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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073534 ID=TCONS_00073534|Name=TCONS_00073534|organism=Clytia hemisphaerica|type=transcript|length=1300bp CCTACATATAAATTGAACTAACTTGTTTCACATATCTTATTAAAGACGGA ACTGGCATACTGACTATCAAAATATAAGACTTGTATTGATAATATcttat ttgaaatcaaaatgaatgttgttgtttttatttttgggcTTTTGGCGCTT TGTGTATTTTGGGTAAATGGGCGCCCTGTTATTGAGAAATCACCGCTCGA TGCTTTTGCAGAGGAGAACGCTCGTAATGCTCTATTGTTCCCATACCTCA TCAAGAAAAAGATCAAGCGATGTGGAACGGTCACACAGTCGAAAAATTAC AACCAAGGCGTTGCTAAGAATCGTAAAAGAAGATTTATCCCGCAAGGAAC TGCTTGGAATAAAAAGttATTAGCCTGGAGAATCGACGAAAATACAAATG ACCTACCCAACTTTTTAACACGTTTTATCATCCGTAAAGCATTCAACATT TGGTCGAAATGGATTCCGATAACTttccaagaaaaaaataaaggcaAAGT CGATATTTCGATCAGATTTGTTAAGAAAATTCACAGACCCTGTCAAGTAG CTTTCACTGGACAAGATGGTATCGTAGCGCATGCGTATTATCCTTACCAA GGACAAgACATTGCCGGAGACATTCACTTCAACGATGACCAAAGGTTCAC CCACAATGCTGAACCTTCAAACAGAGGGGGTATGGGAACTAATCTAGCAT GGTCTGCCCTCCATGAGATAGGACACTCTTTAGGGCTTGAACATTCGAAC ATATACGGCGCAGTAATGTCACCCTTTTACACCTCATTCTATCATCCTGG AGTTGATCTAGCCTTGACTAATGACGATATCAAAGGTGTCCAGGCCATTT ATGGTAAATCAACACACAGCAAAACAAATCGAGTCGATTCTTTTCTTGTA AAATGAGTAGTTGGTGTGAAAAAATGAATGGAGGAGAAAAAGGAAGCTGA TTTCTTAGCTGATTTTAATGCTATGCGCGTTTACCAGTGTGATGCATGCA CAACAAGATAGTTTAACAACGAGAAGAAGATAATCATGATGTGGTTCCTA GAACGAGTGAAAGAGAAAAGAAATGGATAGTTCcgagctggcacacaacg ttgtttcaacgtttatctaacgttcacaacgtccatataacgttaaatga acgttgaaacaacgttgtgtgccagctgggtcttTAACGTAGTAGAATAT AGAACATAGAACGTTGCTATGTCAATCTATGAACCCGACATCCAATTCCG TGAAATACATAAAAAGGTGACAAACAAACAATACACCTTATCAACCGTAG Run BLAST on NCBI protein sequence of TCONS_00073534-protein >TCONS_00073534-protein ID=TCONS_00073534-protein|Name=TCONS_00073534-protein|organism=Clytia hemisphaerica|type=polypeptide|length=264bp
MNVVVFIFGLLALCVFWVNGRPVIEKSPLDAFAEENARNALLFPYLIKKK IKRCGTVTQSKNYNQGVAKNRKRRFIPQGTAWNKKLLAWRIDENTNDLPN FLTRFIIRKAFNIWSKWIPITFQEKNKGKVDISIRFVKKIHRPCQVAFTG QDGIVAHAYYPYQGQDIAGDIHFNDDQRFTHNAEPSNRGGMGTNLAWSAL HEIGHSLGLEHSNIYGAVMSPFYTSFYHPGVDLALTNDDIKGVQAIYGKS THSKTNRVDSFLVK Run BLAST on NCBI transcript from alignment at scaffold_94:403661..416521+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073534 ID=TCONS_00073534|Name=TCONS_00073534|organism=Clytia hemisphaerica|type=transcript|length=12861bp|location=Sequence derived from alignment at scaffold_94:403661..416521+ (Clytia hemisphaerica) CCTACATATAAATTGAACTAACTTGTTTCACATATCTTATTAAAGACGGA
ACTGGCATACTGACTATCAAAATATAAGACTTGTATTGATAATATcttat
ttgaaatcaaaatgaatgttgttgtttttatttttgggcTTTTGGCGCTT
TGTGTATTTTGGGTAAATGGGCGCCCTGTTATTGAGAAATCACCGCTCGA
TGCTTTTGCAGAGGAGGTAAGGCAATTTCCGGTATGTTGGGTTAAAGGTT
ATTTCAAAGAGTGCGGTTTGATAACCCGTTGTTAATCTTTGTTACTTCat
atttttagaaactttttttatgaaactTTTACAACCTGCTATAGTTTTAG
GTGTATAaagtaaaaaagttttgaatccCCTCAAGTGTTGCCGAAGAAGC
TTGAGTTACATTTTTAATTCCCCCTGAATATCAGAATCTGGCGTAAATAT
TTAAatgattttctcgagatttacTTCTGGCTTTCCCGCGATTCCCCGAA
AACTCCAGTCCTTATCCGCCCAAGgaaagaattattttaaagtGTTAAGA
ATTGATTTCGGAAGTTTTCAAACATTAATTATCTTGACCGTTCTTATCAA
TTTAGAAAGATCACAAATATGTGGTAATACTTAGATCTCAGTACAGTTAT
AAAAGCAATAATACGTTCTAaggtagactagagtctacttctggctgaac
tttgctttttgataatttttgatgacgctgagtccagtgaagtagactta
