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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073543 ID=TCONS_00073543|Name=TCONS_00073543|organism=Clytia hemisphaerica|type=transcript|length=1055bp AGAAAAACGGTGGTAAAAATCCGAGAATTGGTCATAAGGGAACAAGCGAA ATAAACACTAATAGGAAATATGGACTTATCACTGACGAGAAATACCCACC GCAGATGatcaaagaaatgaaaaggaaaaacaacaagcgtgtttttcaaa atgttgaccGTTACTATTGGAAACCAAATAGAAATGGTGTCCTTGAAATA CCATACAAGTTCAATAAAGACTtCACAATCGCTGAAcaacaacaaattaa aaacGTCATTAAGAAAGTCAACGGATACTTGAGTGGTTGTCATAACAACG CATGGGTACCCGCTGCAGCACGCCATTATGGGAAGACTGTTTTAGAATTC GGAAAACGAGTAGGGTGTTGGAGTTACGTTGGTAAAGTTGGAGAACACTA TCTCGAAAGTTTCCCGAATGCTATTCAACCTTTGAGTATTGATGATGGAT GTTTTCTTGAAGgAATCATTGCACACGAGATGATGCATGCCATGGGTTTC CATCATGAACACTCAAGGCCAGACCGTGACCAGTTTGTTCAAATCAGAAG AGAAAACATTCTCGGTGGAtgcgaaaataattttgatatcGCCACTAACA CTGTCCCTGATTACGCTATCTCGCCTTATGATTATGGAAGTGTGATGCAT TATGGTCTATTTGATTTCACTTCCAACGGTAAACAAGTCATCATCCCTAA GAAAACAATTCCGCCAGGCGTTCAAGTCGGACAAAGAAATGGTCTCTCCA ATGGTGACATTGCAGAGCTCAGACGATTGTTCAAGTGTTAAGGGATGGAA CTGgagcggaaaaattaatgcaatttgaggacatgcattaagttacccga gtatcaagttttcaaaagtttggCGCCAAGGCTTTGCAACGGACTCAATG GAACAAGCAACCAAACATTACAACAAATATGGAAGTTTGTCTGGGTTCAA AATGTCATTTGTAAAATACAATCATTATACCTACAAAGGATATTATCATT AGgcttttattttaagttttccttgttttttcttttttttttttggcgtt TTGAG Run BLAST on NCBI protein sequence of TCONS_00073543-protein >TCONS_00073543-protein ID=TCONS_00073543-protein|Name=TCONS_00073543-protein|organism=Clytia hemisphaerica|type=polypeptide|length=262bp
KNGGKNPRIGHKGTSEINTNRKYGLITDEKYPPQMIKEMKRKNNKRVFQN VDRYYWKPNRNGVLEIPYKFNKDFTIAEQQQIKNVIKKVNGYLSGCHNNA WVPAAARHYGKTVLEFGKRVGCWSYVGKVGEHYLESFPNAIQPLSIDDGC FLEGIIAHEMMHAMGFHHEHSRPDRDQFVQIRRENILGGCENNFDIATNT VPDYAISPYDYGSVMHYGLFDFTSNGKQVIIPKKTIPPGVQVGQRNGLSN GDIAELRRLFKC Run BLAST on NCBI transcript from alignment at scaffold_94:364450..376201- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073543 ID=TCONS_00073543|Name=TCONS_00073543|organism=Clytia hemisphaerica|type=transcript|length=11752bp|location=Sequence derived from alignment at scaffold_94:364450..376201- (Clytia hemisphaerica) AGAAAAACGGTGGTAAAAATCCGAGAATTGGTCATAAGGGAACAAGCGAA
ATAAACACTAATAGGAAATATGGTGAGAACTTTTTTATTCGAACCTCTGG
AAGGCTTGGATTGAGGTTTTGAATACTAGGGTCATAGGATCACTAACGAC
CCGAAATAGATATTTTCATGAAATGCATCACTAGCATTGCTTACACCGTT
TTCGAAAAGTTGCTATGGTAATTAATTCCCAAAAGTGTTGATAAGAAGTT
CAATCTTTTTCTGAGGAATAGATTAGATAAAACTATTTTCCGGAAACTTT
ACGTCGATTCCAGGACTTATCACTGACGAGAAATACCCACCGCAGATGAT
CAAAGAAATGAAAAGGAAAAACAACAAGCGTGTTTTTCAAAATGTTGACC
GTTACTATTGGAAACCAAATAGAAATGGTGTCCTTGAAATACCATACAAG
TTCAATAAAGACTGTGAGTAAAGTTATTAATATTTTTCAAGATTCTTTTG
