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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073365 ID=TCONS_00073365|Name=TCONS_00073365|organism=Clytia hemisphaerica|type=transcript|length=1644bp
TTGCAATCTACTTATAAATATTGTGAAAGTAAAAATCACTCTTCATTTCG
ATTTGTTTAATACATGAATATGTCTGCGAAGATAttaaaaagatgttcaa
attAGATTTGTGAGTGTTTCCAGTTTGAAAGTTGATCACTGACCTCACTG
TATTACTAAGTGTGGAATTATCAAACATGTCAGAGGACGATACCACGCAA
TCTTCTGGTGACTTACCAACAATTGAAGTGACCACTGAAGAATATGATAT
TATTGAAGTGTCAGAGCAAGTAGAACTTTCTGAACCAATTGTTATTGAAG
ATGATATAGAAGTTGACGTAGAGGTTATTGAACAAGTTGATTCAAAAGAT
TTTAGCCCTGTTACTGTTGTAATTGCACCTCCTGAGAATGAAATTGATGC
ATCTGACTCTCCTCAGGGAGAGAAAGATGCTCACGAAGCCGAGGAAGAGG
AAGATGttggagaaaaagaaaatgagaaagaagaagaggTTGAAATGCAA
GAGGAAGAAGCTGTAAAAGCGGAGCCTAatattgaagaagaagaagaaga
agaagaaactgaTAACGGGGAAAATGTAAATGATGAAACAACTGGAATCG
ACGATGTGGATATCGATGTGGAGGATGAAGATGATGATCATATCCAACCA
TCTGCACCATCCATCAGTCTATTGGTGGACCATTCAGTGGATACCATCGT
GGAAGATAAAGAAAGTGAAGATGAACAGGAAGAAGTTGCAAAAGAAGGAA
AAACCGAAGACATTGAAGATGGAGAAGACAGAAAAGAGATTACTGTTGCT
GAGGAAACTCCAAAAGAAGAAGAATCTGGCAAAGATTCTCATGAAGATTC
AAAACAACTTGAAGGCTCTGAAAATGTGTCAGATCTTGTTCCAGTCGGAA
TATCTAGTCCATGTCCTTGTGATGAGGACGACAAAAATGTCGAGGAAGTC
GAAGATTCTATAGATGGTGAATGCAGCTATGGCAAAATTCGTCTCTTATT
CTTCCGCGAACCAGAAGACGATATTATGAATGTGAAGGTCTTTCGTGTTG
ATCAAATGCCATCTACTACAGAAGGTGGTTCAAAAGATGTCAGCATCCAT
CTCTGCTTAAAACCAGCTTCCAAGCAACGATATAAAACAAAGATGAAATC
AACATCTAAAGCAAGATTTGACGATACGtatgaatttcgaaaaatcaacA
ATGAAGCAATTGAATCTTCAACATTGAGGATAAGAGCTTATGGTAAATGT
AAGAAGATCATTGGTGAAGCTCATATTCCTTTATCAATGGTCAAAGATTT
TCAATATCAAGAAGTTTGGTATTACTTCTCACCATTTGACAAAAAGAAAT
CCAAGACGAAGAAAAACAGTGAAGCTCCAGCAGTAGGAAAATGGTATTTT
GCAAAGAATGAATTACTTTAGTTATTACCCTATCTAAATCATACAAACAA
GACAACGATCCAACGATTTTGGGGAGGTGTAAAGATCCCACACTGATGGA
TCAGAGTACCTTCAATCATTCTCATACCATTTTGACTTTGGGTCAACCCT
GTCATATATTTTGATATATATTGAAGTAGTGCATTTATTCATCTATAAta
ataaaatactaaaaattcaTACCAGGAAAAGAATTGCCTTAAAA Run BLAST on NCBI protein sequence of TCONS_00073365-protein >TCONS_00073365-protein ID=TCONS_00073365-protein|Name=TCONS_00073365-protein|organism=Clytia hemisphaerica|type=polypeptide|length=414bp
MSEDDTTQSSGDLPTIEVTTEEYDIIEVSEQVELSEPIVIEDDIEVDVEV
IEQVDSKDFSPVTVVIAPPENEIDASDSPQGEKDAHEAEEEEDVGEKENE
KEEEVEMQEEEAVKAEPNIEEEEEEEETDNGENVNDETTGIDDVDIDVED
EDDDHIQPSAPSISLLVDHSVDTIVEDKESEDEQEEVAKEGKTEDIEDGE
DRKEITVAEETPKEEESGKDSHEDSKQLEGSENVSDLVPVGISSPCPCDE
DDKNVEEVEDSIDGECSYGKIRLLFFREPEDDIMNVKVFRVDQMPSTTEG
GSKDVSIHLCLKPASKQRYKTKMKSTSKARFDDTYEFRKINNEAIESSTL
RIRAYGKCKKIIGEAHIPLSMVKDFQYQEVWYYFSPFDKKKSKTKKNSEA