GGAGCGTTTGgtgaggtcgccattttgaaaaagaatgtttgaaatccaaa
taacaaaaaatctattggagttgaaagatgtaataaaaaatgagaaacaa
atatcaataacagatttgcaatcccttattctcaaataaaaaaattgtat
cGTACTGATTTTACCTTccaaaacaactaaaatctgacggactgttttac
agtccgcctaagcaaaagcatattaccatatactaccgggccacttaatt
gcgccatccagtctatcaaaaagctttaagtggaccccgggctagttTTT
AGGTAGTGTTGCATTTTAATGTGAGAATATCATGTGTAATGACATTGCTT
TTAGATCACGATTAAAAAGCTATCAATTGTTTGAAACATACAATTACTGG
TACTCAGTAGTAGCTCAATCTCATTAAGTGAAGTTCCTTATAATAATCGA
GCTTTAAATTGACATGAAAATATAGCCAAGGTCAATTATTTTCCTATTAG
TAAATAACCGCAAATGCTTTTATAAAGTAATCATGCTCGATGGAGACCGA
AATTATTATGCGTATTCAAATAGTGTGTGCGTTTACACTGGAAAGTCTCC
TTAATTATAAGTCCATCAAAAGCCAAAGAAATAaatttatgatggatgaa
tacactggtttattacagttcaCGAGATATATTATAACATGTTAATTGAT
TTTGCTCAAGGCTTCTCATTGGCTAATTTTCATTGATATTTCCATAAAGT
CGCctttgattggttgatattgataATCATACATCACTCGAAATCCGTAA
ACATATTTCTTGTAATATTTTACTCGATAACTTCATTCGACTCTTCGTTA
TGTATACGCTATCATAAAggaaaatcctcaaaactcgtCATCTTGACTGG
GGTAAGAATGATTGAAATAATGTTAAAACGCTCTGAGAGTCTCATcaaga
tttatcaaaatttcgcattttaaaagttaaaagttaCTGTAGTCAAAAAT
ATCACGCCCGTTAAATCTGCAGTTTTAAAAGAACTAAacattaagggctc
tgaccatagtgaatttttcataattgccgtgtttaaaatgtgttttctga
ctgatgtaaccaacaaaactatggcatgttatacattttctgttagacaa
actattcctgaatctgaaaattcaaaaattgcattgaaaaaatttgatga
agaagaaaatgaagacttttgcgatgaagagtatttcaactttgaagagc
ttagtttcggcgaagaaactcgtccgaaaggacgaggaaaattcgaaaca
aaaaaatcgcgagtgcaattttcgaattgtacgagttattatgtgattac
gagctaatcgcacaatgggtttcactactttttcccagttatgaaagtaa
attacactgaaagttttatatttttctcttctctctatGCCGTctctatg
tttttcttttattgttgtttatagattttctttctcacaaaatgaatttc
gaatgcaattaaaacgttcgatgaaaaaaaaatgtgagaaaaaacattaa
aatcaattttataaacattggcgctgcatcgaagagtgtgattaacgatt
tattgctctctacaggatgcaattaacgattaattgctctctttgagggc
gcgacaaataagaaaaaataacccatcgtgcgattaagttcttaattact
tttaaggggtttgattaaaaagcaatttataaaggcaattctttgttaaa
agtgttaaagaatctaaaacataacttttatgttcagatactaaaatcaa
ttttctgactatggtcagagcctttAAATTAATGTTCGCAAAGAAAATGA
ATCTTATCGTAATTTCGTAGTTTAGTTTCTTATATCGCAAAAAAATCACC
TGTGCTGATGTTTATGTATGTCAATTGACTCAGAAATTCTCGGTTCCCCT
GAGGTCTATTTAAGACAGCATTGCCAAAGCATGAATCATATCCAGAGAGA
ATCGAAGTCAGGTTGTAAATAACAATTATCAACTATGTATGAAACTTCTG
ATATTTGAAATATGCCTTgtattcaataaaataaataccaaatttatttt
caattatcGTGAGTGGTAATTAAAATTATTGTCTGCATTCAACAATAACA
CTTCACGGGGCTTATTTTTTGTTAATGCGTCACCGCATTACTCTCGTACA
AAATGGaggaaaaaaattgttatttacACCACCGGCTGTGTTTTACTATA
AGACAAATATCTTAAGGCCTGGCATTCCTTAATTTTTATAGGAAAATCAG
GAAAATgttttacttacttacttgtttttaattttataagaacatagtAC
ATAAgaacaaaatggtgaaaataagaacatacacgtttttttttatataa
ggaacacgtttataaggaactcgagcctgaaaatggtccaaaaactaagg
aattgttaaggaactgctcaggctgagaataagaaaacaagttttaagga
acagtaagagatggttatccaaacttagcagctatgtaaataAGGAACTC
GATAAGGAACTTTGAtcctgaaattctctgtaaaaataaggaactccagg
ctcagagcaaagttaaggttccttataaaaaaaaacgtgtatgctaagaa
catctttaggcttaaatctcaaaaagttaagaacatcagaaTATATTAAG
AATCATCAGCGTAAGATTTGGCAACTGAATCTAAGAATGCcaaattttca
gatattttaAAGCATTTTGACCAATAATTGGCTAatccgaggggtaaatc
acttcgaaaaagcgtacgaaatgatttttgatttttgttttttttgtgat
tttttgatttttttgtgatttctttttgattttttgatttttttctgtga
tttttttgtgatttctttttgattttttgattttttNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNtgatttttttgtgatttttttgtgattttttgattttt