AATGATTTAATTTAAAAAAGTTATAATTTAAAGCATAAAACACCAACCTT
GAACCCAGAGCACAGCTTATGATGGTAGCACCCAAGATTTCACTTGGTAT
GATTCTGTATAGCCGACAATTTATCAAGTCCGTCAATAAGATAAAAAATG
TGGTGCAAGCAGCTCTGGGTACGAGATTAGGTTCAAACTGTAAAAAACTC
CCATATAAAAGTCTAAAACCTAGGCTACACTCATCTGGGAAATGAATGCA
CCGTAAATGAAAACATGGAATTGTAAACAGTGTTCATATAGTGCCCTAGA
AAGAGAAATTATAATATGATAAGTAAGTACCTCGTTACAATTTTCTGAAA
CTTTAAACTTCGCTGATTTTAAATATGTATTTATCCTTTCTTCTCCAAAG
CGCAATTTATCAAAGTGTATGGACTGCCAATTTTGTTTGGCAAAGACTTT
AAAAAGCTTACGATGCTTATGAATTGGATAGTGTCGCCTTTCGTACTAAC
TAACTTTAATTTTCCTTTTAGTCACAATCGCTGAACAACAACAAATTAAA
AACGTCATTAAGAAAGTCAACGGATACTTGAGTGGTTGTCATAACAACGC
ATGGGTACCCGCTGCAGCACGCCATTATGGGAAGACTGTTTTAGAATTCG
GAAAACGAGTAGGGTAGGAATTTCACATCATTCAAATACAGTGTGGCCAG
AAAGAAAGTAAACAAAAATTATAGGAATGAGAAATTTTCTTATGATGACA
TAATTGACTTAATTGTTTTTTTTTTAAACTAAACTTCAAAAATCCATTTA
ACCCTATTTGTATTAGGGGGGGTGCTTTTTTTGTTCGGAGGTCAAATTAT
AAGAACAAAGGAAATTTTCGGTTTTTGCTCACTTTGGACATGATGAGTGA
AGTCATCAAAAAAAATTTTTGTCAAAAGTTACCTTATGTGACAAGGATAT
TGTGTGCCAAATTTCATTTAAAAAGACCCACTAGATCAAAAGTTAAGGGG
TGGTACAGGAAAAGCCTCCCCCCCTAGTTTTGAACCGTCCCTAAAAGCCT
AGTATGAATAGGGTTAATAATAATACAACTTATGGTACTATATGAGATCG
TTCAATTCTTTTGGTCATGTACTATTACCGAGTTTATGTTTGTGTGTTTT
TCAGCGACGGAGACAGTAAGGTTATAATTTGACTAGATCATGACCAACTG
AGGACGACGGTAAATCAGCACTTTTACCGTTCTCGATTTTGCCAGACAGC
AGTGAGGCTTTTTCCAGATCGCTTCAGTCACTTTACCGTCCTCAAAAGTG
CAAATACCATAAACTTGCTAGTAGGTCTAAACCAAAAGCGCACCGCAGCC
AACCTGTTTTTTGACTCTGCCCAAATAAAAAAAGTTGAGCTTGGAATTTT
TTTTAAGTTGAAGCTTAGAATTGTATTGTTTACGTTTACAGGTATTTGAA
TTTAAACAATATCAAAAAAATTAAAATTGTGGAGACACGATACATGAAAA
ATATTGCAGGACCGAACCTTTACTATTGGTAAAACTGCTCTAACCACCAA
ATTTTACTATACTTGGTGTAAGCAAGAACAATGAAACTTTTTTACTACAC
GTTTTTTAGCCTTTTAAGCCTTTTGAGCCTTAAATGTTAAACTTTGTCAA
GCTTAAAGGGGAACTAAACATTTTTTTGAAAATACCTAAATCACATCAAA
TACTTCCAAGGAATGACCCCTGAAAATATTTTTCTCTAAAAACTTCTCTA
TCAAAAGATATAGCTCTTTATGTTTACAGAAAATCTAATCTTTTTAAAGC
AATGCGTATTTTGTTAGGGGAATAGGTCGAGCCATCTGTTTGACGTAAAC
ACGTTCAGAAAGTAATTGGAAAGCTCTTACTTTTAATTGATAGAGAACCT
TTAACTTTTTTAGTGTAGCCATAACTTTTTATCCACAAATAGTTTAACCA
AGAGATAGAATTCATTAAAAAGCCATTTTTGAGTGGAGTAAAACTATGTT
TGAACTTTCGAAAACAAGTGAGTGAAAATGATTTTAGAGTCGATTGAAAA
AATTGAACTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATTGAGAGTGAAAATTATA
TTTTTTCGAAGTTATACTGTGTTGTGTAGTTCTTGGAGACAAAAAAAGCA
TGACCTCAAAAAATGTTTAGTTCCCCTTTAAAGGACGCCTGTCAATAATA
CAATAGTCTAATAGACTAATCTACGGTACAATCCTATCTTCTATATTAAC
TTTCTAACTTTCTCGAGTACTTCTAACTGTTTCGTAAGTATTTTTCTGAA
ACTTTGCCTTGATTGGAAGGTTCTTAAAAAAAAGCGAATTAAAAAACGTT
ATTTTCTCATTCTCAGCCTCAGCATGTTGCTTAGATGTTTCTTAGTTTTT
AAGCATTCTGAGCCTCATGTTTCTTAAAAGTGTGTTTCTTTAAAAAAACG
TGTACTACCACTAAGGTTCCAAATAAATTTCTCCCCCCGTTTATTAATTT
TTGGAAGCCCCCGTTCTTATTAGAGCCCCCCCCCGTTTATTTATTTTCAA