PAVGKWYFAKNELL Run BLAST on NCBI transcript from alignment at scaffold_90:258587..261632- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073365 ID=TCONS_00073365|Name=TCONS_00073365|organism=Clytia hemisphaerica|type=transcript|length=3046bp|location=Sequence derived from alignment at scaffold_90:258587..261632- (Clytia hemisphaerica)
TTGCAATCTACTTATAAATATTGTGAAAGTAAAAATCACTCTTCATTTCG
ATTTGTTTAATACATGAATATGTCTGCGAAGATATTAAAAAGATGTTCAA
ATTAGATTTGTGAGTGTTTCCAGTTTGAAAGTTGATCACTGACCTCACTG
TATTACTAAGTGTGGAATTATCAAACATGTCAGAGGACGATACCACGCAA
TCTTCTGGTGACTTACCAACAATTGAAGTGACCACTGAAGAATATGATAT
TATTGAAGTGTCAGAGCAAGTAGAACTTTCTGAACCAATTGTTATTGAAG
ATGATATAGAAGTTGACGTAGAGGTTATTGAACAAGTTGATTCAAAAGAT
TTTAGCCCTGTTACTGTTGTAATTGCACCTCCTGAGAATGAAATTGATGC
ATCTGACTCTCCTCAGGGAGAGAAAGATGCTCACGAAGCCGAGGAAGAGG
AAGATGTTGGAGAAAAAGAAAATGAGAAAGAAGAAGAGGTTGAAATGCAA
GAGGAAGAAGCTGTAAAAGCGGAGCCTAATATTGAAGAAGAAGAAGAAGA
AGAAGAAACTGATAACGGGGAAAATGTAAATGATGAAACAACTGGAATCG
ACGATGTGGATATCGATGTGGAGGATGAAGATGATGATCATATCCAACCA
TCTGCACCATCCATCAGTCTATTGGTGGACCATTCAGTGGATACCATCGT
GGAAGATAAAGAAAGTGAAGATGAACAGGAAGAAGTTGCAAAAGAAGGAA
AAACCGAAGACATTGAAGATGGAGAAGACAGAAAAGAGATTACTGTTGCT
GAGGAAACTCCAAAAGAAGAAGAATCTGGCAAAGATTCTCATGAAGATTC
AAAACAACTTGAAGGCTCTGAAAATGTGTCAGATCTTGTTCCAGTCGGAA
TATCTAGTCCATGTCCTTGTGATGAGGACGACAAAAATGTCGAGGAAGTC
GAAGATTCTATAGATGGTGAATGCAGCTATGGCAAAATTCGTCTCTTATT
CTTCCGCGAACCAGAAGACGATATTATGAATGTGAAGGTCTTTCGTGTTG
ATCAAATGCCATCTACTACAGAAGGTGGTTCAAAAGATGTCAGCATCCAT
CTCTGCTTAAAACCAGCTTCCAAGCAACGATATAAAACAAAGATGAAATC
AACATCTAAAGCAAGATTTGACGATACGTATGAATTTCGAAAAATCAACA
ATGAAGCAATTGAATCTTCAACATTGAGGATAAGAGCTTATGGTAAATGT
AAGAAGATCATTGGTGAAGCTCATATTCCTTTATCAATGGTCAAAGATTT
TCAATATCAAGAAGTTTGGTATTACTTCTCACCATTTGACAAAAAGGTAT
GTTTGATTTTAACACGTACATCTCTCTCTCTTTCTCTTTCTTTTTCGATG
GCCAAAATACTAAAAACAAGTTAAAACACCCAGTTTCTTAGGGAATTGCA
ACTCAAAATCTCAAAAAGCTACAAACATCCGAAGGCCTAAAAAATCTTGG
ATGTTCTTATAATAAAGGGCTAGATTAGGGCCCCTATCCAATTATTAGCG
AATGTGAAAATTAGTGAAATGAAAGCTGTCTAAACCCACTACATGATTTG
TGGCCTGTGGTTTTGTAAAGGTCTGTGATTTCCACTATGTATAGTAGAGA
TGGTCACGCGGTAATTGTAATCCTCCTATCATTATATAATTTTGCAATAG
TGGATTGATGATAGTNTGAAGATTCAAAACAACTTGAAGGCTCTGAAAAT
GTGTCAGATCTTGTTCCAGACGGAATATCTAGTCCATGTCCTTGTGATGA
GGACGACAAAAATGTCGAGGAAGTCGAAGATTCTATAGATGGTGAATGCA
GCTATGGCAAAATTCGTCTCTTATTCTTCCGCGAACCAGAAGACGATATT
ATGAATGTGAAGGTCTTTCGTGTTGATCAAATGCCATCTACTACAGAAGG
TGGTTCAAAAGATGTCAGCATCCATCTCTGCTTAAAACCAGCTTCCAAGC
AACGATATAAAACAAAGATGAAATCAACATCTAAAGCAAGATTTGACGAT
ACGTATGAATTTCGAAAAATCAACAATGAAGCAATTGAATCTTCAACATT
