TCONS_00073534-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073534-protein
Unique NameTCONS_00073534-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length264

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073534-protein ID=TCONS_00073534-protein|Name=TCONS_00073534-protein|organism=Clytia hemisphaerica|type=polypeptide|length=264bp
MNVVVFIFGLLALCVFWVNGRPVIEKSPLDAFAEENARNALLFPYLIKKK
IKRCGTVTQSKNYNQGVAKNRKRRFIPQGTAWNKKLLAWRIDENTNDLPN
FLTRFIIRKAFNIWSKWIPITFQEKNKGKVDISIRFVKKIHRPCQVAFTG
QDGIVAHAYYPYQGQDIAGDIHFNDDQRFTHNAEPSNRGGMGTNLAWSAL
HEIGHSLGLEHSNIYGAVMSPFYTSFYHPGVDLALTNDDIKGVQAIYGKS
THSKTNRVDSFLVK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045641XLOC_045641Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073534TCONS_00073534Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021190Pept_M10A
IPR006026Peptidase_Metallo
IPR024079MetalloPept_cat_dom
IPR001818Pept_M10_metallopeptidase
IPR033739M10A_MMP
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Cellular Component
TermDefinition
GO:0031012extracellular matrix
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0031012 extracellular matrix
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021190Peptidase M10APRINTSPR00138MATRIXINcoord: 198..223
score: 58.26
coord: 107..122
score: 44.05
coord: 235..248
score: 56.71
coord: 131..159
score: 23.04
IPR006026Peptidase, metallopeptidaseSMARTSM00235col_5coord: 78..249
e-value: 6.7E-23
score: 92.1
IPR024079Metallopeptidase, catalytic domainGENE3D3.40.390.10coord: 46..256
e-value: 4.9E-51
score: 173.0
IPR001818Peptidase M10, metallopeptidasePFAMPF00413Peptidase_M10coord: 81..248
e-value: 1.3E-42
score: 145.2
IPR033739Peptidase M10A, catalytic domainCDDcd04278ZnMc_MMPcoord: 82..248
e-value: 6.52798E-53
score: 170.077
NoneNo IPR availableSUPERFAMILY55486Metalloproteases ("zincins"), catalytic domaincoord: 74..250

Blast
[Close]
BLAST of TCONS_00073534-protein vs. Swiss-Prot (Human)
Match: MMP1 (Interstitial collagenase OS=Homo sapiens GN=MMP1 PE=1 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 1.355e-32
Identity = 73/169 (43.20%), Postives = 95/169 (56.21%), Query Frame = 0 
Query:   82 WNKKLLAWRIDENTNDLPNFLTRFIIRKAFNIWSKWIPITFQEKNKGKVDISIRFVKKIHRPCQVAFTGQDGIVAHAYYPYQGQDIAGDIHFNDDQRFTHNAEPSNRGGMGTNLAWSALHEIGHSLGLEHSNIYGAVMSPFYTSFYHPGVDLALTNDDIKGVQAIYGKS 250
            W +  L +RI+  T DLP       I KAF +WS   P+TF + ++G+ DI I FV+  HR     F G  G +AHA+ P  G  I GD HF++D+R+T+N           NL   A HE+GHSLGL HS   GA+M P YT       D+ L  DDI G+QAIYG+S
Sbjct:  109 WEQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHR-DNSPFDGPGGNLAHAFQP--GPGIGGDAHFDEDERWTNNFRE-------YNLHRVAAHELGHSLGLSHSTDIGALMYPSYTF----SGDVQLAQDDIDGIQAIYGRS 263
The following BLAST results are available for this feature:
BLAST of TCONS_00073534-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MMP11.355e-3243.20Interstitial collagenase OS=Homo sapiens GN=MMP1 P... [more]
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