AAAAGGTGAATTTTTCGGGTTTTAGTTAATAATTATCTTATTTTGGGAGG
CTTTTAGAGGTACGATTTCCAACCCCCTTTTCCCCTTTTATTCGGACACC
CCTACTGTTCGGTGTTTTGAAAATCATCAAAGGATCAGTCTTTCAAAACA
TTTGGTATTTCTTTGCAGGTGTTGGAGTTACGTTGGTAAAGTTGGAGAAC
ACTATCTCGAAAGTTTCCCGAATGCTATTCAACCTTTGAGTATTGATGAT
GGATGTTTTCTTGAAGGTAAGAAAGATTAGAAATTAGTATAATCAGTATA
CGAAAATTCTAGCCTCACTCATATAACCCATCTTTCAACATAGAAATAAT
ATCAATATGAAGCATTGAGCACGAGATGATGCATGCTATGGGCTTCCATC
TTAATTTTAGCTATTCTTATATGTTGATTTTTAACCAATAGGAATCATTG
AACATGAGATGATGCATCTTAATTTTAGCTTAAATCCAATCAAATTCTTA
TATGTTGATTTTTTAATCAATTAGGAATCATTGCACACGAGATGATGCAT
GCCATGGGTTTCCATCATGAACACTCAAGGCCAGACCGTGACCAGTTTGT
TCAAATCAGAAGAGAAAACATTCTCGGTGGATGCGAAAATAATTTTGATA
TCGCCACTAACACTGTCCCTGATTACGCTATCTCGGTGAGTGAGTGAATC
CAAATTGGTTCATTGCGTATTATCAGTTTCGTGATATGCTTATTGATAGT
GCGAGATAATACGCTTGCATACATCATATCAGTAACCTCAATAAAGCCTG
GTGCACATGGGAACAGAATTGGAATTAATTAAAATCAACATTTTCTTTCA
AAGCGAAATGGTAGAGATTGCAGGTTTATTTTCAATTTGAACGCGTTGAT
TAGCATAGGGCCAAAACAACATTGCATAAATAAATCGAATCTGCTATGCT
AATTCTCCGCTATGGTTTATCCATAGTCATTATAAAAAACCCCGGTCTGG
AAATGTATGATTTTAGCTTTTTGTTAAATTTTCTTTTTGTTACAAACAAT
CACGTTACCAAAATCTCCTCTTGGGATTGGTCTTATTTGCTAATCACACG
ATCAAAAAGTTTGCAAAATAAATCGATTTTGGTACGTAAGCTCCAGCCTT
TAACAATAAAAAGAGACAAAAGCCTTCCAGACCAGTGTTTTTATAATGAC
TATGGTTTATCAAACGACGTTGCTACCAAGGATTTATTATACACTGGATA
TACAAGTAACAGATTTTTGCCGATTTCTCGTGTACTAGCTATGTCCGCAG
TAATGATATTATTGTTCACTCTCCTTCCNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGAGCCGCCATGACAGTTGTCCTTTGCGGACAAAGCTAGAACAT
CAATTGTTTTCTGAAACAATGAAAATACAATGATCGCTCTCCATCGTTTT
ATGAGTTGTTTATCGTGTATAATAAATCTTTGTTGCTACTACATACCTGT
ATTTTTCTATGAGAAATTATTTCTCTAATTTTATCATGGATGTTCTTAAC
TTTAAAAAAGTTAAGTGAAAAATGGCTTTTTAGGGTATGATCTAACTCGG
TCTTAATTTAACATTCAATATATACCTCAAGCATCAAAATTTGACACTTT
GTGAAAATTTTAAACATTTCTTGAGGATAATTGACAATTGATAGCTGAAA
TTTTCTAAAAATTGGCATTCTTAGGTTCAGTTGTCAATTGTTATGATGTT
ATTCTTAGTGTATCCTTAATTTTTATGCCAATTTCATCATAAATATTCTA
ACAAATTATATTCTTCCTCTGAAGTATAATTCTTCGCCATAAATTTAAAT
TCATACTGTACTGAAAATATTTTATTGCTTCTTCGTAACTAAGTACTTTG
TGACTTTGAAATTAAGGGCTCTGGACATCATACCCAATTTTTCGATTTTA
CACCAACTTAAATGGCAATTTCTGCATTTTCTAAAGATTAATGTATAACT
TCCTGTTAAATGTCCTGTTAAACCTACCTTTTAAGAATTTTAAAATCGAA
AAATTGGGAGGAAAAAATTAAATGAAGAAGAAAACGAAGAGTTTTTTGAA
GAAGAGTATTTCACCTTTAAAAGCCCTAATCTCGGTAAAAAATCAAACAT
TTTGGAATTTTTTTTGGTTCAGGCGATGTATCTATTTAGTATCTAAAAAT
ACATTTTCGGAAAATTTTTGTGGAAGTATCTATCCTTTAAAATCTCCAAA
AAACCTCATTTTTGGCAATTTTCTCCACTAAATTTCCATAGAAAAACAGC
TATAACTTGGGATGTAGCCAAATAGAAAATTTTTCCGAAAAAATCTTAAT
AAAGAAATTATTTGTCATTAACTTAAAAAAAGTTTGAAGCAATAAAATGA
GTTCCCAAAAGAGATTAGGCTTTTTTTGTGAAAAGTATATGAATAGCGTC
GTATTGACGTCCCGGGGGGGGTACTACCCTTGTCGACCGACGGGGGTGCT
