TCONS_00073494 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073494
Unique NameTCONS_00073494
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3598

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073494 ID=TCONS_00073494|Name=TCONS_00073494|organism=Clytia hemisphaerica|type=transcript|length=3598bp
GCAAGATCTTAGTATGCTACAGTTAAACACAACTGCAGGACACAGGAAGA
AATGAcaacaacatttaaaaaaaagcttaCATGGTGTGTCAACTTGACAG
GAACAGGATGAGGAAGGATTCCAATATCGAATGGCTCAGGATCAACCCAA
AGGAAAATTGAGTTTAACAGTTTGCTAGACatttccaaataaaaaagaGA
GGCCGTCTGTCTGGCTGGAATCTTCGTCTTCTTTCCCCTCCGTCTGCTCT
CTGCTGTCTGCGTCGGTTTGTTTACATGCGACACAGAAGGAGGTCCCAAC
ACACAACTTGTGCTACCATTATGACTAGGCCTTCAATCTTTTTGCCAATC
TCAGGCGCTTTCTCAGGTTAGGTatctacaaaaacaaacctGTCATGTGA
CCAattcactttcgctttcaaggaaaaaatttcaacctGGAGTCCCCCTC
AAAAGTTTGTCGAAACAGTAGACAAAAGAAAGTAAATCTTCATGCAAGGA
TGGCTGAAGAGATTAATTTTGCAGGTGAAAGTGCACACTGGTGCTTGAAT
GCTAATAAGGGCTATTATCGATTTCTCGTCCTATTCTTTAACTGTTTGCT
GACATTTGGAtcctatttttgttttgacatgCCAAgTGTTTTGCAAGACA
GTTTTACTGGGACTTATGGAATCAATTGCACAACAAATAGTCATAATGTA
ACAAAATGTGAAGAACATCTGGGAATGACTGAAACTGAATATAATTTACT
TTACACTGTTTATGCATGGATGAATGCTTTGGTAGTTATTGGCTCTGGTA
TATTCATTGATAAAGTTGGTCAAAGAGTTGGTGCAGTGTTCTTCTCAGCC
CTTTGTGTTGTTGGTTCTGCTATCTTTGCATCTGGATATTTCTTGAAAGG
GCGTGGATCAATGCTTGTCTTATTTTTGACGGGGCGTCTTTTATTTGGGG
CTGGAAATGGCTCATTAACAATTGCGCAAAACAGGATCTCAGCTTATTGG
TTTGAAGGGAAGGAATTGGCATTTGCATTTGGAGCAACTCTTTCATTCTC
CAGACTGGGAAGCATATTAAACTTTTTCTTGACTAAAGACTTTTCACAGA
CCTATGGATTGAAATGGACACTCTGGGGAGGTGTATTTCTGTGCATTCTT
GGATTTGGCGGAGCACTTGTATTATACGTACTGGACAAGAATGGTATGGA
GCAAATAGCCCAGCAGCGTGAGCCAGGAGCCAAGAAATCGAGAAAGATGA
AAGTTGGTGATATTCGACATTTGAGTTTGCAATTCGTTCTATTGGCAGTC
ACCACAATGAGTTTCTACAACACTGTCTTCCCTTTTGTGGCTGACGCAAG
TCAGTTCATACGTGAGAAGTACCACTATAGTGATGACAGTGAGATGCCAT
CTTATTATGCGGGAAGTGTTTACGATGTATCTTTGGTTGCCACTCCTATC
CTCGGTATCATTGTGgATTATTTGGGTTATCGAGGCCTCTTAGCCTTTGT
ATGCGCCATCTTCACCATTCCAGTGTATTTGATTCTTGCTTTCACTACCT
GGCATCCGTTGTATGGAACCGTCCTCTTGGGACTCACCTATTCTGCTGCT
GCTACAAGTCTGTGGCCATCAGCGCCTTTGGTGGTGAATCCTGGCGTTCT
TGGTACCGCCCTTGGTTTGATGACCTCCCTCCAGATGATCGGTATCGGTG
TATGCTCACTCGTTGTGGGTGCAATCCTCGATAAGTTGAAGACGAACGAT
CACAAATGGGAATATGTGATGATCTTTTTGTTAGCCAATGCTGTTTTGTG
TGTCATCTCTGCTCTATTCCTCAACATTGTTGACTGGAGAAGGAGTGGTA
ttttgaacaaaacaaagaaaagaaactcGCAGAAGATGAAGAAATTGACC
GAATCGCGTGAAGCGTTGGTAGGGGATGCGGCCGAAGGTGACGGAGATTC
CATTAATTAACCACCGAATCATGGATTGGAATTATACCATTCATATTTTg
cattatttttcaatattgttTACAAGAAAGTAAGAGATATTATATTCACG
GTACATTGTGTAATACAGACACAACCTCCATTTTCAATGCAAAGAAACTT
ACTGTAGTAACGGATTTTGCACAAGATTCGAAACAGAAAGGTGAAAGGTG
AAACTACTTGAGgagataatcagatggtttgagatatttggcatgtggaC
TCCCTCTATTGTCCTGAGAAAAAgcccaaaatatttttagctaACAATTT
TCCAAGTTAAGATATACAAACtacaagtttttgacttttagtaaGCAAAC
AGTAGAATTTTAAAGCACGAACCGTGTAAGAACCCttttttcttgacttt
taaAAATAGTTAGATTTAAAAATACTTGAGGTTTTACTCAAGACCACAAA
AGGTTACTACAGTCCAAATAACTCAAGCCATCTGATTATCTCGTTAATGT
AAGTAAGCTATTTAGCACCGTAAAATAATTCTCAAGGGAAAAATAGTGAG
TAGTTAGGTTTTAAGtaagctttgaaaattttttttgaacgcTGTAGAGT
AAATGGACAAAACTGAATGAGTTGGAGGCTAGAAGTAAACGTCCAACTTT
TCCTACTGTAGGCAAGAAAAATGATGTCTTAAGATTTGCGCCGAATCGtg
gatgacggattgaatctattCTTTTCGCCTGGCACTTTTTccaaatttag
cggtaaatgtTACATTCAATCTCTTTAGCAGTTGAATGAAAACCACTTAT
GATGCGCAACTTATGTAGCTTTGAATCTTACATAGGAAATTCGTTTCTAG
CCTTCAACTTATACAGACGatagaatatttttaaatagtCCCATTGTACC
TACTTAGTATTGGATTTTTACGACaattattttgtttctaaagTATTCTT
CGTTTTTTATATTTCCATAGTCCAGATGTATTTTGTCATTTCAGTCCATa
