TCONS_00073500 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073500
Unique NameTCONS_00073500
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1630

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073500 ID=TCONS_00073500|Name=TCONS_00073500|organism=Clytia hemisphaerica|type=transcript|length=1630bp
TTTGTTATTGCTATAGATCGGTATCTGACAATCAGTCGACCTTTTAACTA
CCGGTTTGCAGAAAAACATTACAGGATGATGATTTGTGTGGTATGGATAT
ATGCAGCTCTCTGGGGAGTTCTCAGCAATGTTGATTTTGAAACCTATCAA
TTCCAATCAACCTTCCATATCGATCATGGAAAATGCCAGCGGAAAGACAT
CATTTTCCCACGTGTTTTATTCATCGCAGTTTTCTTTTTGCCTTGTTTAG
TCATGTTTTATATGCATGCTTGTGTATGGAAGATCGCTGTTGAtcaagga
aaaaaaatcgagaaagaAAACACAccgacacttcaattcaaaAGACTAAC
AGGCGTAGAGAATAGTGAAAAAAGCTCTAAACAACTGTTACCAAAATATC
TCAAGCAGTTTTCAAATTCTTCATCAGGAAAATTCAAAGTTGAGTTTCGC
GCTACAAAGATTATTCTCTCCGTATTCGGCACCTATCTTATCTGCTGGGC
ACCTGTCACCATTATGACTTTCATGCGGACTTTCAGAACGTTCAACATCG
ACAAGAATGCGTATTTGTTTCTGTGTAGCTTTCTACCAAATCTGAACAGT
TGTCTAAATCCGTTTCTGTATTGTTTACTTCATCGAGACTTTATAAACGC
GTTGAAAACAGTCTATAGGCGCCTAAAGTTTGTTAGTAAACATGAGATGT
CGATCAAACATAGAGCTAACACTGGTGAAATTATACGGACCAGAAAAGCA
AACACTAGGTGATATCTAGCGGACCAGAAGGTTAAAGATTACGCAAAAAT
ATACGGACCAAATACAAGTTTAGTAGTGTTATACGGACCAAAGGAGCAAA
CACTAGATAACATTATACGGACCAGAAGAAAAAACACTAGATAATATTAT
GGGGACCAAAAGAGCAAACACTAGATACAATTataccatagtccgtataa
aaaaacccagtctggaagccttttgtttctttccattgtttcttacttga
acttgcgttgagaaattagtttgttttgctcactgtTTGATCatttgatt
aaatcttaaaccaatcccaagaggaatacttggtaacgtgataaaaaact
gagcaaatcgatttctatcttttgatattaacaaaggaaaaagctaacaa
aaaattaaaacaataagcATCCAGaacagggttttttatacgaaCTATGA
TTATACGGACCAGAAGAGCAAACACTAGATAACATTATATGGACCAGAAG
AGAACGTTTCGCTCCAAATGAGCAACGTACCTACTTATCTTTTGAATACA
ATGTTTGAAAAGAACCAAAGCAAATATTCAAGGAAAAGTTGTCAACTAGA
TTCAAACAAAACAAGAGTCAAAGTAATATTTCCGTTTCTGGCAAAGAAAA
ACGGCTTGAAATGATTTGGAACGCTACGTAGTTTTGGCTCGCAATATCGA
GGACAGACAATACACTCCGTCCTAATAAGCCAGTCAATCTAATAAAAAAG
AAGACCCGCCACCGCTTGATTTCTATATTTAaggaatgaaaaaatatttt
caatcacACGAACTACAGACTTCCTAAAGATttcaatgatacaaaataaa
cgtTGTATCAGTACAGTGGGTGTATCTCGA
Run BLAST on NCBI

transcript from alignment at scaffold_93:96934..99517-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073500 ID=TCONS_00073500|Name=TCONS_00073500|organism=Clytia hemisphaerica|type=transcript|length=2584bp|location=Sequence derived from alignment at scaffold_93:96934..99517- (Clytia hemisphaerica)