CCGCTGAGGTTCGAAAAATGGACCCTACGTGGGACTCGAAATTTGCGAAA
AAAGTGACCCTGAATGGGACTGAAATTCCAAAATTTTCTCAAATTTTCCA
TTTTTTCCCTAAATTTTCCAAAAAAAGGCACCCTACGAGGGACTGATTTT
TCCATTTTGGTGTTTTTGCGACCCTACCTGGGACTCGTGGAGGTTAGAAA
AGGTACCCTGACCAGCGGAGCATCCCCGTAACCCATCTTGCCCTAGTACC
CCCCCCCGGGATTGACGTTTTATAAAGGTCCATGCCACACTTATTCCTTA
ATTACTCATGATGTAATTACTTAAATTCATTTTTTCAAAAGCAGTTTGTT
CTTAAACAAGTCAAAGAAGCGAAAACATAAGCTTTTATCCTCAAATTCTG
AAATTGGATTTTCACTATGACCAGAGCCCTTAAAACGTACCCTGAGTATC
AGAGGTTGAGTTTTCAAAGAATATAATCAACCTCTGAGGACCAATAATAG
AAATTTTATCGCGCATGTGTCAATCTAATCACTGTAGAAAGAATCAAAGA
TGAAGAGCAAATATTACCATATTAATGTCTAGCAAACTGTATCAGTTTGC
AGTTTACTATTTACAAATTCCCCAGAAACCTCCAAATGTAATTGAAATGA
GTTTCTTTCGAAAGAAATCTTTTACATGATTCCCAAATGTATAACAGTAA
TTACTAAACTATTATTGATAATGTTACTTTAAAGGAATGGAAATAATAGG
CAGATGTTTATGGTCGTGTTCAGACCAAGGTTTAAAGCAATTAGGTCTAC
ATGTTTCTTTCATATTCCTTTTGTATTTAACGGCACGCTTCTCATTAGTT
AAACCAAAGTTTAAAAAGGAATCACCCTCTGGTTTAAAAAAAAAGTTTTT
ACGATTTCGTTGCAGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTGCAGAGGGATTCCC
TGAAATCTTTTTTGTTTCAAAGTATCTCAAGAGAGAAGATGACATGATTT
CAAGTTAGGAAAGGAGATTCCTCGAGATCGCCAATCGGATGATGACAAAA
GAAAAGTGATTATAATTGAATTCCCATATCAACAAAGTACTACTTAAACC
TTGAACTTAAACTTTCAGGTCTGAACACGACCTATGTTAAGATTCTCTAT
CACTGACTCTTTTTGAAAAGCATTGATGACATTTTCAAGTTGTGTTTTCA
ACGACGGGAATAAAAATATCAACTTTGAATCCAAGATCTTGGATGGTCGT
CATGGTTACTTTTTTCTGCGTTGATTGCACGCTGAATAGAATCTCGATTG
GTCGGCACAGGTCAATATATGATTTTAGCCTGTGCTTTTCACGGTACTTA
TAACGGCAAGAAATTAAGATAATTTATTTGTTGTTTTTTTGCTGCGACAA
CACGATTAGTTGAGATTAATGTTGAGAAGTTATCCCGCTCACGGTTTCTA
CACGCCTTGTCATATCCATATATTAAAGTAAAGTTGATTCTCGCTAATTT
CAAACTCCAATGAGAAGTCGAATTTGTTCGAATTACAGAGAGGTTCGAAC
TATAGAAGGTATTTCAAACTGTTTTTTCCATGGCGAGGACTAAGAGCAAG
ATTGGCTTATAGAAAGATTCGAATAAAAAAATTTGAATTAGAGAGGATCC
ACTATATAACCGATTTTTGGCTCTTTTTTCCTAGCCTTATGATTATGGAA
GTGTGATGCATTATGGTCTATTTGATTTCACTTCCAACGGTAAACAAGTC
ATCATCCCTAAGAAAACAATTCCGCCAGGCGTTCAAGTCGGACAAAGAAA
TGGTCTCTCCAATGGTGACATTGCAGAGCTCAGACGATTGTTCAAGTGTT
AAGGTGAGACCACGTATGATATTTTCTTTGTTTTTCTGCAATTTGATTGG
CAGATATGTGAAGGTGAGTATACCACGTGATATTTTTCTTTGTTTTTCTG
CAATTTGATTGGCAGATATGTGAAGGTGAGTATACCACGTTAAATTTTTC
CCGTTTTGATTGATGGATAGGCTATTTATGTTATTTTGAAATCACTCTTA
TTCGATATTAAAGGGACTAACACTTTTCTTCGAATTAGAGAGATATTCGA
ATTATAGTGAATTTTACATTAATTTCCAGCATAAGGAACCCAAGTTTTAG
TTCGAATGACAGAAGGACTCGAATTTTAAAAATTCCGATTAAAAAATTGT
ATCACCACACAACTCAAAAATACCTGTCAATTATTGCCAACAACCTTTAG
TAGAAATACCTTTCAATGAAACCAGTCTGTATCGATATTCAGTAGACAAT
CCGTGCTTAGACAGGTTTCCTGGACAAGGTGGATAATTCATAATAAGTGG
CAACACAGAGGCTGTTCATTTAACGTTCCCAGACCATCTAAAAAGAACGA
CAAATAAATATTAAAAAGCGACAAAAAAAACGACAAATTTTTAAAGTACA
ACAAATTTCATATTTCGCCGCCTACAATCCCGACCGAAAGTGACTCTACC
ACCCCTATAGATTCATTCCTCTTTGTTTATCACGGAAATTAACTGCTTGT