atatttaagtatttttcaTTTGATTATCCATTAGTATTGATCAACAACTC
CTTCctcccaaaaatcgaaaatcggaATACGCTGCTAGATTAAAACGAAC
CTACTAAAGTTAACTTTGAATAAGCTGGTATTAAGAGCTGCATTTTGACA
CCCAAAGAATCTGCAATGTAATTTTAAGTCTCGGGAGCTAAATAAATTAT
CTAATATGGGAACTGGGTTTGTGACGACGCACGGTAAAGGATCGTGTTAT
CAAGCTTCCAAAgtacaaacatttttttcaaccaattcTCCTCGGTTTAA
TGTTGTTGTTTGCGACGAGCAGTCCTCTAGTGGGAGATTTCTTTTATGAC
GTACGAGCACGGCAAATAACTAAGCTCGttttatttgcaaaatatcATTA
TCTTCTATTTTCTATCTTTATTTGTGATTAATAATTTGACGTacataaat
tatttctttttttcagttagCATTAGATTTTAGTCTTAATATATAGATTT
ATAgtcttttttgtaagaataaatAAACTTCTATTCTAAATTGACCGAAG
TCTTCCGAAGGAATTAATCGCAATCGACTGATAATTGATTTTGTTCCTAT
TGCGTTGAGAAAAAGGATTGAAAGCTTTATAGTGGGTCGTAATTGGAA
Run BLAST on NCBI

transcript from alignment at scaffold_93:193527..206905+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073494 ID=TCONS_00073494|Name=TCONS_00073494|organism=Clytia hemisphaerica|type=transcript|length=13379bp|location=Sequence derived from alignment at scaffold_93:193527..206905+ (Clytia hemisphaerica)
GCAAGATCTTAGTATGCTACAGTTAAACACAACTGCAGGACACAGGAAGA
AATGAcaacaacatttaaaaaaaagcttaCATGGTGTGTCAACTTGACAG
GAACAGGATGAGGAAGGATTCCAATATCGAATGGCTCAGGATCAACCCAA
AGGAAAATTGAGTTTAACAGTTTGCTAGACatttccaaataaaaaagaGA
GGCCGTCTGTCTGGCTGGAATCTTCGTCTTCTTTCCCCTCCGTCTGCTCT
CTGCTGTCTGCGTCGGTTTGTTTACATGCGACACAGAAGGAGGTCCCAAC
ACACAACTTGTGCTACCATTATGACTAGGCCTTCAATCTTTTTGCCAATC
TCAGGCGCTTTCTCAGGTTAGGTatctacaaaaacaaacctGTCATGTGA
CCAattcactttcgctttcaaggaaaaaatttcaacctGGAGTCCCCCTC
AAAAGTTTGTCGAAACAGTAGACAAAAGAAAGTAAATCTTCATGCAAGGA
TGGCTGAAGAGATTAATTTTGCAGGTGAAAGTGCACACTGGTGCTTGAAT
GCTAATAAGGGTCagtatttcaatttcattttcctttatcTCCCACACTC
TCACCTCGCCCAGTGTCTGGAAATTGCAGCGGTTATCTCCGGCGTAGATT
TGAAGTTTGAGATCTGCTGCCTTCAACTTTTCCCAGTTAAGTTGGCGCAG
CTCCGGCGTAACATTTCCCTCCTTTCCAGACTGGCACCTCGCCTCGACTG
TAgcagcaactccagaagatttttctagagacctgaaatttggatgCAGA
ATTCTTTTTTGATGGTGTAagtagaatattattatataaaaatatttgta
aaatatttagtatatttatgaaaataacaaaagatatatctttttttgaa
aaaagaagacattgcattgttttatttttttttttgaagaaaattagctt
ggaaaaggaggaccctgccgacgcaccggactgtccggtgtatttgtccg
gtggcaaaaagtatcctttcgctacaccggacgcaataagtccggtgtca
gtcctgtgttgcatacagggaattttggacaccggacatttatgaaacaa
aaaattaagaaacaccggacgcaccggactggtcatgtccggtgttctGA
TtatccggtggaaaaaatatccttctccaacACCGGACATATGACtttct
taagtccggtgtagagattgtccggtggtaaaaaaagttctcattttaca
ccggactttcgcgtgtccggtgttcgttaagtccggtgcgtcggcagggt
cctggaaaaggttgaaatgagtcaaaaaaggtggtaggacccattttcaa
ggggcctctggaaatggaggaacaaaaagttataagtgaagaataagttt
ttcttaaaaagagaaaccccaaatgaaaagaaaatccatttcggcaaaaa
tgaaaacttttttttgggacattcccatgctaaagaagcaagaaagtgaa
aaaaactatatacataaaaaaaaagaactaaaattagcgaatgtgatttt
gaattcctcaccctttttctgataaacatacaaagtttcagcctttaACT
Acgttttcctccatttccagaaacatttgttcatcaatagttgcaacttt
tttttctcctgtcagaaaacaattttgaaaatgtttcaaaaacgtTCGGC
ACTTTACCAATtggccgtctagcccgtgtcaacagaatttgaaaaatctt
ctgaaGTTGCTACCTTCTTTCCAGCAGGCTAGCTCTAGCCTGGAGataca
tgctatgatttcttattctatatactgatggcgaaatatatagcatggca
TGGGCTGAGAGttaatttcccagatcctaataacggttgaaaatatagcc
aatcaaattttgatattattttactggtcacactttcttatagagaaagc
gcaagttccgaaatttgatttttattttagtaagtgaggacagcgccaAA
TTCGATTATCCCACTGTAAAtcttttgaggcagaaatctgcctcaggtca
tacccgtcctgtatacatcagattataaaagtACAGGACGGTTATCCTGT
ttaggctagctctaaagctctaaaacagtaTCTAataccagacggtgtca
atcgaacgaatcgaacgctgaatcaattgaacgcaattgaacacaatcaa
agttgcaattcgattgtcgaacgcaatcaaattgcaattgaatattacct
AGGATTTGCCGTTCCATTgcttcgattatgttcgattgtattcgacagta
