Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073468 ID=TCONS_00073468|Name=TCONS_00073468|organism=Clytia hemisphaerica|type=transcript|length=2644bpRun BLAST on NCBI transcript from alignment at scaffold_92:259747..269889- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073468 ID=TCONS_00073468|Name=TCONS_00073468|organism=Clytia hemisphaerica|type=transcript|length=10143bp|location=Sequence derived from alignment at scaffold_92:259747..269889- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00073468 vs. Swiss-Prot (Human)
Match: RABEK (Rab9 effector protein with kelch motifs OS=Homo sapiens GN=RABEPK PE=1 SV=1) HSP 1 Score: 55.4546 bits (132), Expect = 3.998e-17 Identity = 43/180 (23.89%), Postives = 80/180 (44.44%), Query Frame = 1 Query: 1318 HSAVMIGSKLYIFGGWDAPTCHDDIYCLDIVIMKYTRLKPIGEGPSARTWHSTSVLSNPNQFCIYGGFDGNDSLNDLFVFDSVKTCWSKIHNEHNSILRAG---HTSLLMTSPYS-------------------DDDVTK-------ANNKSQV-----LIFGGGDNAGQFYNDVILLDV 1755 H V G+KL+I GG +DD++C+DI MK+ +L P G P+ HS + I+GG +L+ ++ + + + W+ + + +++L G H+ ++ P + +D K ++ +SQ L+FGG + G+ Y+D I+ V Sbjct: 196 HVMVAAGTKLFIHGGLAGDRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAHSAVAMG--KHVYIFGGMTPAGALDTMYQYHTEEQHWTLL--KFDTLLPPGRLDHSMCIIPWPVTCASEKEDSNSLTLNHEAEKEDSADKVMSHSGDSHEESQTATLLCLVFGGMNTEGEIYDDCIVTVV 371 HSP 2 Score: 52.373 bits (124), Expect = 3.998e-17 Identity = 49/204 (24.02%), Postives = 82/204 (40.20%), Query Frame = 2 Query: 644 KAMMQAKPSKTPEMAKRRVIRKSGKSPAAKFSDLISHENPTGRWGHGCCKICHDKAIVIGGQTKQQMNTDSMWLLDLKTRKWELQKSDNSTIDRRVGHSVVYDEKRNLVFVYGGSKPKKWYSDVYSLNLATFEWEKSETIGKAPT-RAYH-SCNKFHDELFVFGGVYPNPDPDPDGCSNELVIYDIANKSWYTPIISGDIPNPR 1249 K + +P P A + G SP A+ S+ P G G K ++GG + +D + +DL +W+L + R S + + ++V+GG+ + + LN T W E P+ R +H S ++L+VFGG P D +L ++D +W P G+ P+PR Sbjct: 2 KQLPVLEPGDKPRKATWYTLTVPGDSPCARVGHSCSYLPPVGNAKRG-------KVFIVGGANPNRSFSD-VHTMDLGKHQWDLDTC-KGLLPRYEHASFIPSCTPDRIWVFGGANQSGNRNCLQVLNPETRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVQD---TKLHVFDANTLTWSQPETLGNPPSPR 193 The following BLAST results are available for this feature:
BLAST of TCONS_00073468 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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