GGTTTAAAAGAACGGCAAGTTACACATGCGTACATCCGAGTCGCGTGAAA
ACTATAGTAAAGCAAGCTACATGACTAATTCAGACATAGTGGAAATAAAG
CAAAAAGTAATGGAGGGAACAAATTTTAGTCGTCTAAAAACCGGAAAATA
ATATAGACTTTTACCAAAAACGAAAATTAAATCTAAGTTTCACCGAATAC
AGTATTCTATATCATAATACGCTTCTAAAATTGTTTAAGGGATGGAACTG
GAGCGGAAAAATTAATGCAATTTGAGGACATGCATTAAGTTACCCGAGTA
TCAAGTTTTCAAAAGTTTGGCGCCAAGGCTTTGCAACGGACTCAATGGAA
CAAGCAACCAAACATTACAACAAATATGGAAGTTTGTCTGGGTTCAAAAT
GTCATTTGTAAAATACAATCATTATACCTACAAAGGATATTATCATTAGG
CTTTTATTTTAAGTTTTCCTTGTTTTTTCTTTTTTTTTTTTGGCGTTTTG
AG Coding sequence (CDS) from alignment at scaffold_94:364450..376201- >TCONS_00073543 ID=TCONS_00073543|Name=TCONS_00073543|organism=Clytia hemisphaerica|type=CDS|length=4734bp|location=Sequence derived from alignment at scaffold_94:364450..376201- (Clytia hemisphaerica) CCTTATGATTATGGAAGTGTGATGCATTATGGTCTATTTGATTTCACTTC CAACGGTAAACAAGTCATCATCCCTAAGAAAACAATTCCGCCAGGCGTTC AAGTCGGACAAAGAAATGGTCTCTCCAATGGTGACATTGCAGAGCTCAGA CGATTGTTCAAGTGTTAAGAATCATTGCACACGAGATGATGCATGCCATG GGTTTCCATCATGAACACTCAAGGCCAGACCGTGACCAGTTTGTTCAAAT CAGAAGAGAAAACATTCTCGGTGGATGCGAAAATAATTTTGATATCGCCA CTAACACTGTCCCTGATTACGCTATCTCGGTGTTGGAGTTACGTTGGTAA AGTTGGAGAACACTATCTCGAAAGTTTCCCGAATGCTATTCAACCTTTGA GTATTGATGATGGATGTTTTCTTGAAGTCACAATCGCTGAACAACAACAA ATTAAAAACGTCATTAAGAAAGTCAACGGATACTTGAGTGGTTGTCATAA CAACGCATGGGTACCCGCTGCAGCACGCCATTATGGGAAGACTGTTTTAG AATTCGGAAAACGAGTAGGGACTTATCACTGACGAGAAATACCCACCGCA GATGATCAAAGAAATGAAAAGGAAAAACAACAAGCGTGTTTTTCAAAATG TTGACCGTTACTATTGGAAACCAAATAGAAATGGTGTCCTTGAAATACCA TACAAGTTCAATAAAGACTAAAAACGGTGGTAAAAATCCGAGAATTGGTC ATAAGGGAACAAGCGAAATAAACACTAATAGGAAATATGCCTTATGATTA TGGAAGTGTGATGCATTATGGTCTATTTGATTTCACTTCCAACGGTAAAC AAGTCATCATCCCTAAGAAAACAATTCCGCCAGGCGTTCAAGTCGGACAA AGAAATGGTCTCTCCAATGGTGACATTGCAGAGCTCAGACGATTGTTCAA GTGTTAAGAATCATTGCACACGAGATGATGCATGCCATGGGTTTCCATCA TGAACACTCAAGGCCAGACCGTGACCAGTTTGTTCAAATCAGAAGAGAAA ACATTCTCGGTGGATGCGAAAATAATTTTGATATCGCCACTAACACTGTC CCTGATTACGCTATCTCGGTGTTGGAGTTACGTTGGTAAAGTTGGAGAAC ACTATCTCGAAAGTTTCCCGAATGCTATTCAACCTTTGAGTATTGATGAT GGATGTTTTCTTGAAGTCACAATCGCTGAACAACAACAAATTAAAAACGT CATTAAGAAAGTCAACGGATACTTGAGTGGTTGTCATAACAACGCATGGG TACCCGCTGCAGCACGCCATTATGGGAAGACTGTTTTAGAATTCGGAAAA CGAGTAGGGACTTATCACTGACGAGAAATACCCACCGCAGATGATCAAAG AAATGAAAAGGAAAAACAACAAGCGTGTTTTTCAAAATGTTGACCGTTAC TATTGGAAACCAAATAGAAATGGTGTCCTTGAAATACCATACAAGTTCAA TAAAGACTAAAAACGGTGGTAAAAATCCGAGAATTGGTCATAAGGGAACA AGCGAAATAAACACTAATAGGAAATATGCCTTATGATTATGGAAGTGTGA TGCATTATGGTCTATTTGATTTCACTTCCAACGGTAAACAAGTCATCATC CCTAAGAAAACAATTCCGCCAGGCGTTCAAGTCGGACAAAGAAATGGTCT CTCCAATGGTGACATTGCAGAGCTCAGACGATTGTTCAAGTGTTAAGAAT