ctgtgatttttttgtgattttttgatttttctgtgatttttttgtgattt
tttgattttttttttatttttttgtgattttttgatttttttgtgatttt
tttgtgatttctgattttttgcatgatttttttgtgatttttctaagaag
tgtacgagattttttcgagtaatttacccctcgGGCTAATCTGCCACCTT
CGCTCAAAACTTTTACGCAaagggcccccagcggtttgagTGAATGCGTG
AACAGTGcgtgaaaatatttaaaaagctgCGTAAATGCGTGAATAGACCT
tagagttttttgatttttctaaaaaagcgatgaattgtgggattgtttcg
agtgtgttacaatagaaatctcttaggaattcctcaatggaattctattg
taatacaatcgaaacaatcccacaatgcatcgtttttttagaaaaatcaa
aaactccgataaggtctattggaaaactttgcgtgaacagagtttgcgtg
aatttcgtgAATTTGGAGATAACAATCTGCTCGGGAATGCCCGTCTTATT
TCTTATGAGATGGACAAAATAATAAATAGTGAAAATtagaatattaagaa
catttttaagcttaaactCAAAGAGCTagaaacatccgaaggcttcgtaA
AATTTGGACGTTCTTAAAAACAACCATATATGcctttaaaaagttttatg
aggaaattggccaaaaaataaaGCATATGCCAAAATACCACCATCATTGA
ATTTTGCAATTTGTTCTGAAcctaaaaatgtaattttttagaTTGATTAC
TAATGATTACCTAGAAAAAACTTTTacagaaataaaaaacattttcttga
ggtGTATTACATGCTAGATTTAAGCTGGGCTTTGATTCTAGCCTAAGAAT
ACCACAATAATATTTAAGGttgatttttctcaaaagtttaGAATATTCGt
gataaaatggaaaaaacaccattcttataaaaaaaagcgtgtaattaaGT
TAGTCAGGTTTAATTTCTAAAAGATGAAGAATTGTCAGATCATTTGATAA
TCTATTTAAATTAAGTATCGGCACGCAATGTTTCCTCCCGCGgagaaaat
acttaaataacCAACATACTTAGTCGAGACAAGCTTAGCGTAATCATTTT
TTCTTATCAATAGCATACCGAGTTGGTTCAAAAAATGTCAGTTCAACGCT
CGTCTTGCAAACGTTGGCAATATACTTGCATCTTTAGAATTGCACTTGAA
GTAAAGACAAAGATCAAACAAAGCCATTATTACAAATATAAtccaaaaac
attcaaaaatacaCTGACCACCTcactcgggtgaaacaaggcatgtccca
aatatattttgcgtgacgcacaccgcttcccattattcattaactttcat
atatagctcaaaagaatcgtatCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTAcatcaag
ccaatctcaagatatcggccaaaaactgattttgacgttataaaatacat
cgaaaaaacacgtcaaaaagacaatttaaatgacgtcattattaaaaaaa
agctcaggatctgaggatccaaaagttcaaaaatagtccaataagactca
gaatatagcctggaagtctgccaacccctcccaaattgaaatattcgata
aaattaaaaagacagccaaaaatcgactttctcgccagaactttaaatct
tgaaaaacgttaaaataaccaaaattctcaatatattatgaccttaattg
tacaaaagatgtcacggaaccccaggcttggcccctactataaagtgcac
tttgggaagcttgtaaaatatacccttaagggcccCACTTACGgtaattt
atacaatttttCATCATTATCTTTGCAGAACGCTCGTAATGCTCTATTGT
TCCCATACCTCATCAAGAAAAAGATCAAGCGATGTGGAACGGTCACACAG
TCGAAAAATTACAACCAAGGCGTTGCTAAGAATCGTAAAAGAAGATTTAT
CCCGCAAGGAACTGCTTGGAATAAAAAGGTTAGCCAGTTAGACCTAAATT
AAGGTAAAGTTTGATTAACCTTAATCTTTTTACTATCTATTAATGAAAGC
ATGTCTGTGATTCAAACCAAAAGTTCGCTCAACTGGAAAGTCTcgaaata
ttttcattaatCGGAATACTTCTATATTTATATTTAATTCGAAAACAAAA
TTCTTTGTTTCTCGAAGATCCAATTAGAGAGAGTTAGCAATTTTATCAAA
GACCCGGTTAaaacaatgggcttttccagaaaaaaaccgtatacctcctg
ttgaggagtccatttccgttccaacggaGTAAGGTTTGATGTGTGGCGGA
ATTACATaaggagatacaaaaatctgtcaaaataaTAAGTGGAATTTTAT
GGTGGTAGCCTTTTAAAttctactaaaattcagaatttcaAAGGGGTGTA
AACCTGAAACTGTCTGGAATTCCAGGGgattacagcatttccagccacag
agggatgAACCTCCTCAAATTTATTGTGAAATAGCTGGAAAAAGTTCACA
AACAAGCCTTATGTTATGTCTCTCTTAGTAAATAATTAATTGAACCATGT
ATCAAGCCACGCAAAAAAATAACCCTGGAATGCCTCCAATTTTCGTCCCT
GGAATCACCCCATACTCATTTTAGTAATcaaccaacttttttttagttAT
TAGCCTGGAGAATCGACGAAAATACAAATGACCTACCCAACTTTTTAACA
CGTTTTATCATCCGTAAAGCATTCAACATTTGGTCGAAATGGATTCCGAT
AACTttccaagaaaaaaataaaggcaAAGTCGATATTTCGATCAGATTTG
TTAAGAAAATTCACAGACCCTGTCAAGTAGCTTTCACTGGACAAGATGGT
ATCGTAGCGCATGCGTATTATCCTTACCAAGGACAAggttggtatttttt