tatagacctaactcttcatacaaaaattacgggaaacgcatgtttggact
ttgtaccctatgcttcacgcaagcacttaagccagagtcccgcaaaggcg
ggacaaaaatgtTTGTCGAGCTCCCCCGCGGGTGAAAAACTATAATCTGT
CAATAatcttctcaagcgaagagtatgcCAAGagctagctttacgatagt
gccgcagatcatcagtggatagtattcaattatcatatCATgtagcatag
ggtacaaagtccaaattaTGCGTTTCCTGTAATTTTCGTATGAAGAGTTA
AGTCTATACTGTCCAGTCTAATGTCGGTTATTCCGGAAAAATAGTGGATA
GATTCCAGAAAAGTGATaggaatcttagtgcagaaatgggaaACAACAAA
TGGAAAAAACAACACTACCAATCGATAGCCAATCAATAGACTTTTTTGCC
CTTCCATCATCCGTCATATTGAATTAGGCTTGGATATTGCAGATAAGAAT
CTTAAAAACACTCGATGATCAAAACGCTGGCTACACTAAATCTccaaaat
tctttgaataaaatcactaaaaaatccgacaaattttatgactttctGAC
TAGGAAAGGGGCACATTTTTAAGAAAGTGAGTCAGTCAAAGGACCCGAAC
ACAACTTTATTTGTGACCGTGGCCTTATGATACAAAGATTATGGTGGTCA
AATTGTCGCAGTGAGAGTTcattgaaaatatgcaaaacatatgcaaaaaa
atataatataaaacttacatgcatgaAATTAGCATTATATCTGATTATAT
TAAAGTGCAATCTCAGAATCTTGTAAAAGAAAGATTaattttgcttctct
tgaaaaccaGAAATACAAATAGTTATATCCTCTCATCTCTGACAACAACA
ACCAGCACTTCAATAAACCGCCATAACATTATACataaagctgaaaaatc
accagaAAAGGTACACAATTTACCATTAAATCATCCTGACGGTAACTGTG
TGTGTATGTGTTTGTGTctgtccgaaaactttggggcaggctggagactt
gaaaaatgatcagatttggatgaaatttggcacacttgttccttgggtga
atatatgggggtgttttttcattttttgaaaattttcatttttaagggcg
tggtcacaagttttcgccaaaacgaggctaaaactttggggtaggctgga
gacttcaaaaatgctcagatttggttgaaatttggcacacttgttccttg
ggtgaatatctgggttttttttttcattttttgaaaatctttatttttaa
gggcgtggtcacgagtttttgcctaaacgaggctaaaactttggggcaga
ctGGAGATTTCAAGGGCAAATCCCTGTGGGTGGTTTTCATTGTTTTATAA
TTTCCATTTTAAGGGGGTGGTCATGAGTTTTTAGTTGAAATTggttacaa
ttttacaattgggcctataaatgatttaaaaacactgaagttgagcccag
tgcggttagcacgttcaacagtaatatataatataccgaattactttcaa
ataatatAGAATATACTTTTTATATATCTAATTGACCCAGCAAATTTTTA
GCTTGTTCAGACATTTTAGGGACATATataaagcaaaaatttcaagattt
tgcaAGGACTTAAATTTTGCAGGTGGCATTATAGGGAgacaatatttttt
atgattttgtgcCTTTTACTACCCAATCATGCATGTTGCTTGTTGAAATA
agcattattagcgcttctttgatcaACATTTTAGAAGtagttatttgaca
tttttgagttttgttcaaaaataGATATCGCAGATAAGACCTTTCTAAAT
TTACATTGGGtgatgacacccaaatctgcAAGATCtccaaaatttaatcc
ccgtgaaaatttatcccattgtACTGGTCGAGTGAAGGAAAGCGTAATTT
gtcacaaaacaaaaaagaaatgtgCTGCAAAACTTCTGAAAAgggtttta
tgaaaaaataaactggCAGTTTTTAATGAAACTTTAACACTTAAAAAATC
TAGGCTTTGAGCCATagtggtattttttttcaatttttgcctgtagtgca
aatcagtacccccaggggggttcggccaattttggacttctgaccttaaa
attGTGCAgcatgcctcacaataggttaaattttcataaaaaaacactac
atcttgaattttttgactttgacaTATATTATAAAGCTTTCCGATACCAC
TTTAAAAGTAATCATCATGCTCATAATTATGCTCTTTTTTTTAGGCTATT
ATCGATTTCTCGTCCTATTCTTTAACTGTTTGCTGACATTTGGAtcctat
ttttgttttgacatgCCAAggtattttcagattttcagattttcatgttt
ttaaaatgacAATCAAAATGTTATTTGTCAGATTTTATTTTATCGAGATC
CTATTAATCTTCCTCCACTgctttatatttttgaaatctacctTTATTTC
ATGTATATGCAATGATCGTCAAATAACTAAAATCTTTCAATGTCTAAATC
TTGTTTTAGTGTTTTGCAAGACAGTTTTACTGGGGTgagaatttctttta
ttttcctaaaGTTTCATTACTACCAAAAGCTGATATGAAATGTGTCACCA
TAAGGCTGTAGATAAATACTTAATACATCGTGTCAAAGCGAAATCAAATT
ACGCCAAATTAGTCACACTTAAAATTCATTTGGAGATCATGATTGTCAGT
CGAATATTTTTTCAGTCAAGAATTGACCAATAATCGGTGCTTATTTTTCT
GTACAATAGTTAACAATAATGATATTGTGGATATATTTGATGAAGGGATG
TTTAAATTGTGGGTCCTGTAATTTATAAATCTGTGGTTATTGATCATTTT
ACTTCATCCCTCAGACTTATGGAATCAATTGCACAACAAATAGTCATAAT
GTAACAAAATGTGAAGAACATCTGGGAATGACTGAAACTGAATATAATTT
ACTTTACACTGTTTATGCATGGATGTAAGacaatatttctttttaaaaag
tgtAGAAAACCCAAACACATTTTATATATATCTATATGTAATTTTAGTAT
TGATTGCGAATAACAATATTGTTAATTGCAAAATGTATATGGATGTATGT
AAGAAATATTGTGTTTGAAGAATTGAAGATTTGTCAGGGTACACAAACTT
CCTTCTCTCGCACTAATCTTGTTTTAATTCAGGATATAAATGTTATTGCT