GAGGATAAGAGCTTATGGTAAATGTAAGAAGATCATTGGTGAAGCTCATA
TTCCTTTATCAATGGTCAAAGATTTTCAATATCAAGAAGTTTGGTATTAC
TTCTCACCATTTGACAAAAAGGTATGTTTGATTTTAACACGTACATCTCT
CTCTCTTTCTCTTTCTTTTTCGATGGCCAAAATACTAAAAACAAGTTAAA
ACACCCAGTTTCTTAGGGAATTGCAACTCAAAATCTCAAAAAGCTACAAA
CATCCGAAGGCCTAAAAAATCTTGGATGTTCTTATAATAAAGGGCTAGAT
TAGGGCCCCTATCCAATTATTAGCGAATGTGAAAATTAGTGAAATGAAAG
CTGTCTAAACCCACTACATGATTTGTGGCCTGTGGTTTTGTAAAGGTCTG
TGATTTCCACTATGTATAGTAGAGATGGTCACGCGGTAATTGTAATCCTC
CTATCATTATATAATTTTGCAATAGTGGATTGATGATAGTATACTTGTAC
GGTTTTCCAACTGTCTGAGACCCATATACAAAGTCATTATTTATGGTTAA
AACTGGATAATCTAGGAGTTAGGGCCTACTTTTCTTTGACATTGTTGAGG
CTTTCATCTATATATTTACTAATCCACCAAAATATTTTCTCGTTTTAGAA
ATCCAAGACGAAGAAAAACAGTGAAGCTCCAGCAGTAGGAAAATGGTATT
TTGCAAAGAATGAATTACTTTAGTTATTACCCTATCTAAATCATACAAAC
AAGACAACGATCCAACGATTTTGGGGAGGTGTAAAGATCCCACACTGATG
GATCAGAGTACCTTCAATCATTCTCATACCATTTTGACTTTGGGTCAACC
CTGTCATATATTTTGATATATATTGAAGTAGTGCATTTATTCATCTATAA
TAATAAAATACTAAAAATTCATACCAGGAAAAGAATTGCCTTAAAA Coding sequence (CDS) from alignment at scaffold_90:258587..261632- >TCONS_00073365 ID=TCONS_00073365|Name=TCONS_00073365|organism=Clytia hemisphaerica|type=CDS|length=2490bp|location=Sequence derived from alignment at scaffold_90:258587..261632- (Clytia hemisphaerica)
AAATCCAAGACGAAGAAAAACAGTGAAGCTCCAGCAGTAGGAAAATGGTA
TTTTGCAAAGAATGAATTACTTTAGATGTCAGAGGACGATACCACGCAAT
CTTCTGGTGACTTACCAACAATTGAAGTGACCACTGAAGAATATGATATT
ATTGAAGTGTCAGAGCAAGTAGAACTTTCTGAACCAATTGTTATTGAAGA
TGATATAGAAGTTGACGTAGAGGTTATTGAACAAGTTGATTCAAAAGATT
TTAGCCCTGTTACTGTTGTAATTGCACCTCCTGAGAATGAAATTGATGCA
TCTGACTCTCCTCAGGGAGAGAAAGATGCTCACGAAGCCGAGGAAGAGGA
AGATGTTGGAGAAAAAGAAAATGAGAAAGAAGAAGAGGTTGAAATGCAAG
AGGAAGAAGCTGTAAAAGCGGAGCCTAATATTGAAGAAGAAGAAGAAGAA
GAAGAAACTGATAACGGGGAAAATGTAAATGATGAAACAACTGGAATCGA
CGATGTGGATATCGATGTGGAGGATGAAGATGATGATCATATCCAACCAT
CTGCACCATCCATCAGTCTATTGGTGGACCATTCAGTGGATACCATCGTG
GAAGATAAAGAAAGTGAAGATGAACAGGAAGAAGTTGCAAAAGAAGGAAA
AACCGAAGACATTGAAGATGGAGAAGACAGAAAAGAGATTACTGTTGCTG
AGGAAACTCCAAAAGAAGAAGAATCTGGCAAAGATTCTCATGAAGATTCA
AAACAACTTGAAGGCTCTGAAAATGTGTCAGATCTTGTTCCAGTCGGAAT
ATCTAGTCCATGTCCTTGTGATGAGGACGACAAAAATGTCGAGGAAGTCG
AAGATTCTATAGATGGTGAATGCAGCTATGGCAAAATTCGTCTCTTATTC
TTCCGCGAACCAGAAGACGATATTATGAATGTGAAGGTCTTTCGTGTTGA
TCAAATGCCATCTACTACAGAAGGTGGTTCAAAAGATGTCAGCATCCATC
TCTGCTTAAAACCAGCTTCCAAGCAACGATATAAAACAAAGATGAAATCA
ACATCTAAAGCAAGATTTGACGATACGTATGAATTTCGAAAAATCAACAA
TGAAGCAATTGAATCTTCAACATTGAGGATAAGAGCTTATGGTAAATGTA
AGAAGATCATTGGTGAAGCTCATATTCCTTTATCAATGGTCAAAGATTTT
CAATATCAAGAAGTTTGGTATTACTTCTCACCATTTGACAAAAAGAAATC