tctttgataagTATAGAAGAATTGTGGATGACGTTGGGAATTTATGATAG
ATTTTCAAATGTTATAATCGGTTAAAATCCAGTCCCTCAAAATCCAAATT
AAATCccaattttcctgtttttctcAAAGGACTTGATCATTGTTTCTTTT
TGCGTTCTCACagaaagcaaaaaaagaaaaagaaataggaACCGAACCGG
GCCACTTAACAGGTCCACCCaatctatcaaaaagctatgaTTAGTCTCCG
GGCTAGGTTGGATTTgtttagcaaaaaaattaaaaccataTTAcacctag
tctgaatcgcagacctctatagatatgaTTGCCCTCTCTCTCCACCTCCC
TAGGCTGGATTTGTCTTGTTTTTAGTTTCATCAATTTGTTTGTATTTCTG
TTTTCCAGACATTGCCGGAGACATTCACTTCAACGATGACCAAAGGTTCA
CCCACAATGCTGAACCTTCAAACAGAGGGGGTATGGGAACTAATCTAGCA
TGGTCTGCCCTCCATGAGATAGGACACTCTTTAGGTGAGATTTGGTTGGT
TGTTATAATGCGTCTAATACAGTCATATGTGTCTTGTGTTATAGGATAAT
ACAACAATTGTTAcaggataatatcagtttgtcttttccaatattttttc
atctttttctaCTCTGGCTGAACTGGTCATTTACAATCCcacacaaaata
tttgagacaaaaaggatttgcttttgaaattttaaacaccacaaataaTT
TTTAAGCGAGTTAAactagagttttaacatgacaCTTAAaacttacgacc
ttaggatctcaggagttaaaagctcaaaattgtttCGGGcaagattgggc
ttttccagaaaaagattttacacccgctgttgaggatatcaacttttaaa
aatatactaaaccccctggatatcctctcttataaagatgcttacccatt
ggatatcgtattttttacttgaaaagacactttacccctggatatccgct
cccttgcaGATAttaaaccccctggatatccacttttgagcaaaaatcgt
taaccccctggatatcctctcttataaagatgcttacccattggatatcg
tattttttacttgaaaagacactttacccctggatatccgctcccttgca
GATAttaaaccccctggatatccacttttgagcaaaaatcgTTAATCCCC
TGggtatccgatatcctcaacaggagGTGCACggactatttttggaaaag
cccattgtagCCTGACAATTCTGTCTTTGTCAATTTCTCGGTGAGGCGTT
GATCAGCCTGGATAAGAGTTCAAGGCTTTTTATCGCCTGTTCCAAATCTT
CTGTTCGTGActagatttttgtttttgttggaaagCTTTTAAGAAGAATT
ATCGAATTAAGGGTTGGTACTCCAGCATATACATATATATCTTTCACAAT
GGTGTATTGTTCTGTGATTATAAAGACCTAAAGTGCAGTTTTTTTATTAG
TAAATcgtaatcgttttttttttacccaCGCTATTTTTCCTcccttttgt
tgtttttcttttttgaaaaacatatttaCTTAAATTTAGACTGCTCGAAT
TAATGGCCTGTGACATATTTCAGATTTATGCAACATAACATGTTATGGTT
CCCTAACCATACCATAACTTAGGGTCATCTGCTTTAactctttttttgtt
tctactAGATGTGTGGAAACCATGATTGAAAGAATTACTTTTAAATACAA
TAACATTGTTTCCACATTATAGAAAAGGAGAGCGCACATttaagcaattc
cattggttaATTATGGGTCTACTACGATTTTACCTAAAAAgtgatttcaa
aaattatttNTttaagcaattccattggttaGTTATGGGTCTACTACGAT
TTTACCTAAAAAgtgatttcaaaaattatttaacaAATTTAAAGACCTCT
AGAAATTATTTTAACCTCGAATCAACTTTTGTTTTCTATATCTTAGGGCT
TGAACATTCGAACATATACGGCGCAGTAATGTCACCCTTTTACACCTCAT
TCTATCATCCTGGAGTTGATCTAGCCTTGACTAATGACGATATCAAAGGT
GTCCAGGCCATTTATGGTATGATTCTTTCTCTCATCATGTTCGAAATGAG
TCACGTGGGTTTTCTGGACCAATAGGCTTCTTCCTAATAGTAGTATTATT
ATAAATCTAAGATTTATCAAAATGGTTTGTTAAAGAGCGCTCTCTTTCCA
GATTGCTTATGATTCTGAGCCGTGCCTGATTTTTCATGTTCGAGTTTTCT
CGTTCACAAATGAAGGTCAAGGACACAACCGATCTCGCAACCGATCAGAC
GAACCCAAAGGCTAAGAGGCTAAAGTAAGGCTAGGGCTGAATCTCCTATg
tgtaggatttgaagccaaatATTTACTACCTAGTGGCATGAGccactttt
ttttactataaaccctcaaaatacttacaaaattcgaaaatgttaaccgg
aaaaaaaaaagtGCTAGATTTAATTCGTCAGAAAGGAAGAGCAAATTTTA
AGATGTTAGTTTCGCTTACGTCTCTAGCCATCAAATATAACTCATTGAAA
AAGCTTCTTACAGAAATTGCATAATACAATGagaaaatgacattttgaaG
CAGAATTAAACTTCAGGTTGTGCTTTCAAATTTgctcaatacaccttttt
gaccgtagtcgcgcggtcaggtaCGTGCCACTTTATCATTTAATTACACC
CCTGAAACTCAATCCAATCcttatttatacttttttctaaTGTCTTTAGG
TGCacaaaaaagactgggacggttttagggcggtaaaacagacaaaaaat
gtcCGCGCGGCATTTGGCggttacggtcgaaaaggtgtattttacttttt
ctacACAGGCAATTTACCTTTTTATCCTGTGagattaatattttcaaaac
ttacGCACGTGAAAGCACTTTCTAAGTAAGATTTACATGAAATTGAATTG
TGTGAATTCTTAAATTCCATAGAGACCTTTCACAAGCATGCCCTGCAATG