CCTGAAAGGATTATAACAATTTTATAACGGAACAACTAACTTTTATATTT
CTACTTTAGGAATGCTTTGGTAGTTATTGGCTCTGGTATATTCATTGATA
AAGTTGGTCAAAGAGGTTTGTATTATTTTGATGTGGAttccaaaacaaaa
taaaaagagaTTAAGGGAACTGGTGTCCTCATTTCTTGAGTTTTAATGTA
TGATAACTAGTAAGTAAATTGCTCATAATTGTATATAATACAAACTAAGA
AAGTAAAGTCTGTGACAGTGGATATGACAATTATCGTATAAAATTAATAT
GGTTTACttaaaattattgttttttcattttttgatgttgcacACTAACT
ATAAACATTCTCAAAATCTTCTACCTCCCATCTCAGATTACATTTAATAT
TATCAAGTTAGATTAATGTAAAACTGTAAAAACAGTAGATGAGAAATTAT
GTCCTTCCTTTAGTTGGTGCAGTGTTCTTCTCAGCCCTTTGTGTTGTTGG
TTCTGCTATCTTTGCATCTGGATATTTCTTGAAAGGGCGTGGATCAATGC
TTGTCTTATTTTTGACGGGGCGTCTTTTATTTGGGTGAGTTATCTTCATA
AATAAAGTTTGTTCCAATCTAAGAAAACATAACTTGTGATTACGATTATC
AAAAaagattcatttttcaaaagcagttttcATTCATCTTTGAAACATGT
TTGCCCCTTTttctatttgaattttttaattatgtAAAATGACATAATTT
GTGGAGGATCTTCTTTCTCTAGAGTACTCCGTGCGTAGTAGAGCTTTTTA
TATGAACAGAACTGTTCCGTATGTAAAATCATATGAATCAGCTTTTTCCC
TTTGTATTTTTCAGGGCTGGAAATGGCTCATTAACAAGTAAGatgttttt
tcaaattatttccaGCAATATCATTAACAAAATCAACTCTGGCCTTTTTT
GTCTTTGGACCCCTTTGGATGATCAAGATCATCTTTCTAACTAAAATACG
GTGGCCCCTAAGGCTCACAACATACTTCCAGTTCTGACACAAATCCATTT
TGcaaatttataagaactgaAAGTGTCTTGTGAGCCTTAGGGGCAACCgt
aatgaaaaaaacttttttgctcCTGTATCTACTCATTGAATTACTGTTTA
TGAAACCAGTGTAcagatttttttattatatccGCAATTTTCTTCTATTT
ACAGTTGCGCAAAACAGGATCTCAGCTTATTGGTTTGAAGGGAAGGAATT
GGCATTTGCATTTGGAGCAACTCTTTCATTCTCCAGACTGGCAAGTTAAT
CAAACTTCTTCAAAGATCAAGAAAATTGTCTTTACCCAAATACACTAAAA
TTCGATGACCATGATGATACTGCTGGACAGAAaataagggaactaatttt
tgcgttgaaaaaaaattgaatctttTAGTGAAAAATGGCCAAATTTGTAA
TTTGCAGGTTctaattttcacgattttgcaaaaaaaccaAGAGAAAAGCC
TTAATCAGCtcccacgaaaattagttcctttaAGGTTAAGATTGTCTATG
AGGTCCCTACTTATGTTATATGATACCCAGTCCAAATAGCCATATTTAAC
TTGATTTAACATTCCGCTGACATGACCTTAATGTAAACTGTTTTGCATTT
CTGTTTTACAGGGAAGCATATTAAACTTTTTCTTGACTAAAGACTTTTCA
CAGACCTATGGATTGAAATGGACACTCTGGGGAGGTAAAGATACTTTTAG
GAAAGTTTTTAATCTTGACAAATAATTGATATTTTGTTACAACGGTTATC
CTTTTACACCATTacatttcttttgaaagtttttcccTTATATCTAATCT
ATCTTTTCAGGTGTATTTCTGTGCATTCTTGGATTTGGCGGAGCACTTGT
ATTATACGTACTGGACAAGAATGGTATGGAGCAAATAGCCCAGGTGGGTA
GCGCTCTATTTATTTAAGAATTCCTTTATGAGGCCCCCTAAGccgttttc
gtgatggcgtgataaggacctttttcttgcgtgattacgtgatttggaat
tttttcttcgtgattgtATGATTATAGGTCAaggcgtgatcgtgatttga
aagatttttgagccgtgatgcgtgatttggtNCGTGATGGCGTGATAAGG
ACCTTTTTCttcgtgattacgtgatttggaattttttcttcgtgattgcA
TGATCATAGGTTAaggcgtgatcgtgatttgaaagatttttgagccatga
tgcgtgatttggacttgATGCATGATTATCctaatttttttgctgatttt
cgtgatcgtgattgaagataAAAATTATGTGATATCTTGAGCAGACTTAC
CGATGGGGGGGGGCTCCTTTATTAAGGCAGTGAAAAAAGAAAGTTCCTCC
CTCAGACCCGGTGGAAGTGGGTAGACTGGGGAGACTTTCCCATGTTAATG
gttgttccaccgggcctgtACCTGATAGTCTTTATTAGATGCTAGAATGT
CTATTAATAGATatttaagaaaagaaatttgacagTAAATTTGTTGCAAA
ACAGTGGCTTACCGAATAGCGTAAAAACTCGAATAATGGATCTTTAACTG
TATATATACTGAACATTCTAAATTTACTATCTTTACAGCAGCGTGAGCCA
GGAGCCAAGAAATCGAGAAAGATGGTAATTTCTCCTTTCTGTGTATTTTT
CCTTTCtatgtttttcttctttagaCATGTGTTTTGATAAGCCTGGTTGT
CATACTGCTTCATATCACAGTGTTCAAGATCTATTAGAAAATTCATAATA
ACAATTGTTATAGTTCATTGAGGCTCAGATAACTCCAAATATTGTTTCTT
CACTTTACAAAGGAGCTCATCATTTCTAGCCATCTCAATTAAAATCTTTA
CTGTTTatgaaatttataaattatAGCATTACTCACAAGTTTTGAAAAGT
CACGATAGGAGTTTTTCGGATTTCGTTGCATTACAACTTTATGAGCATTT
TCATTCATATGCTTTTTAGAAAGTTGGTGATATTCGACATTTGAGTTTGC
AATTCGTTCTATTGGCAGTCACCACAATGAGTTTCTACAACACTGTCTTC
CCTTTTGTGGCTGACGCAAGGtatcatcaaaatttcattatacGGCAACT
AATGGGGTCGGTTAAGGCTAAGtagaaaaattcaagaaaagaaGCGGCAC
AATATCTTTCTTTTGGTATACAGCTAAGGAATATGCCAGTTCTTCGGGTT
GCCCTTTTCTTTGTCCAAGTAATAAAGTTTTTGATCTGTAGAGGTGATTT