CAAGACGAAGAAAAACAGTGAAGCTCCAGCAGTAGGAAAATGGTATTTTG
CAAAGAATGAATTACTTTAGATGTCAGAGGACGATACCACGCAATCTTCT
GGTGACTTACCAACAATTGAAGTGACCACTGAAGAATATGATATTATTGA
AGTGTCAGAGCAAGTAGAACTTTCTGAACCAATTGTTATTGAAGATGATA
TAGAAGTTGACGTAGAGGTTATTGAACAAGTTGATTCAAAAGATTTTAGC
CCTGTTACTGTTGTAATTGCACCTCCTGAGAATGAAATTGATGCATCTGA
CTCTCCTCAGGGAGAGAAAGATGCTCACGAAGCCGAGGAAGAGGAAGATG
TTGGAGAAAAAGAAAATGAGAAAGAAGAAGAGGTTGAAATGCAAGAGGAA
GAAGCTGTAAAAGCGGAGCCTAATATTGAAGAAGAAGAAGAAGAAGAAGA
AACTGATAACGGGGAAAATGTAAATGATGAAACAACTGGAATCGACGATG
TGGATATCGATGTGGAGGATGAAGATGATGATCATATCCAACCATCTGCA
CCATCCATCAGTCTATTGGTGGACCATTCAGTGGATACCATCGTGGAAGA
TAAAGAAAGTGAAGATGAACAGGAAGAAGTTGCAAAAGAAGGAAAAACCG
AAGACATTGAAGATGGAGAAGACAGAAAAGAGATTACTGTTGCTGAGGAA
ACTCCAAAAGAAGAAGAATCTGGCAAAGATTCTCATGAAGATTCAAAACA
ACTTGAAGGCTCTGAAAATGTGTCAGATCTTGTTCCAGTCGGAATATCTA
GTCCATGTCCTTGTGATGAGGACGACAAAAATGTCGAGGAAGTCGAAGAT
TCTATAGATGGTGAATGCAGCTATGGCAAAATTCGTCTCTTATTCTTCCG
CGAACCAGAAGACGATATTATGAATGTGAAGGTCTTTCGTGTTGATCAAA
TGCCATCTACTACAGAAGGTGGTTCAAAAGATGTCAGCATCCATCTCTGC
TTAAAACCAGCTTCCAAGCAACGATATAAAACAAAGATGAAATCAACATC
TAAAGCAAGATTTGACGATACGTATGAATTTCGAAAAATCAACAATGAAG
CAATTGAATCTTCAACATTGAGGATAAGAGCTTATGGTAAATGTAAGAAG
ATCATTGGTGAAGCTCATATTCCTTTATCAATGGTCAAAGATTTTCAATA
TCAAGAAGTTTGGTATTACTTCTCACCATTTGACAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073365-exon-scaffold_90-1575043694:260287..261632 | TCONS_00073365-exon-scaffold_90-1575043694:260287..261632 | Clytia hemisphaerica | exon |
| TCONS_00073365-exon-scaffold_90-1575043694:258587..258884 | TCONS_00073365-exon-scaffold_90-1575043694:258587..258884 | Clytia hemisphaerica | exon |
| TCONS_00073365-exon-scaffold_90-1510915933:260287..261632 | TCONS_00073365-exon-scaffold_90-1510915933:260287..261632 | Clytia hemisphaerica | exon |
| TCONS_00073365-exon-scaffold_90-1510915933:258587..258884 | TCONS_00073365-exon-scaffold_90-1510915933:258587..258884 | Clytia hemisphaerica | exon |
| TCONS_00073365-exon-scaffold_90-1491911889:260287..261632 | TCONS_00073365-exon-scaffold_90-1491911889:260287..261632 | Clytia hemisphaerica | exon |
| TCONS_00073365-exon-scaffold_90-1491911889:258587..258884 | TCONS_00073365-exon-scaffold_90-1491911889:258587..258884 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_90 | supercontig | scaffold_90:258587..261632 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000008 | C2_dom |
Blast
The following BLAST results are available for this feature:
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