TCONS_00073409 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073409
Unique NameTCONS_00073409
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length993

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073409 ID=TCONS_00073409|Name=TCONS_00073409|organism=Clytia hemisphaerica|type=transcript|length=993bp
TGTGAAGTTGATAgattgataaaaaatatcaaaaatggaacAACAGATAT
GAATTGGGATTCCATTTGCCTCAAccTTGCAGGAGCAGGTGGACCAGTGG
TGTGTCGACCATCAACAATATTAATGTTATGGAATTACGATTGCAACATT
GTGAAACAGTTGAACCAATCACAAATCCTGGCCAAAGTCAATGATGATAC
TGCACTGCAAACATTAACCGGGAAAATCAATTTGGATTTATTGCTTGGTA
GTATTGTAAGGTCAAATGGTGACATCACTGGAGCAAGTGCAaccaaaatg
acttattttctGAAGAACCAGGAAGTGTATGTTGAAAGCCAGGGAAAAAA
TGTTGACCAGAAAGGAGAGGATTGGGAGACAGAGTTTTCTGATGTTTTCA
TCAAACAAAAGGTCACTGGTGGTTTTGACAAAgtatacattttttctttt
gtcagtcaacaAGACGAGAGTGGTGGACAAATTTCTgacgatttgaaatt
tttgtttgttgGTTATGTTTTGATCATTGCATACCTTGGTATCATGTTAG
GAAGTTTCTCCAGACTCGACCAAAAGgTTTGGTTAGCATTGTGTGGTGTT
TTGAACATTGGCCTTGCAATTGGTATTGCTTATGGATTATCAAGTGCATT
CCAACTCTTTTCAACACCCGTCCACAGTGTTCTACCCTTCTTGCTCCTAG
GTATGTTCCACTAcaaatacagtgtgtcccaaaaaaaaagcGGATAAAtc
tttatataaagtaaaatcctcaaactTCAATATCTAAACTGGGCTTAGAA
TAATAGCGCTTCGTTATGCAAACGTCATCATTATTTCATCTcccatttga
ccgaaattcaatcccacaatccttttcgtcttaattcaaaagtcttgaaa
gtcatttattttttatttttaattgagtgtaatttgcgtgtAAGCGTAAT
TAAcgcaaagggtgatgggatagaatttcggtcaaacagaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_91:340519..348072-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073409 ID=TCONS_00073409|Name=TCONS_00073409|organism=Clytia hemisphaerica|type=transcript|length=7554bp|location=Sequence derived from alignment at scaffold_91:340519..348072- (Clytia hemisphaerica)
TGTGAAGTTGATAGATTGATAAAAAATATCAAAAATGGAACAACAGATAT
GAATTGGGATTCCATTTGCCTCAAGTAAGATTCACGTTTATTGATTTCAC
ATTTCCTTTGTCTGAAACTTCTTCTATCTAATTTTCTATATCCAGTTGTC
TCAGAGAGACTTTGTTGGTTACTTTGTAATCGATATGACGCTCTGCTAGA
AAATATCTTGTCATCAATGTTTTTATAGTTTCAATTTCAATGCTTCTCGT
TGTCATAGCAACCATCGTTTTTATTGTCTTTTTTTCAAGCATGACCTTTC
AATAAACCGAAACAATTATTAAAGATATATTTTCTTCTTTTAGCCTTGCA
GGAGCAGGTGGACCAGTGGTGTGTCGACCATCAACAATATTAATGTTATG
GAATTACGATTGCAACATTGTGAAACAGTTGAACCAATCACAAATCCTGG
CCAAAGTCAATGATGATACTGCACTGCAAACGTATGTATCATTTTAAAAT
TATTTCATTATTTACAATGCCAAGTCTTTTTTTTTCATCGGCATGACCTA
ATTTTTCTTTGACATGATCAAGATCAGCGTGATGTGTTATTTGGGCTAAT
TTTCCAGCTGGCACACAACGTTTTTCAACGCTTATCTAAAGTTCACACCG
CTCATACAACGTTAGATGAAAGTTGCGTGCCAGCAGGGTTAATGCTTTGT
TACTGTTATTTTTGTGATGCACCAATTTTGGCGCAATTTTCTTACTTGTA
ATTAATGATGGTTATGTCTTAAATTCACCTACCTTATTGGAACTTATTTT