CATTGCACACGAGATGATGCATGCCATGGGTTTCCATCATGAACACTCAA GGCCAGACCGTGACCAGTTTGTTCAAATCAGAAGAGAAAACATTCTCGGT GGATGCGAAAATAATTTTGATATCGCCACTAACACTGTCCCTGATTACGC TATCTCGGTGTTGGAGTTACGTTGGTAAAGTTGGAGAACACTATCTCGAA AGTTTCCCGAATGCTATTCAACCTTTGAGTATTGATGATGGATGTTTTCT TGAAGTCACAATCGCTGAACAACAACAAATTAAAAACGTCATTAAGAAAG TCAACGGATACTTGAGTGGTTGTCATAACAACGCATGGGTACCCGCTGCA GCACGCCATTATGGGAAGACTGTTTTAGAATTCGGAAAACGAGTAGGGAC TTATCACTGACGAGAAATACCCACCGCAGATGATCAAAGAAATGAAAAGG AAAAACAACAAGCGTGTTTTTCAAAATGTTGACCGTTACTATTGGAAACC AAATAGAAATGGTGTCCTTGAAATACCATACAAGTTCAATAAAGACTAAA AACGGTGGTAAAAATCCGAGAATTGGTCATAAGGGAACAAGCGAAATAAA CACTAATAGGAAATATGCCTTATGATTATGGAAGTGTGATGCATTATGGT CTATTTGATTTCACTTCCAACGGTAAACAAGTCATCATCCCTAAGAAAAC AATTCCGCCAGGCGTTCAAGTCGGACAAAGAAATGGTCTCTCCAATGGTG ACATTGCAGAGCTCAGACGATTGTTCAAGTGTTAAGAATCATTGCACACG AGATGATGCATGCCATGGGTTTCCATCATGAACACTCAAGGCCAGACCGT GACCAGTTTGTTCAAATCAGAAGAGAAAACATTCTCGGTGGATGCGAAAA TAATTTTGATATCGCCACTAACACTGTCCCTGATTACGCTATCTCGGTGT TGGAGTTACGTTGGTAAAGTTGGAGAACACTATCTCGAAAGTTTCCCGAA TGCTATTCAACCTTTGAGTATTGATGATGGATGTTTTCTTGAAGTCACAA TCGCTGAACAACAACAAATTAAAAACGTCATTAAGAAAGTCAACGGATAC TTGAGTGGTTGTCATAACAACGCATGGGTACCCGCTGCAGCACGCCATTA TGGGAAGACTGTTTTAGAATTCGGAAAACGAGTAGGGACTTATCACTGAC GAGAAATACCCACCGCAGATGATCAAAGAAATGAAAAGGAAAAACAACAA GCGTGTTTTTCAAAATGTTGACCGTTACTATTGGAAACCAAATAGAAATG GTGTCCTTGAAATACCATACAAGTTCAATAAAGACTAAAAACGGTGGTAA AAATCCGAGAATTGGTCATAAGGGAACAAGCGAAATAAACACTAATAGGA AATATGCCTTATGATTATGGAAGTGTGATGCATTATGGTCTATTTGATTT CACTTCCAACGGTAAACAAGTCATCATCCCTAAGAAAACAATTCCGCCAG GCGTTCAAGTCGGACAAAGAAATGGTCTCTCCAATGGTGACATTGCAGAG CTCAGACGATTGTTCAAGTGTTAAGAATCATTGCACACGAGATGATGCAT GCCATGGGTTTCCATCATGAACACTCAAGGCCAGACCGTGACCAGTTTGT TCAAATCAGAAGAGAAAACATTCTCGGTGGATGCGAAAATAATTTTGATA TCGCCACTAACACTGTCCCTGATTACGCTATCTCGGTGTTGGAGTTACGT TGGTAAAGTTGGAGAACACTATCTCGAAAGTTTCCCGAATGCTATTCAAC CTTTGAGTATTGATGATGGATGTTTTCTTGAAGTCACAATCGCTGAACAA CAACAAATTAAAAACGTCATTAAGAAAGTCAACGGATACTTGAGTGGTTG TCATAACAACGCATGGGTACCCGCTGCAGCACGCCATTATGGGAAGACTG TTTTAGAATTCGGAAAACGAGTAGGGACTTATCACTGACGAGAAATACCC ACCGCAGATGATCAAAGAAATGAAAAGGAAAAACAACAAGCGTGTTTTTC AAAATGTTGACCGTTACTATTGGAAACCAAATAGAAATGGTGTCCTTGAA ATACCATACAAGTTCAATAAAGACTAAAAACGGTGGTAAAAATCCGAGAA TTGGTCATAAGGGAACAAGCGAAATAAACACTAATAGGAAATATGCCTTA TGATTATGGAAGTGTGATGCATTATGGTCTATTTGATTTCACTTCCAACG GTAAACAAGTCATCATCCCTAAGAAAACAATTCCGCCAGGCGTTCAAGTC GGACAAAGAAATGGTCTCTCCAATGGTGACATTGCAGAGCTCAGACGATT GTTCAAGTGTTAAGAATCATTGCACACGAGATGATGCATGCCATGGGTTT CCATCATGAACACTCAAGGCCAGACCGTGACCAGTTTGTTCAAATCAGAA GAGAAAACATTCTCGGTGGATGCGAAAATAATTTTGATATCGCCACTAAC ACTGTCCCTGATTACGCTATCTCGGTGTTGGAGTTACGTTGGTAAAGTTG GAGAACACTATCTCGAAAGTTTCCCGAATGCTATTCAACCTTTGAGTATT