CTCAAAATTTAAGCGCTCCCCTCATCCCATTTTCCCAAATTAGCATATTT
GATAGGATTTTTGTGCATCTGTTACGTGCTAATTTCTATTAAATTTAAAG
GAGTAAAATGCACAGATTTGTGCAGATTTCGCCTCAAAAAAGACGGtgaa
aaagattatttttttgtcaTCATTAAATTGACTtgggaattcaaaaaaaa
ttcacaacaGAGTACTTGACCAGAAAAAGttgattacacgcttttttata
agaatggtgttttttcatttcatcatcaTGGATAGTCtgaactttttggg
gaaaatcattatcaaaatttttatacGGTATATTGTTAGGTTATATTCCA
ACCACCCAGCCTAATCTagcatgtaatacatacctcAAGCAAATATTTGG
CAAGAACTTTTAGCCTTGCTGGGGAATAATTGgaattttacaaataaaat
gctcAAAAGATCctgtgccgtaggaagcattttcttattgggggggctga
agtttagtgacaccgcgagggccaaccatggtttgacCGGGGGGGGGGGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGtttggcccgggggggg
ggattttgaaaatctaggctctagattgcttgaaaatgcactcaaaacaa
aatgctttcaagaaaaaaccagaaaaactttgcattttgcaaaataacca
tttttgaaaagattattGGGGACATAGCCTCCCCCctcccagttgctacg
gcactgagatcggtattcttaggttcagaTGCGAAATCCCATGATGGTGT
CATTCCAGAGAAATTGAAAGGGATAGAAAAAGCGCTTCTCTGATTATCCA
ATAAAGTGTTCTGATCGTTTCTATTGAAAACTCGATTGTTTCAGCTTTAA
TTAGGTAgttagaaaaagttaagaaaaaacgGCTGATATCATGCCCCTGA
TATAAGGTTCTCGCATAATTTGACCtgaaacaaaaaactttcgtcACACT
ACGCTGattatacacattttttaaagcGAAAACTTGAAATCCAAGAAGTC
CACTAACTGAAAACAAACTTATCCCTTGAGGGCAAAGGGCCTGGTACATG
ATGAGCCATATagttccattgttttcaagaagctgttctACTATCTCTTT
CCATTTTTCTGGTTATTCTtagcattttttttgctttagaataatttttt
tggcaaatttcatcatgaatattcttataaagtatatcatttttttaaca
aaagttTGTACTACAGTGACGTAGAAAAATGTCGAAAACACGAATCCTAA
TAATGCTCTACAGACACTTTTGTTTATAAGttgaattgtttttattgata
ttgCAAAGCTATTTCTTTTCTTGTAACCTCTTTGCGCAATTCGGTGTTAA
AAAtcacttcttctttttctaaatCCTGTGGTCACTTCACAATAAAAATC
TCCTTTCCATAAAGAAAAccacaaaaagtcaaaaacaggAACTTCACAAC
ataaacatgtttttattttttccttttccgACCTTTCCGTCAATTTAGAA
AGTAAATTGTTGCAAAACATTTGAACAGCTCATTGTGACCCGATGAAAGC
TAGAACCCAACTGAATAATTCGGCCAAAATACTTCCTtggtgaaaaatat
tcttaatttcaaccctttttgaaaaagtgcGCTATGGTTTTAATCCAATT
TGAAATGGAatttaaaaattgtattttaaaacCATCTCTTCTTCTGAAGT
TTTTGAGCTAGACACAATAGATTTTCATCCTCATTGAGTatgtagacgat
cctatcgtctacacaggCTCACTAAAAAGGGGCATAATTTAGGAGGCGAA
TAAACGATGGTTAGCCCTGGGCGgagagtaagcagtggcggaggaggtgt
ttacagtgtagtctgttccaaactctaccgctGCTTTCTTTTTCTAAACC
ACCCTGACGCCCTGATGTTTATTGACCCactaacggacgatagcatcgtc
tacatCGAGTGAAAAAGTTCCACCATTAGCGTAGTGGGTTGACCGAAATC
GAGGCAAACAGCGGAGGCAATCTTAAATTAGTAATTTGGCACCctattaa
aagtaaaatatcGTGGGAAGCTAGCacaaaagtttttgactttttttatc
tttttgtctGAAATCTGCTAATTCTTAGATATAAAAAAGCAGAGAGTGGC
CGGAATAAGTAGCCAGAGGTGCTTTTTTGCGCTCTTTGTCCTTCAGCGCC
TCAAAATATCGGCCACTGGTCCCCTGCCCCAATGCTACTGAGTTCTACCT
GGGTACTGAGAAAGTTGTTTATACAGCAGTTTTTTTTACCACATCTTCTA
TTGCACCATTTCAGGTAAATCAACACACAGCAAAACAAATCGAGTCGATT
CTTTTCTTGTAAAATGAGTAGTTGGTGTGAAAAAATGAATGGAGGAGAAA
AAGGAAGCTGATTTCTTAGCTGATTTTAATGCTATGCGCGTTTACCAGTG
TGATGCATGCACAACAAGATAGTTTAACAACGAGAAGAAGATAATCATGA
TGTGGTTCCTAGAACGAGTGAAAGAGAAAAGAAATGGATAGTTCcgagct
ggcacacaacgttgtttcaacgtttatctaacgttcacaacgtccatata
acgttaaatgaacgttgaaacaacgttgtgtgccagctgggtcttTAACG
TAGTAGAATATAGAACATAGAACGTTGCTATGTCAATCTATGAACCCGAC
ATCCAATTCCGTGAAATACATAAAAAGGTGACAAACAAACAATACACCTT