TGGTATACAGCTAAGGAAAACACCACGTCTTCTGGTCACCTTTTTTTTTG
TCTAAATAATAAAGTCTTTCAAACTTCATATGCATATAGGTACAAAAAGT
TTAGGTACTTTTTTCTAACCCATTCAATAGATGACTGTAGAATCTCAACT
GAATCTTGAACTCCTTTTACTTTATTGTATTGAAAGTTACAGCCCCTGCA
AGTGTTAAagaagattttgagaaacttaacttttaagaaagatatagagg
tttttcatggtTTTTCATCAGTTACGTAACTTCCGTAATGTTCGATTCGC
GTAGGGATCACCTCTAAAGATTCGAACGTTACCTTCCATAATGGCGTTAT
ATAAAGCAAAACATGCAAAACTTTTATAcgtctttttttgtttttttttt
tatacagTCAGTTCATACGTGAGAAGTACCACTATAGTGATGACAGTGAG
ATGCCATCTTATTATGCGGGAAGTGTTTACGATGTATCTTTGGTTGCCAC
TCCTATCCTCGGTATCATTGTGGTGAGTCGAgtctaaactttttttaaaa
ggggTAATCGTCAGttaaacaatgaaattcaactgaaaaaattctttcac
GGAGAAAAAGTAAGATAATGACCCTCAGAAAAGTTCACAATAGAATCAAC
ATTTTCTTGTgataaatgaaacattttttcatcatttataCTAGCCTTAC
GATATTCATCTATAACTTAAAACTGTTCTTTTAGTTTTGTGCAGTTTAAA
AGGTCAAGAATATTATTCGCCCTAGTGACTTTATTTTTCTACGTAGAGAT
GTAATGTTTCACAAAGGTTTTTTTCAAATACCCAGGCAATTTCAATATTC
CATTTCAATTGACCCCTTGTGTTAGTATGATCTGATTGGATCTGATTGAA
TTcgatcactgacctttatatatccctggaccaagttccTCAATGCCAGC
CaggcaaaatattatgatcggagtttttttgaaattggNCAAGTCCCTCA
ATGCCAGCCaggcaaaatattatgatcagagtttttttgaaattgatacc
cgcggagagagcgctagatcttgTTTCGCTTGTACACTAATGATATAGCC
CCAtttgtcgttaggcaaagtctcaaacactacaatggcttcttcgtggg
taccattttcaaaaaaacttcgatcaaagatggcggatgtagcttggtcc
agggatatataaaggtcagtgggcgAGATCAATTTGattgaaatcattga
aaacaCTCTTCACAATCTGACACTGAAAGTATCAtaaaattctttcattt
caggATTATTTGGGTTATCGAGGCCTCTTAGCCTTTGTATGCGCCATCTT
CACCATTCCAGTGTATTTGATTCTTGCTTTCACTACCTGGCATCCGTTGT
ATGGAACCGTCCTCTTGGGACTCACCTATTCTGCTGCTGCTGTAAGTTCA
ACCCATTTAGCCAAGGCATCACATGCTAAGGTCGGTCTCCATAAGTGGCC
GCCTACCACCAATTCTTTTCAATCTAAGCTTTTGCTTAGATGTCATTGGC
CCGATTTTGGTGtatatttttttgcatttttgcctGTGTTGAACTCTTTT
TAGCGAAGAGAACGCTCGAAGTCCAAAAGGACCGACGACGGCAAGCTTTT
TCATAAAGGCAAAAAAAATCGTCTCTAGATATTCAGGGTGGTAGAGAAGA
ATCTCTTCTccaaacaaaaaggttaaagTGGAAGAAGCTATTGCAAAGCG
TATGATTTTTGCcatgagttttcaaaaattattttcagtctttcttttgt
ttttacaagggttttttttattgtttcttCATAGACAAGTCTGTGGCCAT
CAGCGCCTTTGGTGGTGAATCCTGGCGTTCTTGGTACCGCCCTTGGTTTG
ATGACCTCCCTCCAGATGATCGGTATCGGTGTATGCTCACTCGTTGTGGG
TGCAATCCTCGATAAGTTGAAGTAAGTgttgaataaaaatatagagTGTT
TGGTTTTTTTAGGAAAGTTCTTTTCCGCGATTCCTTCTATTTCGAGACAT
GTATCTTTAAAACTTCTAAAGTTTAGAAGTATTctataagtttttttatt
ttttgttaaattacGTAACCTCTGCCATTATGGAAGTAAACGTTCGATTT
ACGTAAAGAATTGCTTCTaaacattcgaacgtttgcttccatatgTGGAA
ATTACGTGGCTTACTAATGTATGGAAAACCTCAAAACTCATTGGTATGCT
ATGGCATAGCATACCAATGAGTTTTTATGGTAATCTGTTTTGGGTAATTT
CGAATAACAGATTCGTAAGTTGTTTTGAATTTAAGGGCCTAAGAGAAAAT
TTTTAAGGTAAAAGTTTTATTGATAGACTACTATATTTTATCATATTATG
AAcgtgaaattttgtttttacagGACGAACGATCACAAATGGGAATATGT
GATGATCTTTTTGTTAGCCAATGCTGTTTTGTGTGTCATCTCTGCTCTAT
TCCTCAACATTGTTGACTGGAGAAGGGTAAGTTTGAATATCATTGGATAG
AACAAACCCTTTGATAATCTTTGTCAGTTTTGAGCTTCGAGAAGGTCATG
AAAAATCACACTTATAATTTAACTCCAGGTTTatgaggcattgttaactg
gctagaaaatttgttcgagttaaggagagaTTCGAATCCTAGATGTTCgg
gttatggagactccacctAACTCTAACAAAATGTGAATggctaaaaaatt
cttttactcTCCTCATACACACAGAGTGGTAttttgaacaaaacaaagaa
aagaaactcGCAGAAGATGAAGAAATTGACCGAATCGCGTGAAGCGTTGG
TAGGGGATGCGGCCGAAGGTGACGGAGATTCCATTAATTAACCACCGAAT
CATGGATTGGAATTATACCATTCATATTTTgcattatttttcaatattgt
tTACAAGAAAGTAAGAGATATTATATTCACGGTACATTGTGTAATACAGA
CACAACCTCCATTTTCAATGCAAAGAAACTTACTGTAGTAACGGATTTTG
CACAAGATTCGAAACAGAAAGGTGAAAGGTGAAACTACTTGAGgagataa
tcagatggtttgagatatttggcatgtggaCTCCCTCTATTGTCCTGAGA
AAAAgcccaaaatatttttagctaACAATTTTCCAAGTTAAGATATACAA
ACtacaagtttttgacttttagtaaGCAAACAGTAGAATTTTAAAGCACG