CGCTGAATTAATTTTAGCATTTTTGGCAGTTTTTCGTCAAAATCGCAAAA
ATACGAGCCTGTGAAATATTTTGAGAGTTAAAAACCCCGAAAATTAATTC
CCGCGAAATACATTTTATCGAAGGAAAATCCCTAGGAAAATGAAAGAAAT
TTGTCCAAAAAAGGGCAAAACTGCAAAAATTCCAGAATAAAAAAAAAACG
CGAAAATTAAATCCTGCGCAAATTAAATCCTGCGCAAATTAGTTCCAATA
AGGTAGTCTTTTCTCTAATAACCCTCATTAAAAAAAATATTTTCAATACC
AGAGAAGTTAATAAAGAAATCTTTAGGGCAACATCGCCCAACGATATGGA
CCATCTCAAGTCAAAACCCCCCAAAATCGCCTAACTTTTTTAAAAGAACT
TTTTTGACTTTAACAAAGGATAAATAAATGAGGTTAACTTATTTTTATTT
GCTACTTTACATGCTAACTCAAAATTTATTCAGGTTCACAANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGATATATAC
ATTATAGAGGTTAAGTGTTGAATTTAAAGAGATATTCTTGGTCAAAGTAG
GGTTAAAAATATGAGGTTAACTTGCACTGAGGTTAACCTAATGGTCTGTA
AAGATAGATCAAAATTGGTATGAAATGTGAGGTTGAAGCAAAAATAAATG
ATTGGGTTTTACTATATAATGATTGGGCAACAAGCTAGGCTAGAAAAATG
AGGTTAATATTTCAAGTAGGGTGTAAAATTTGAGGTTATTTCACAAAAAC
ACCCTAATGTGAGGTTAACAATGATATTTCAGTCTAATTTTGGATATCAG
ACAAACAGTAGCCTATTATCAAAAACAACTAAACATGAAATATTATATTT
TGGTCTAAAAAGTGAGGTTAACTGGTATATTAACTTGAGAGACGCAAGTA
CCTGAGAAAGGGTTTGATTTTAAGCTTTCAGAAATCCTGCATAGAAATGC
AAAGTTGTGTAATAGAAATAGTGGGATCCATTATTCAATGGTTGAGGAAC
AAGGTTAGATAGAAAAAAATGAGGTTAATATCTTAGTTTGGGTACCAAAA
GTGAGGTTATTTGTGAATTGGGCTTATAGGGTTTTTAAATTCTTTGTTGT
ATACTTTAATGACTTATAAATCTGTTTTTGATATCAATACTGAGCTTAAC
TTTTTATCGTAGTATCCCTTAAACGTTTTTCGTTCAGTTGTTGTTTGACA
AAAACAATGAAGTTTGAAGGTATAAACTAAAACATCCTACTTTTTCAGGT
TGTTTAACCTCATTTTAAGAACCTTTTTGGTCTCTTTCATATTTTTTTAG
CTTAGTTACTTTATGAAAACTTTTAAAAAGTAATTTTGTTCCTGTAGCTT
TAATAGAACTATTTAGATCTATTAGAAAATCAAATTTCTCACATTCCTTA
ACATAGAGTTTTAATTTTAACCTCAATTTTTAACCCTACATTAGAGCAAA
GATTGTCAATTTCATAAAAACCCTATCGATCTAAGGTTCTAGTATCATTT
TACTTTTGTCCCATAACTTAATACACATGCTAGCAGAAGATATGGTTAAG
AATGTGAGGTTACATGTTACCATTTTTTTAACCTCATGAATTGCACCTTT
CTTGTGGGAAATCTCTAACCTTTTTTAGACAAGCTTGATATTCGAAGCCT
TTTTGATGACTCCCTAATAATTTTTTCCCCGATAATTCAATAAGCGTCTC
TATATTTTGAGGTTAACAAAAGTCTATAAATTGTCATATTAACCTCAAAT
AACAAACCTTTTTCAAGTTTTTTTTTCATTTTTGGGTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TTTTTTTTTCATTTTTGGGTATAAGCCATCAATTATGACCAACCCTCAAA
ATTTCAACCTTTTTAGATAAAAAATGAAGATTATGTGGCCAATTATGTAA
ATTTTTCCACTTTTTCCTCAAAAAAAATAACTTTTTCTTAGGTGACATTG
ATTTGAGATTGTCCATATGAACGCATTTTATAATCCTCAAGGAAAATTTG
TAGATTATTACCATTGTGATATTTTTTTGGTTCTAGATTAACCGGGAAAA
TCAATTTGGATTTATTGCTTGGTAGTATTGTAAGGTCAAATGGTGACATC
ACTGGAGCAAGTGCAACCAAAATGACTTATTTTCTGAAGAACCAGGAAGT
GTATGTTGAAAGCCAGGGAAAAAATGTAAGACTTCTTTCTGGTGAAAATT
TGAATACATAATTTTTTCATAGGTTACTTAGGGCTTTAAAATCATTTACA
ATACATCTTTCAACTCTTAAAACATTATAAGACTGGGTCACAGTTTACCA