ATCAACCGTAG Coding sequence (CDS) from alignment at scaffold_94:403661..416521+ >TCONS_00073534 ID=TCONS_00073534|Name=TCONS_00073534|organism=Clytia hemisphaerica|type=CDS|length=4770bp|location=Sequence derived from alignment at scaffold_94:403661..416521+ (Clytia hemisphaerica) atgaatgttgttgtttttatttttgggcTTTTGGCGCTTTGTGTATTTTG GGTAAATGGGCGCCCTGTTATTGAGAAATCACCGCTCGATGCTTTTGCAG AGGAGAACGCTCGTAATGCTCTATTGTTCCCATACCTCATCAAGAAAAAG ATCAAGCGATGTGGAACGGTCACACAGTCGAAAAATTACAACCAAGGCGT TGCTAAGAATCGTAAAAGAAGATTTATCCCGCAAGGAACTGCTTGGAATA AAAAGttATTAGCCTGGAGAATCGACGAAAATACAAATGACCTACCCAAC TTTTTAACACGTTTTATCATCCGTAAAGCATTCAACATTTGGTCGAAATG GATTCCGATAACTttccaagaaaaaaataaaggcaAAGTCGATATTTCGA TCAGATTTGTTAAGAAAATTCACAGACCCTGTCAAGTAGCTTTCACTGGA CAAGATGGTATCGTAGCGCATGCGTATTATCCTTACCAAGGACAAgACAT TGCCGGAGACATTCACTTCAACGATGACCAAAGGTTCACCCACAATGCTG AACCTTCAAACAGAGGGGGTATGGGAACTAATCTAGCATGGTCTGCCCTC CATGAGATAGGACACTCTTTAGGGCTTGAACATTCGAACATATACGGCGC AGTAATGTCACCCTTTTACACCTCATTCTATCATCCTGGAGTTGATCTAG CCTTGACTAATGACGATATCAAAGGTGTCCAGGCCATTTATGGTAAATCA ACACACAGCAAAACAAATCGAGTCGATTCTTTTCTTGTAAAATGAatgaa tgttgttgtttttatttttgggcTTTTGGCGCTTTGTGTATTTTGGGTAA ATGGGCGCCCTGTTATTGAGAAATCACCGCTCGATGCTTTTGCAGAGGAG AACGCTCGTAATGCTCTATTGTTCCCATACCTCATCAAGAAAAAGATCAA GCGATGTGGAACGGTCACACAGTCGAAAAATTACAACCAAGGCGTTGCTA AGAATCGTAAAAGAAGATTTATCCCGCAAGGAACTGCTTGGAATAAAAAG ttATTAGCCTGGAGAATCGACGAAAATACAAATGACCTACCCAACTTTTT AACACGTTTTATCATCCGTAAAGCATTCAACATTTGGTCGAAATGGATTC CGATAACTttccaagaaaaaaataaaggcaAAGTCGATATTTCGATCAGA TTTGTTAAGAAAATTCACAGACCCTGTCAAGTAGCTTTCACTGGACAAGA TGGTATCGTAGCGCATGCGTATTATCCTTACCAAGGACAAgACATTGCCG GAGACATTCACTTCAACGATGACCAAAGGTTCACCCACAATGCTGAACCT TCAAACAGAGGGGGTATGGGAACTAATCTAGCATGGTCTGCCCTCCATGA GATAGGACACTCTTTAGGGCTTGAACATTCGAACATATACGGCGCAGTAA TGTCACCCTTTTACACCTCATTCTATCATCCTGGAGTTGATCTAGCCTTG ACTAATGACGATATCAAAGGTGTCCAGGCCATTTATGGTAAATCAACACA CAGCAAAACAAATCGAGTCGATTCTTTTCTTGTAAAATGAatgaatgttg ttgtttttatttttgggcTTTTGGCGCTTTGTGTATTTTGGGTAAATGGG CGCCCTGTTATTGAGAAATCACCGCTCGATGCTTTTGCAGAGGAGAACGC TCGTAATGCTCTATTGTTCCCATACCTCATCAAGAAAAAGATCAAGCGAT GTGGAACGGTCACACAGTCGAAAAATTACAACCAAGGCGTTGCTAAGAAT CGTAAAAGAAGATTTATCCCGCAAGGAACTGCTTGGAATAAAAAGttATT AGCCTGGAGAATCGACGAAAATACAAATGACCTACCCAACTTTTTAACAC GTTTTATCATCCGTAAAGCATTCAACATTTGGTCGAAATGGATTCCGATA ACTttccaagaaaaaaataaaggcaAAGTCGATATTTCGATCAGATTTGT TAAGAAAATTCACAGACCCTGTCAAGTAGCTTTCACTGGACAAGATGGTA TCGTAGCGCATGCGTATTATCCTTACCAAGGACAAgACATTGCCGGAGAC ATTCACTTCAACGATGACCAAAGGTTCACCCACAATGCTGAACCTTCAAA CAGAGGGGGTATGGGAACTAATCTAGCATGGTCTGCCCTCCATGAGATAG GACACTCTTTAGGGCTTGAACATTCGAACATATACGGCGCAGTAATGTCA CCCTTTTACACCTCATTCTATCATCCTGGAGTTGATCTAGCCTTGACTAA TGACGATATCAAAGGTGTCCAGGCCATTTATGGTAAATCAACACACAGCA AAACAAATCGAGTCGATTCTTTTCTTGTAAAATGAatgaatgttgttgtt tttatttttgggcTTTTGGCGCTTTGTGTATTTTGGGTAAATGGGCGCCC TGTTATTGAGAAATCACCGCTCGATGCTTTTGCAGAGGAGAACGCTCGTA ATGCTCTATTGTTCCCATACCTCATCAAGAAAAAGATCAAGCGATGTGGA ACGGTCACACAGTCGAAAAATTACAACCAAGGCGTTGCTAAGAATCGTAA AAGAAGATTTATCCCGCAAGGAACTGCTTGGAATAAAAAGttATTAGCCT GGAGAATCGACGAAAATACAAATGACCTACCCAACTTTTTAACACGTTTT ATCATCCGTAAAGCATTCAACATTTGGTCGAAATGGATTCCGATAACTtt ccaagaaaaaaataaaggcaAAGTCGATATTTCGATCAGATTTGTTAAGA AAATTCACAGACCCTGTCAAGTAGCTTTCACTGGACAAGATGGTATCGTA GCGCATGCGTATTATCCTTACCAAGGACAAgACATTGCCGGAGACATTCA CTTCAACGATGACCAAAGGTTCACCCACAATGCTGAACCTTCAAACAGAG