGGTCTTGAAAATT
TCATCGAAACTTACGAATCTGAGATTTCTCTCACGTGCGCGAATGGAGTT
TAATTATGGTTTTCGATTAATTTTACCCTTCCCGTAAAAAGGTTTCGGTG
CCCTTTAGTTTTTCATATTGTAAGAATCCTCATATCTTGAGGATTTTCCT
CTTTCTAAAAGCAATTGAAGATTATAAAAATGTAAATATTATTATCTTAA
AATTTTTTGTAATGAAGAAGAGTTAAGAATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073549-exon-scaffold_94-1575043694:454905..455333 | TCONS_00073549-exon-scaffold_94-1575043694:454905..455333 | Clytia hemisphaerica | exon |
| TCONS_00073549-exon-scaffold_94-1575043694:452870..453070 | TCONS_00073549-exon-scaffold_94-1575043694:452870..453070 | Clytia hemisphaerica | exon |
| TCONS_00073549-exon-scaffold_94-1575043694:451832..451966 | TCONS_00073549-exon-scaffold_94-1575043694:451832..451966 | Clytia hemisphaerica | exon |
| TCONS_00073549-exon-scaffold_94-1575043694:449851..451578 | TCONS_00073549-exon-scaffold_94-1575043694:449851..451578 | Clytia hemisphaerica | exon |
| TCONS_00073549-exon-scaffold_94-1510915933:454905..455333 | TCONS_00073549-exon-scaffold_94-1510915933:454905..455333 | Clytia hemisphaerica | exon |
| TCONS_00073549-exon-scaffold_94-1510915933:452870..453070 | TCONS_00073549-exon-scaffold_94-1510915933:452870..453070 | Clytia hemisphaerica | exon |
| TCONS_00073549-exon-scaffold_94-1510915933:451832..451966 | TCONS_00073549-exon-scaffold_94-1510915933:451832..451966 | Clytia hemisphaerica | exon |
| TCONS_00073549-exon-scaffold_94-1510915933:449851..451578 | TCONS_00073549-exon-scaffold_94-1510915933:449851..451578 | Clytia hemisphaerica | exon |
| TCONS_00073549-exon-scaffold_94-1491911889:454905..455333 | TCONS_00073549-exon-scaffold_94-1491911889:454905..455333 | Clytia hemisphaerica | exon |
| TCONS_00073549-exon-scaffold_94-1491911889:452870..453070 | TCONS_00073549-exon-scaffold_94-1491911889:452870..453070 | Clytia hemisphaerica | exon |
| TCONS_00073549-exon-scaffold_94-1491911889:451832..451966 | TCONS_00073549-exon-scaffold_94-1491911889:451832..451966 | Clytia hemisphaerica | exon |
| TCONS_00073549-exon-scaffold_94-1491911889:449851..451578 | TCONS_00073549-exon-scaffold_94-1491911889:449851..451578 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_94 | supercontig | scaffold_94:449851..455333 - |
Blast
The following BLAST results are available for this feature:
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