GGTAGCATTGCTGTCAAAAATTTGTAGAGTTGATTTTCTCATAGACTCTC
GCAGATTCTGATCTAATTTACTGCTGACAAGATACCAAATGAGTGTTCTA
TTAGTATGGGCTAATGTAGAAAACATTTGTACTCCCAATGTTGAGGGGGT
CATTTTTGGGAATATGACCCAGTTGGACTTTTTTCTAATTTTTTGGACCA
CCCTGGACTCTTGACCTTACTGGCTTTTTAACCTTCATTTTACTAACCCC
CCATATTTGCCATCACATTTTTCTGACCACCCTGGATTTTTGCACTCAAA
AAACCCGACTATTCTAGAATGAGTGCAGACAAAAATGGCTAAATTTTAAA
AACTTTGATTTTGTGTTTATTTTGCCCTTTATACCCATATTTAGATTAAA
ACATTCAAGAAATACCCAAGAATAGCAATGCTGCAAAATATAAAAGGCTA
AATTTTTCCTTGTATAGGTTGACCAGAAAGGAGAGGATTGGGAGACAGAG
TTTTCTGATGTTTTCATCAAACAAAAGGTCACTGGTGGTTTTGACAAAGT
ATACATTTTTTCTTTTGTCAGGTTAGAATTTATTTCCGTTTTCACTTTAT
CTCAATCTACAGTAAAAGTATAGCCGATACTTGATTCCATTTTTCTGTGC
ATTAATGTCTTTACAGATGTTTTTCATGCTTTTTAAAGTTTCGTAATCCC
CCCCCCTTCAATTCTGTTAAGGCAATTCCTTTACTCAAGTTGAACGTTTG
TTTCCATAATGGTGGAAGTCATTATGTCACTTGACAAAACATGAAAATAA
CCTCTGTTCAACTTTACGATCTTTTCCAAATGTCTGTGGAGTCCGGGTTT
TCAGGCTTTTTTAAAAACATTCAATTTTTCGACGTCACCTAAATTTCAAA
GCAGTAGCGAGAAAAAAATGCATGCATAAAAGTTCTTCTTTCTTCATGAA
ACTCACTAAGAAACCACAGATTTATGTAAAGCCTGAAGGGCTAGATGTCG
TGCTTTAAGTCATGACAGGTAAAAAAAGTGAAGAAGAGAAAGAGTTGCTA
TTGTTTTCGAAAATCTGCAAAGCTTCTGAATAGTCAAGCGCTGAAATCCT
ATACTAATGTCACGTGACCTAGGTAGGATTTCCTACCTAACCACGGCACA
CTTTCCAGACAAAGCACGACATCTAGTCCTTCACGCTTTATATAAATCTG
TGCAAGTATAACGGAGTAAAAGATCTGGTTCTTGATAAGATACTCTCTAG
TAAAGGCACTATTTGAACAGACTGTGGTTTTCATCTCCTAGTTGATGAAT
TTCAATGCCAAATATTTTCTTATTTTTTGACTAAATTTCGATCAAATTTT
TTACTTTCATTTTTTTTTCAGTCAACAAGACGAGAGTGGTGGACAAATTT
CTGACGATTTGAAATTTTTGTTTGTTGGTTATGTTTTGATCATTGCATAC
CTTGGTATCATGTTAGGAAGTTTCTCCAGACTCGACCAAAAGGTTTGTTC
TCATTCATTCTTATTTCATATTCATTGGAAATTTCAGGTTTTTAAAGTTC
TTTAACCCTATTCTTATTCATCGGAATCGGTTTTTAAAGTTCTTTAACCC
TATTCGTTCGGGGGGGGGGGGCTGTTCCTGTTCAGAGGTCAAATTAATGT
TAATAGCTCCTAAAATAATAGAGCTTTTGTCATGAAATTTTCTATAAATT
CCTAACTTTTATTTAGCTTTAATAAAAAATTGACATCTAAAGATGTCTCA
CACCTTGAGCATGATGACATTTCTGACAGTAAAGGGGCACAAAAATTGAC
ACTTTTCCAATGCAATACAAATTTATTTTCTATGTCAAATATATCGTTTA
AACCGTAATTTATTGAATATTTAGGATAAAAATAAGCATTTTAGACTCAG
GGAACTTTTTTAAAGCTTTTGTTAGAAAACAATAGCTATTTGTAAGAACA
AAGGAAATTCTCGGTTTTTGATCACTGTGGGCATGGTGAGTGACGTCATC
AAAAAAATTATTTGTCAAAAGTTACCTTATGTGACAAAGATCTTGTGTGC
CAAGATTTCATCCAAAAAGACCCACTAGATCAAAAGTTAAGGGGTGGTAC
AGGAACACCCCCCTAGTTTTGAACCGCCCCTAAAAGCCTAGTATCAACGA
TAGGTTTAAAGATGTTAACAATTTTATTCATAGATACCCACGTTATGATA
AACTTTTTATTTATTTCTAAAATTATCTACATATATAATGTAACGCATGC
ATCTAACATCGGTCGAACGANAGTCAAGCGCTGAAATCCTATACTAATGT
CACGTGACCTAGGTAGGATTTCCTACCTAACCACGGCACACTTTCCAGAC
AAAGCACGACATCTAGTCCTTCACGCTTTATATAAATCTGTGCAAGTATA