AACCGTGTAAGAACCCttttttcttgacttttaaAAATAGTTAGATTTAA
AAATACTTGAGGTTTTACTCAAGACCACAAAAGGTTACTACAGTCCAAAT
AACTCAAGCCATCTGATTATCTCGTTAATGTAAGTAAGCTATTTAGCACC
GTAAAATAATTCTCAAGGGAAAAATAGTGAGTAGTTAGGTTTTAAGtaag
ctttgaaaattttttttgaacgcTGTAGAGTAAATGGACAAAACTGAATG
AGTTGGAGGCTAGAAGTAAACGTCCAACTTTTCCTACTGTAGGCAAGAAA
AATGATGTCTTAAGATTTGCGCCGAATCGtggatgacggattgaatctat
tCTTTTCGCCTGGCACTTTTTccaaatttagcggtaaatgtTACATTCAA
TCTCTTTAGCAGTTGAATGAAAACCACTTATGATGCGCAACTTATGTAGC
TTTGAATCTTACATAGGAAATTCGTTTCTAGCCTTCAACTTATACAGACG
atagaatatttttaaatagtCCCATTGTACCTACTTAGTATTGGATTTTT
ACGACaattattttgtttctaaagTATTCTTCGTTTTTTATATTTCCATA
GTCCAGATGTATTTTGTCATTTCAGTCCATaatatttaagtatttttcaT
TTGATTATCCATTAGTATTGATCAACAACTCCTTCctcccaaaaatcgaa
aatcggaATACGCTGCTAGATTAAAACGAACCTACTAAAGTTAACTTTGA
ATAAGCTGGTATTAAGAGCTGCATTTTGACACCCAAAGAATCTGCAATGT
AATTTTAAGTCTCGGGAGCTAAATAAATTATCTAATATGGGAACTGGGTT
TGTGACGACGCACGGTAAAGGATCGTGTTATCAAGCTTCCAAAgtacaaa
catttttttcaaccaattcTCCTCGGTTTAATGTTGTTGTTTGCGACGAG
CAGTCCTCTAGTGGGAGATTTCTTTTATGACGTACGAGCACGGCAAATAA
CTAAGCTCGttttatttgcaaaatatcATTATCTTCTATTTTCTATCTTT
ATTTGTGATTAATAATTTGACGTacataaattatttctttttttcagtta
gCATTAGATTTTAGTCTTAATATATAGATTTATAgtcttttttgtaagaa
taaatAAACTTCTATTCTAAATTGACCGAAGTCTTCCGAAGGAATTAATC
GCAATCGACTGATAATTGATTTTGTTCCTATTGCGTTGAGAAAAAGGATT
GAAAGCTTTATAGTGGGTCGTAATTGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045617XLOC_045617Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073494-exon-scaffold_93-1491911889:193527..194086TCONS_00073494-exon-scaffold_93-1491911889:193527..194086Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:193527..194086TCONS_00073494-exon-scaffold_93-1510915933:193527..194086Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:193527..194086TCONS_00073494-exon-scaffold_93-1575043694:193527..194086Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:198121..198196TCONS_00073494-exon-scaffold_93-1491911889:198121..198196Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:198121..198196TCONS_00073494-exon-scaffold_93-1510915933:198121..198196Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:198121..198196TCONS_00073494-exon-scaffold_93-1575043694:198121..198196Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:198386..198410TCONS_00073494-exon-scaffold_93-1491911889:198386..198410Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:198386..198410TCONS_00073494-exon-scaffold_93-1510915933:198386..198410Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:198386..198410TCONS_00073494-exon-scaffold_93-1575043694:198386..198410Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:198741..198850TCONS_00073494-exon-scaffold_93-1491911889:198741..198850Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:198741..198850TCONS_00073494-exon-scaffold_93-1510915933:198741..198850Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:198741..198850TCONS_00073494-exon-scaffold_93-1575043694:198741..198850Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:199136..199191TCONS_00073494-exon-scaffold_93-1491911889:199136..199191Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:199136..199191TCONS_00073494-exon-scaffold_93-1510915933:199136..199191Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:199136..199191TCONS_00073494-exon-scaffold_93-1575043694:199136..199191Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