GATGATGGATGTTTTCTTGAAGTCACAATCGCTGAACAACAACAAATTAA AAACGTCATTAAGAAAGTCAACGGATACTTGAGTGGTTGTCATAACAACG CATGGGTACCCGCTGCAGCACGCCATTATGGGAAGACTGTTTTAGAATTC GGAAAACGAGTAGGGACTTATCACTGACGAGAAATACCCACCGCAGATGA TCAAAGAAATGAAAAGGAAAAACAACAAGCGTGTTTTTCAAAATGTTGAC CGTTACTATTGGAAACCAAATAGAAATGGTGTCCTTGAAATACCATACAA GTTCAATAAAGACTAAAAACGGTGGTAAAAATCCGAGAATTGGTCATAAG GGAACAAGCGAAATAAACACTAATAGGAAATATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00073543-exon-scaffold_94-1575043694:376130..376201 | TCONS_00073543-exon-scaffold_94-1575043694:376130..376201 | Clytia hemisphaerica | exon |
TCONS_00073543-exon-scaffold_94-1575043694:375739..375888 | TCONS_00073543-exon-scaffold_94-1575043694:375739..375888 | Clytia hemisphaerica | exon |
TCONS_00073543-exon-scaffold_94-1575043694:375039..375180 | TCONS_00073543-exon-scaffold_94-1575043694:375039..375180 | Clytia hemisphaerica | exon |
TCONS_00073543-exon-scaffold_94-1575043694:372286..372383 | TCONS_00073543-exon-scaffold_94-1575043694:372286..372383 | Clytia hemisphaerica | exon |
TCONS_00073543-exon-scaffold_94-1575043694:371867..372027 | TCONS_00073543-exon-scaffold_94-1575043694:371867..372027 | Clytia hemisphaerica | exon |
TCONS_00073543-exon-scaffold_94-1575043694:365649..365817 | TCONS_00073543-exon-scaffold_94-1575043694:365649..365817 | Clytia hemisphaerica | exon |
TCONS_00073543-exon-scaffold_94-1575043694:364450..364712 | TCONS_00073543-exon-scaffold_94-1575043694:364450..364712 | Clytia hemisphaerica | exon |
TCONS_00073543-exon-scaffold_94-1510915933:376130..376201 | TCONS_00073543-exon-scaffold_94-1510915933:376130..376201 | Clytia hemisphaerica | exon |
TCONS_00073543-exon-scaffold_94-1510915933:375739..375888 | TCONS_00073543-exon-scaffold_94-1510915933:375739..375888 | Clytia hemisphaerica | exon |
TCONS_00073543-exon-scaffold_94-1510915933:375039..375180 | TCONS_00073543-exon-scaffold_94-1510915933:375039..375180 | Clytia hemisphaerica | exon |
TCONS_00073543-exon-scaffold_94-1510915933:372286..372383 | TCONS_00073543-exon-scaffold_94-1510915933:372286..372383 | Clytia hemisphaerica | exon |
TCONS_00073543-exon-scaffold_94-1510915933:371867..372027 | TCONS_00073543-exon-scaffold_94-1510915933:371867..372027 | Clytia hemisphaerica | exon |
TCONS_00073543-exon-scaffold_94-1510915933:365649..365817 | TCONS_00073543-exon-scaffold_94-1510915933:365649..365817 | Clytia hemisphaerica | exon |
TCONS_00073543-exon-scaffold_94-1510915933:364450..364712 | TCONS_00073543-exon-scaffold_94-1510915933:364450..364712 | Clytia hemisphaerica | exon |