ACGGAGTAAAAGATCTGGTTCTTGATAAGATACTCTCTAGTAAAGGCACT
ATTTGAACAGACTGTGGTTTTCATCTCCTAGTTGATGAATTTCAATGCCA
AATATTTTCTTAATTTTTGACTAAATTGGCTGTCTAAAACATGCTTTTAA
GGTTTTTTACTTTCATTTTTTTTTCAGTCAACAAGACGAGAGTGGTGGAC
AAATTTCTGACGATTTGAAATTTTTGTTTGTTGGTTATGTTTTGATCATT
GCATACCTTGGTATCATGTTAGGAAGTTTCTCCAGACTCGACCAAAAGGT
TTGTTCTCATTCATTCTTATTTCATATTCATTGGAAATTTCAGGTTTTTA
AAGTTCTTTAACCCTATTCTTATTCATCGGAATCGGTTTTTAAAGTTCTT
TAACCCTATTCGTTCGGGGGGGGGGGGCTGTTCCTGTTCAGAGGTCAAAT
TAATGTTAATAGCTCCTAAAATAATAGAGCTTTTGTCATGAAATTTTCTA
TAAATTCCTAACTTTTATTTAGCTTTAATAAAAAATTGACATCTAAAGAT
GTCTCACACCTTGAGCATGATGACATTTCTGACAGTAAAGGGGCACAAAA
ATTGACACTTTTCCAATGCAATACAAATTTATTTTCTATGTCAAATATAT
CGTTTAAACCGTAATTTATTGAATATTTAGGATAAAAATAAGCATTTTAG
ACTCAGGGAACTTTTTTAAAGCTTTTGTTAGAAAACAATAGCTATTTGTA
AGAACAAAGGAAATTCTCGGTTTTTGATCACTGTGGGCATGGTGAGTGAC
GTCATCAAAAAAATTATTTGTCAAAAGTTACCTTATGTGACAAAGATCTT
GTGTGCCAAGATTTCATCCAAAAAGACCCACTAGATCAAAAGTTAAGGGG
TGGTACAGGAACACCCCCCTAGTTTTGAACCGCCCCTAAAAGCCTAGTAT
CAACGATAGGTTTAAAGATGTTAACAATTTTATTCATAGATACCCACGTT
ATGATAAACTTTTTATTTATTTCTAAAATTATCTACATATATAATGTAAC
GCATGCATCTAACATCGGTCGAACGAGAATGGTATTAACTGTTTTGAATA
ATATCAGATGCATCATTATCTACGATTTTTTTTCAATTTACAATTTTCTT
GGCATTGGAAAAAATCTTAAGAAAATACTGTTTCCATGTTGCCGATCTTT
GACATAAGATTCTAATTCACTCGGATGAGATGGAGTTGTAAGCATTGTTA
CTTTAATAATTGGTCATTTGAAGTAATAAAAATGACGCATTCTTTAGAAA
AAGTATTAAAATTGTTTTATTACTAGTTAGAATTTGTAAAAACTCCATTT
CGTCCAAATTCACTCATTCAAATTTCTTTTTTGATAGGTTTGGTTAGCAT
TGTGTGGTGTTTTGAACATTGGCCTTGCAATTGGTATTGCTTATGGATTA
TCAAGTGCATTCCAACTCTTTTCAACACCCGTCCACAGTGTTCTACCCTT
CTTGCTCCTAGGTATGTTCCACTACAAATACAGTGTGTCCCAAAAAAAAA
GCGGATAAATCTTTATATAAAGTAAAATCCTCAAACTTCAATATCTAAAC
TGGGCTTAGAATAATAGCGCTTCGTTATGCAAACGTCATCATTATTTCAT
CTCCCATTTGACCGAAATTCAATCCCACAATCCTTTTCGTCTTAATTCAA
AAGTCTTGAAAGTCATTTATTTTTTATTTTTAATTGAGTGTAATTTGCGT
GTAAGCGTAATTAACGCAAAGGGTGATGGGATAGAATTTCGGTCAAACAG
AAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045554XLOC_045554Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073409-exon-scaffold_91-1575043694:347999..348072TCONS_00073409-exon-scaffold_91-1575043694:347999..348072Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1575043694:347592..347729TCONS_00073409-exon-scaffold_91-1575043694:347592..347729Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1575043694:344848..344986TCONS_00073409-exon-scaffold_91-1575043694:344848..344986Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1575043694:344152..344255TCONS_00073409-exon-scaffold_91-1575043694:344152