GGGGTATGGGAACTAATCTAGCATGGTCTGCCCTCCATGAGATAGGACAC TCTTTAGGGCTTGAACATTCGAACATATACGGCGCAGTAATGTCACCCTT TTACACCTCATTCTATCATCCTGGAGTTGATCTAGCCTTGACTAATGACG ATATCAAAGGTGTCCAGGCCATTTATGGTAAATCAACACACAGCAAAACA AATCGAGTCGATTCTTTTCTTGTAAAATGAatgaatgttgttgtttttat ttttgggcTTTTGGCGCTTTGTGTATTTTGGGTAAATGGGCGCCCTGTTA TTGAGAAATCACCGCTCGATGCTTTTGCAGAGGAGAACGCTCGTAATGCT CTATTGTTCCCATACCTCATCAAGAAAAAGATCAAGCGATGTGGAACGGT CACACAGTCGAAAAATTACAACCAAGGCGTTGCTAAGAATCGTAAAAGAA GATTTATCCCGCAAGGAACTGCTTGGAATAAAAAGttATTAGCCTGGAGA ATCGACGAAAATACAAATGACCTACCCAACTTTTTAACACGTTTTATCAT CCGTAAAGCATTCAACATTTGGTCGAAATGGATTCCGATAACTttccaag aaaaaaataaaggcaAAGTCGATATTTCGATCAGATTTGTTAAGAAAATT CACAGACCCTGTCAAGTAGCTTTCACTGGACAAGATGGTATCGTAGCGCA TGCGTATTATCCTTACCAAGGACAAgACATTGCCGGAGACATTCACTTCA ACGATGACCAAAGGTTCACCCACAATGCTGAACCTTCAAACAGAGGGGGT ATGGGAACTAATCTAGCATGGTCTGCCCTCCATGAGATAGGACACTCTTT AGGGCTTGAACATTCGAACATATACGGCGCAGTAATGTCACCCTTTTACA CCTCATTCTATCATCCTGGAGTTGATCTAGCCTTGACTAATGACGATATC AAAGGTGTCCAGGCCATTTATGGTAAATCAACACACAGCAAAACAAATCG AGTCGATTCTTTTCTTGTAAAATGAatgaatgttgttgtttttatttttg ggcTTTTGGCGCTTTGTGTATTTTGGGTAAATGGGCGCCCTGTTATTGAG AAATCACCGCTCGATGCTTTTGCAGAGGAGAACGCTCGTAATGCTCTATT GTTCCCATACCTCATCAAGAAAAAGATCAAGCGATGTGGAACGGTCACAC AGTCGAAAAATTACAACCAAGGCGTTGCTAAGAATCGTAAAAGAAGATTT ATCCCGCAAGGAACTGCTTGGAATAAAAAGttATTAGCCTGGAGAATCGA CGAAAATACAAATGACCTACCCAACTTTTTAACACGTTTTATCATCCGTA AAGCATTCAACATTTGGTCGAAATGGATTCCGATAACTttccaagaaaaa aataaaggcaAAGTCGATATTTCGATCAGATTTGTTAAGAAAATTCACAG ACCCTGTCAAGTAGCTTTCACTGGACAAGATGGTATCGTAGCGCATGCGT ATTATCCTTACCAAGGACAAgACATTGCCGGAGACATTCACTTCAACGAT GACCAAAGGTTCACCCACAATGCTGAACCTTCAAACAGAGGGGGTATGGG AACTAATCTAGCATGGTCTGCCCTCCATGAGATAGGACACTCTTTAGGGC TTGAACATTCGAACATATACGGCGCAGTAATGTCACCCTTTTACACCTCA TTCTATCATCCTGGAGTTGATCTAGCCTTGACTAATGACGATATCAAAGG TGTCCAGGCCATTTATGGTAAATCAACACACAGCAAAACAAATCGAGTCG ATTCTTTTCTTGTAAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00073534-exon-scaffold_94-1491911889:403661..403876 | TCONS_00073534-exon-scaffold_94-1491911889:403661..403876 | Clytia hemisphaerica | exon |
TCONS_00073534-exon-scaffold_94-1510915933:403661..403876 | TCONS_00073534-exon-scaffold_94-1510915933:403661..403876 | Clytia hemisphaerica | exon |
TCONS_00073534-exon-scaffold_94-1575043694:403661..403876 | TCONS_00073534-exon-scaffold_94-1575043694:403661..403876 | Clytia hemisphaerica | exon |
TCONS_00073534-exon-scaffold_94-1491911889:409539..409688 | TCONS_00073534-exon-scaffold_94-1491911889:409539..409688 | Clytia hemisphaerica | exon |
TCONS_00073534-exon-scaffold_94-1510915933:409539..409688 | TCONS_00073534-exon-scaffold_94-1510915933:409539..409688 | Clytia hemisphaerica | exon |
TCONS_00073534-exon-scaffold_94-1575043694:409539..409688 | TCONS_00073534-exon-scaffold_94-1575043694:409539..409688 | Clytia hemisphaerica | exon |
TCONS_00073534-exon-scaffold_94-1491911889:410357..410597 | TCONS_00073534-exon-scaffold_94-1491911889:410357..410597 | Clytia hemisphaerica | exon |
TCONS_00073534-exon-scaffold_94-1510915933:410357..410597 | TCONS_00073534-exon-scaffold_94-1510915933:410357..410597 | Clytia hemisphaerica | exon |