TTTGTTATTGCTATAGATCGGTATCTGACAATCAGTCGACCTTTTAACTA
CCGGTTTGCAGAAAAACATTACAGGTATCACATTTTATCAAATTATATTT
TTGTATCGCTTGAACAGCAGGCCTGTTTTCGGATCAAATATATATCAACA
GTATTGCAGGAAACCCATCTGTATACACACGCACTATGAAAGGGGAGGCT
AACAGTCATTGATTTTTTCTTTGACATGTCTTGTAACTTGATTGCGAAGA
AAAGAAATTAACGAAGCCAGTCCTGATATTTTTAGATGTTACTAATTCGA
TTACTTACAAGCTTTTAAGCTCTTTTACATGTATTGACACTATAAGTTTC
CTCGAGTCGAATCTTTCAAAACAAGTCCGAGTGAAGAAAACGAGCTAAGT
AAATTTCATACTCGAAGTTTTATGCCACATAGGATGGCATCTTTCAGTGA
AATAAACGTTTCACTCAAAAATGTCATATATAAGATTCTCAATTAAGACA
TCTACTCGATGTCAGCATATTAACCCCAATTGATGTTGTTTTGTTCTCTA
GTTTCCCCAGTGCGTTTTGTGTCTTTTAAAGGTACCAAGTCAAATATTTC
GCCTTTGGCATACAACTTTTACCACTTTTACCACTTTTACCAGTTAAAGA
AGATTGAGTTATTAAAGTTCGAGCTTCCAGCGGTCTGTGTGATGGTGTGA
TTGGCCCTTTTTTTATTGTAGTAGTGGTGTGTTCTATGATTTCAAAAGAG
TGATGGTACATGTGATCACTCATCACTGTGATGGTGTCAAAAGATTTTTC
TTTGTATAATGACGCGATTAGAATTTAGTTTTGCTCCGCTAGGAGGGGCC
TCTATGAAGACTCTGGTGCATCAAATTTTCTTTAAATTTCAGGATGATGA
TTTGTGTGGTATGGATATATGCAGCTCTCTGGGGAGTTCTCAGCAATGTT
GATTTTGAAACCTATCAATTCCAATCAACCTTCCATATCGATCATGGAAA
ATGCCAGCGGAAAGACATCATTTTCCCACGTGTTTTATTCATCGCAGTTT
TCTTTTTGCCTTGTTTAGTCATGTTTTATATGCATGCTTGTGTATGGAAG
ATCGCTGTTGATCAAGGAAAAAAAATCGAGAAAGAAAACACACCGACACT
TCAATTCAAAAGACTAACAGGCGTAGAGAATAGTGAAAAAAGCTCTAAAC
AACTGTTACCAAAATATCTCAAGCAGTTTTCAAATTCTTCATCAGGAAAA
TTCAAAGTTGAGTTTCGCGCTACAAAGATTATTCTCTCCGTATTCGGCAC
CTATCTTATCTGCTGGGCACCTGTCACCATTATGACTTTCATGCGGACTT
TCAGAACGTTCAACATCGACAAGAATGCGTATTTGTTTCTGTGTAGCTTT
CTACCAAATCTGAACAGTTGTCTAAATCCGTTTCTGTATTGTTTACTTCA
TCGAGACTTTATAAACGCGTTGAAAACAGTCTATAGGCGCCTAAAGTTTG
TTAGTAAACATGAGATGTCGATCAAACATAGAGCTAACACTGGTGAAATT
ATACGGACCAGAAAAGCAAACACTAGGTGATATCTAGCGGACCAGAAGGT
TAAAGATTACGCAAAAATATACGGACCAAATACAAGTTTAGTAGTGTTAT
ACGGACCAAAGGAGCAAACACTAGATAACATTATAAGGACCAGAGGGGAA
AGCACTACATAACATTATGCGGATCAAAAGAGCAAACACTAGATAAAATT
ATACGGACTAGAAGAGCAAAAACTATATAACATTATACGGACCAGAAGAG
AAAACACTAGATAACATTATACGGACCAGAAGAAAAAACACTAGATAATA
TTATGGGGACCAAAAGAGCAAACACTAGATACAATTATACCATAGTCCGT
ATAAAAAAACCCAGTCTGGAAGCCTTTTGTTTCTTTCCATTGTTTCTTAC
TTGAACTTGCGTTGAGAAATTAGTTTGTTTTGCTCACTGTTTGATCATTT
GATTAAATCTTAAACCAATCCCAAGAGGAATACTTGGTAACGTGATAAAA
AACTGAGCAAATCGATTTCTATCTTTTGATATTAACAAAGGAAAAAGCTA
ACAAAAAATTAAAACAATAAGCATCCAGAACAGGGTTTTTTATACGAACT