..344255Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1575043694:343231..343351TCONS_00073409-exon-scaffold_91-1575043694:343231..343351Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1575043694:340519..340935TCONS_00073409-exon-scaffold_91-1575043694:340519..340935Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1510915933:347999..348072TCONS_00073409-exon-scaffold_91-1510915933:347999..348072Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1510915933:347592..347729TCONS_00073409-exon-scaffold_91-1510915933:347592..347729Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1510915933:344848..344986TCONS_00073409-exon-scaffold_91-1510915933:344848..344986Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1510915933:344152..344255TCONS_00073409-exon-scaffold_91-1510915933:344152..344255Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1510915933:343231..343351TCONS_00073409-exon-scaffold_91-1510915933:343231..343351Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1510915933:340519..340935TCONS_00073409-exon-scaffold_91-1510915933:340519..340935Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1491911889:347999..348072TCONS_00073409-exon-scaffold_91-1491911889:347999..348072Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1491911889:347592..347729TCONS_00073409-exon-scaffold_91-1491911889:347592..347729Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1491911889:344848..344986TCONS_00073409-exon-scaffold_91-1491911889:344848..344986Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1491911889:344152..344255TCONS_00073409-exon-scaffold_91-1491911889:344152..344255Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1491911889:343231..343351TCONS_00073409-exon-scaffold_91-1491911889:343231..343351Clytia hemisphaericaexon
TCONS_00073409-exon-scaffold_91-1491911889:340519..340935TCONS_00073409-exon-scaffold_91-1491911889:340519..340935Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_91supercontigscaffold_91:340519..348072 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.26379	2.73084	2.79863	3.34753	19.0995	14.3803	7.09626	8.54012	4.03331	4.85625	7.40961	6.30887	6.62681	7.74991	3.86627	5.53654	12.3641	14.7591	7.61714	8.90312	31.2104	25.0942	5.63932	7.63037	30.2754	22.5235	5.63502	4.21013	1.1048	0.798633
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073409 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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