TCONS_00073534-exon-scaffold_94-1575043694:410357..410597 | TCONS_00073534-exon-scaffold_94-1575043694:410357..410597 | Clytia hemisphaerica | exon |
TCONS_00073534-exon-scaffold_94-1491911889:411019..411144 | TCONS_00073534-exon-scaffold_94-1491911889:411019..411144 | Clytia hemisphaerica | exon |
TCONS_00073534-exon-scaffold_94-1510915933:411019..411144 | TCONS_00073534-exon-scaffold_94-1510915933:411019..411144 | Clytia hemisphaerica | exon |
TCONS_00073534-exon-scaffold_94-1575043694:411019..411144 | TCONS_00073534-exon-scaffold_94-1575043694:411019..411144 | Clytia hemisphaerica | exon |
TCONS_00073534-exon-scaffold_94-1491911889:412607..412726 | TCONS_00073534-exon-scaffold_94-1491911889:412607..412726 | Clytia hemisphaerica | exon |
TCONS_00073534-exon-scaffold_94-1510915933:412607..412726 | TCONS_00073534-exon-scaffold_94-1510915933:412607..412726 | Clytia hemisphaerica | exon |
TCONS_00073534-exon-scaffold_94-1575043694:412607..412726 | TCONS_00073534-exon-scaffold_94-1575043694:412607..412726 | Clytia hemisphaerica | exon |
TCONS_00073534-exon-scaffold_94-1491911889:416075..416521 | TCONS_00073534-exon-scaffold_94-1491911889:416075..416521 | Clytia hemisphaerica | exon |
TCONS_00073534-exon-scaffold_94-1510915933:416075..416521 | TCONS_00073534-exon-scaffold_94-1510915933:416075..416521 | Clytia hemisphaerica | exon |
TCONS_00073534-exon-scaffold_94-1575043694:416075..416521 | TCONS_00073534-exon-scaffold_94-1575043694:416075..416521 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_94 | supercontig | scaffold_94:403661..416521 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0008270 | zinc ion binding |
GO:0004222 | metalloendopeptidase activity |
GO:0008237 | metallopeptidase activity |
Vocabulary: Biological Process
Term | Definition |
GO:0006508 | proteolysis |
Vocabulary: Cellular Component
Term | Definition |
GO:0031012 | extracellular matrix |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006508 |
proteolysis |
cellular_component |
GO:0031012 |
extracellular matrix |
molecular_function |
GO:0004222 |
metalloendopeptidase activity |
molecular_function |
GO:0008237 |
metallopeptidase activity |
molecular_function |
GO:0008270 |
zinc ion binding |
Blast
BLAST of TCONS_00073534 vs. Swiss-Prot (Human)
Match: MMP1 (Interstitial collagenase OS=Homo sapiens GN=MMP1 PE=1 SV=3) HSP 1 Score: 123.635 bits (309), Expect = 7.470e-31 Identity = 73/169 (43.20%), Postives = 95/169 (56.21%), Query Frame = 1
Query: 355 WNKKLLAWRIDENTNDLPNFLTRFIIRKAFNIWSKWIPITFQEKNKGKVDISIRFVKKIHRPCQVAFTGQDGIVAHAYYPYQGQDIAGDIHFNDDQRFTHNAEPSNRGGMGTNLAWSALHEIGHSLGLEHSNIYGAVMSPFYTSFYHPGVDLALTNDDIKGVQAIYGKS 861
W + L +RI+ T DLP I KAF +WS P+TF + ++G+ DI I FV+ HR F G G +AHA+ P G I GD HF++D+R+T+N NL A HE+GHSLGL HS GA+M P YT D+ L DDI G+QAIYG+S
Sbjct: 109 WEQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHR-DNSPFDGPGGNLAHAFQP--GPGIGGDAHFDEDERWTNNFRE-------YNLHRVAAHELGHSLGLSHSTDIGALMYPSYTF----SGDVQLAQDDIDGIQAIYGRS 263
The following BLAST results are available for this feature:
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