ATGATTATACGGACCAGAAGAGCAAACACTAGATAACATTATATGGACCA
GAAGAGAACGTTTCGCTCCAAATGAGCAACGTACCTACTTATCTTTTGAA
TACAATGTTTGAAAAGAACCAAAGCAAATATTCAAGGAAAAGTTGTCAAC
TAGATTCAAACAAAACAAGAGTCAAAGTAATATTTCCGTTTCTGGCAAAG
AAAAACGGCTTGAAATGATTTGGAACGCTACGTAGTTTTGGCTCGCAATA
TCGAGGACAGACAATACACTCCGTCCTAATAAGCCAGTCAATCTAATAAA
AAAGAAGACCCGCCACCGCTTGATTTCTATATTTAAGGAATGAAAAAATA
TTTTCAATCACACGAACTACAGACTTCCTAAAGATTTCAATGATACAAAA
TAAACGTTGTATCAGTACAGTGGGTGTATCTCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045620XLOC_045620Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073500-exon-scaffold_93-1575043694:99444..99517TCONS_00073500-exon-scaffold_93-1575043694:99444..99517Clytia hemisphaericaexon
TCONS_00073500-exon-scaffold_93-1575043694:97839..98625TCONS_00073500-exon-scaffold_93-1575043694:97839..98625Clytia hemisphaericaexon
TCONS_00073500-exon-scaffold_93-1575043694:96934..97702TCONS_00073500-exon-scaffold_93-1575043694:96934..97702Clytia hemisphaericaexon
TCONS_00073500-exon-scaffold_93-1510915933:99444..99517TCONS_00073500-exon-scaffold_93-1510915933:99444..99517Clytia hemisphaericaexon
TCONS_00073500-exon-scaffold_93-1510915933:97839..98625TCONS_00073500-exon-scaffold_93-1510915933:97839..98625Clytia hemisphaericaexon
TCONS_00073500-exon-scaffold_93-1510915933:96934..97702TCONS_00073500-exon-scaffold_93-1510915933:96934..97702Clytia hemisphaericaexon
TCONS_00073500-exon-scaffold_93-1491911889:99444..99517TCONS_00073500-exon-scaffold_93-1491911889:99444..99517Clytia hemisphaericaexon
TCONS_00073500-exon-scaffold_93-1491911889:97839..98625TCONS_00073500-exon-scaffold_93-1491911889:97839..98625Clytia hemisphaericaexon
TCONS_00073500-exon-scaffold_93-1491911889:96934..97702TCONS_00073500-exon-scaffold_93-1491911889:96934..97702Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_93supercontigscaffold_93:96934..99517 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0494407	0	0.0856892	0.107711	0.0529193	0	0.272577	0.0212773	0	0.0517163	0.0353138	0.0485925	0.256486	0.100399	0.0152883	0.0571705	0.17297	0.079872	0.0278606	0.25545	0.0756119	0	0	0	0	5.61247e-06	7.44394e-08	0.0285217	7.08125e-09
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073500 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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