:199540..199660TCONS_00073494-exon-scaffold_93-1491911889:199540..199660Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:199540..199660TCONS_00073494-exon-scaffold_93-1510915933:199540..199660Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:199540..199660TCONS_00073494-exon-scaffold_93-1575043694:199540..199660Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:199941..199963TCONS_00073494-exon-scaffold_93-1491911889:199941..199963Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:199941..199963TCONS_00073494-exon-scaffold_93-1510915933:199941..199963Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:199941..199963TCONS_00073494-exon-scaffold_93-1575043694:199941..199963Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:200281..200366TCONS_00073494-exon-scaffold_93-1491911889:200281..200366Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:200281..200366TCONS_00073494-exon-scaffold_93-1510915933:200281..200366Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:200281..200366TCONS_00073494-exon-scaffold_93-1575043694:200281..200366Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:200738..200810TCONS_00073494-exon-scaffold_93-1491911889:200738..200810Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:200738..200810TCONS_00073494-exon-scaffold_93-1510915933:200738..200810Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:200738..200810TCONS_00073494-exon-scaffold_93-1575043694:200738..200810Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:200937..201019TCONS_00073494-exon-scaffold_93-1491911889:200937..201019Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:200937..201019TCONS_00073494-exon-scaffold_93-1510915933:200937..201019Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:200937..201019TCONS_00073494-exon-scaffold_93-1575043694:200937..201019Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:201715..201750TCONS_00073494-exon-scaffold_93-1491911889:201715..201750Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:201715..201750TCONS_00073494-exon-scaffold_93-1510915933:201715..201750Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:201715..201750TCONS_00073494-exon-scaffold_93-1575043694:201715..201750Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:202096..202196TCONS_00073494-exon-scaffold_93-1491911889:202096..202196Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:202096..202196TCONS_00073494-exon-scaffold_93-1510915933:202096..202196Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:202096..202196TCONS_00073494-exon-scaffold_93-1575043694:202096..202196Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:202784..202898TCONS_00073494-exon-scaffold_93-1491911889:202784..202898Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:202784..202898TCONS_00073494-exon-scaffold_93-1510915933:202784..202898Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:202784..202898TCONS_00073494-exon-scaffold_93-1575043694:202784..202898Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:203680..203817TCONS_00073494-exon-scaffold_93-1491911889:203680..203817Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:203680..203817TCONS_00073494-exon-scaffold_93-1510915933:203680..203817Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:203680..203817TCONS_00073494-exon-scaffold_93-1575043694:203680..203817Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:204211..204347TCONS_00073494-exon-scaffold_93-1491911889:204211..204347Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:204211..204347TCONS_00073494-exon-scaffold_93-1510915933:204211..204347Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:204211..204347TCONS_00073494-exon-scaffold_93-1575043694:204211..204347Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:204800..204902TCONS_00073494-exon-scaffold_93-1491911889:204800..204902Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:204800..204902TCONS_00073494-exon-scaffold_93-1510915933:204800..204902Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:204800..204902TCONS_00073494-exon-scaffold_93-1575043694:204800..204902Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1491911889:205151..206905TCONS_00073494-exon-scaffold_93-1491911889:205151..206905Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1510915933:205151..206905TCONS_00073494-exon-scaffold_93-1510915933:205151..206905Clytia hemisphaericaexon
TCONS_00073494-exon-scaffold_93-1575043694:205151..206905TCONS_00073494-exon-scaffold_93-1575043694:205151..206905Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_93supercontigscaffold_93:193527..206905 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.9186	9.68078	3.91215	4.75836	6.9121	7.05376	10.0776	7.94964	8.75442	8.91321	10.3723	8.07661	9.55995	8.24638	9.6863	10.1126	8.93751	7.0828	6.35533	7.4542	6.46673	5.55064	10.3472	9.61834	11.7017	12.9231	4.78945	3.45714	10.0347	9.55532
Blast
[Close]
BLAST of TCONS_00073494 vs. Swiss-Prot (Human)
Match: MFSD1 (Major facilitator superfamily domain-containing protein 1 OS=Homo sapiens GN=MFSD1 PE=2 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 4.725e-54
Identity = 135/393 (34.35%), Postives = 198/393 (50.38%), Query Frame = 2 
Query:  593 CLLTFGSYFCFDMPSVLQDSFTGTYGINCTTNSHNVTKCEEHLGMTETEYNLLYTVYAWMNALVVIGSGIFIDKV-GQRVGAVFFSALCVVGSAIFASGYFLKGRGSMLVLFLTGRLLFGAGNGSLTIAQNRISAYWFEGKELAFAFGATLSFSRLGSILNF----FLTKDFSQTYG------LKWTLWGGVFLCILGFGGALVLYVLDKNGMEQIAQQREPGAKKSRKMKVGDIRHLSLQFVLLAVTTMSFYNTVFPFVADASQFIREKYHYSDDSEMPSYYAGSVYDVSLVATPILGIIVDYLGYRGLLAFVCAIF-TIPVYLILAFTTWHPLYGTVLLGLTYSAAATSLWPSAPLVVNPGVLGTALGLMTSLQMIGIGVCSLVVGAILDK 1735
            C L FGSYFC+D P+ LQ                  T+ +  + +  T++ LLY  Y+W N ++    G  ID+V G R G + FS    +G  +FA G    G  +   L   GR +FG G  SL +AQN  +  WF+GKEL   FG  LS +R+GS +N     +L        G      L  TL  G   CIL    AL L  LD+   E+I  + +   K    +K+ D++  SL   L+ +  + +Y  VFPF+     F  EK+ +S  S+  S     VY +S   +P+ G++VD  G + ++  +CA+  T+  +++LAFT W+P     LLGL+YS  A +LWP    VV    LGTA G M S+Q +G+ + S++ G ILD 
Sbjct:   50 CFLGFGSYFCYDNPAALQ------------------TQVKRDMQVNTTKFMLLYAWYSWPNVVLCFFGGFLIDRVFGIRWGTIIFSCFVCIGQVVFALG----GIFNAFWLMEFGRFVFGIGGESLAVAQNTYAVSWFKGKELNLVFGLQLSMARIGSTVNMNLMGWLYSKIEALLGSAGHTTLGITLMIGGITCILSLICALALAYLDQRA-ERILHKEQ--GKTGEVIKLTDVKDFSLPLWLIFIICVCYYVAVFPFIGLGKVFFTEKFGFS--SQAASAINSVVYVISAPMSPVFGLLVDKTG-KNIIWVLCAVAATLVSHMMLAFTMWNPWIAMCLLGLSYSLLACALWPMVAFVVPEHQLGTAYGFMQSIQNLGLAIISIIAGMILDS 414
The following BLAST results are available for this feature:
BLAST of TCONS_00073494 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MFSD14.725e-5434.35Major facilitator superfamily domain-containing pr... [more]
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