TCONS_00073543-exon-scaffold_94-1491911889:376130..376201 | TCONS_00073543-exon-scaffold_94-1491911889:376130..376201 | Clytia hemisphaerica | exon |
TCONS_00073543-exon-scaffold_94-1491911889:375739..375888 | TCONS_00073543-exon-scaffold_94-1491911889:375739..375888 | Clytia hemisphaerica | exon |
TCONS_00073543-exon-scaffold_94-1491911889:375039..375180 | TCONS_00073543-exon-scaffold_94-1491911889:375039..375180 | Clytia hemisphaerica | exon |
TCONS_00073543-exon-scaffold_94-1491911889:372286..372383 | TCONS_00073543-exon-scaffold_94-1491911889:372286..372383 | Clytia hemisphaerica | exon |
TCONS_00073543-exon-scaffold_94-1491911889:371867..372027 | TCONS_00073543-exon-scaffold_94-1491911889:371867..372027 | Clytia hemisphaerica | exon |
TCONS_00073543-exon-scaffold_94-1491911889:365649..365817 | TCONS_00073543-exon-scaffold_94-1491911889:365649..365817 | Clytia hemisphaerica | exon |
TCONS_00073543-exon-scaffold_94-1491911889:364450..364712 | TCONS_00073543-exon-scaffold_94-1491911889:364450..364712 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_94 | supercontig | scaffold_94:364450..376201 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0004222 | metalloendopeptidase activity |
GO:0008237 | metallopeptidase activity |
GO:0008270 | zinc ion binding |
Vocabulary: Biological Process
Term | Definition |
GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006508 |
proteolysis |
molecular_function |
GO:0004222 |
metalloendopeptidase activity |
molecular_function |
GO:0008237 |
metallopeptidase activity |
molecular_function |
GO:0008270 |
zinc ion binding |
Blast
BLAST of TCONS_00073543 vs. Swiss-Prot (Human)
Match: ASTL (Astacin-like metalloendopeptidase OS=Homo sapiens GN=ASTL PE=1 SV=4) HSP 1 Score: 102.449 bits (254), Expect = 3.305e-24 Identity = 69/243 (28.40%), Postives = 112/243 (46.09%), Query Frame = 3
Query: 72 GLITDEKYPPQMIKE--MKRKNNKRVFQNVDRYYWKPNRNGVLEIPYKFNKDFTIAEQQQIKNVIKKVNGYLSGCHNNAWVPAAARHYGKTVLEFGKRVGCWSYVGKVGEHYLESFPNAIQPLSIDDGCFLEG--IIAHEMMHAMGFHHEHSRPDRDQFVQIRRENILGGCENNFDIATNTVPDYAISPYDYGSVMHYGLFDFTSNGKQVIIPKKTIPPGVQVGQRNGLSNGDIAELRRLFKC 788
GLI +E + E + R + R+ W +GV+E+P+ + + +Q I + + + + + + GC+S VG+ G +Q +S+ C +G I+ HE+MH +GF HEH+R DRD+++++ IL G E NF + ++ ++PYDY SVMHYG F+ G I P P V +GQR LS DI + +L+ C
Sbjct: 61 GLILEETPESSFLIEGDIIRPSPFRLLSATSNK-WPMGGSGVVEVPFLLSSKYDEPSRQVILEALAEF-------ERSTCIRFVTYQDQRDFISIIPMYGCFSSVGRSG---------GMQVVSLAPTCLQKGRGIVLHELMHVLGFWHEHTRADRDRYIRVNWNEILPGFEINFIKSQSS---NMLTPYDYSSVMHYGRLAFSRRGLPTITPLWA--PSVHIGQRWNLSASDITRVLKLYGC 281
The following BLAST results are available for this feature:
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