TCONS_00073322 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073322
Unique NameTCONS_00073322
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073322 ID=TCONS_00073322|Name=TCONS_00073322|organism=Clytia hemisphaerica|type=transcript|length=329bp
TTTTCAGCATTTGTACAACGAAAACAAGAAAGAAGAAAAGTTAGCATATA
CACATACCATTACCAAAGAAAAAACTGACGAAATGCATTATGGAATTCAG
TTAGCCGAGTTTTCAAACTTACCTGAGGAAATTATCGAAGTCGCGCGTAC
ACTTGCTACTGAGAATGAGAGTGCTCCACTGCAGgAGACAACAGAAGAAG
GGAATttacaaaaagcaaaaataCGACTTGGATGCACGTTAAAGCAAGCT
GCTAAGCATTCACAGTTAGATACAGATGCATTGAAACAATATCTTGAAGT
ATTGCAAAGAAATTGACTGTTGACGTGCT
Run BLAST on NCBI

protein sequence of TCONS_00073322-protein

>TCONS_00073322-protein ID=TCONS_00073322-protein|Name=TCONS_00073322-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
FQHLYNENKKEEKLAYTHTITKEKTDEMHYGIQLAEFSNLPEEIIEVART
LATENESAPLQETTEEGNLQKAKIRLGCTLKQAAKHSQLDTDALKQYLEV
LQRN
Run BLAST on NCBI

transcript from alignment at scaffold_9:306802..311668-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073322 ID=TCONS_00073322|Name=TCONS_00073322|organism=Clytia hemisphaerica|type=transcript|length=4867bp|location=Sequence derived from alignment at scaffold_9:306802..311668- (Clytia hemisphaerica)
TTTTCAGCATTTGTACAACGAAAACAAGAAAGAAGAAAAGTTAGCATATA
CACATACCATTACCAAAGAAAAAACTGACGAAATGCATTATGGTAGGCAA
AATTCGATTAATTTTTGAACTGTGTCGAAGTTTAAAAGGCGGTTAAACAC
CCCTGTCTCACAGCCCCGTCTCTATTGAAATTCCATTTGGGATAAAAATT
GTATTGTTCCAAGTAGAGCAAAGAAATCCAGTGGAGACGGTTTTGGAGTG
CAATTTTTACATTGAGTTTCAAATTTGGATGAAAATGAAAGTCGATTTCC
TAGTCGAGGCTGAAAACATCTTCCAGTGGGGCGGGGGGTCCCATTAGGTC
TGTAAGAAAGGGGTGTTTAAGTCCTTCATAGCCCGAGGTTGGTTATCACA
TTTCCTAACTTGTTAAAAGATTTTTTAAATAGTTGTCCACTTTAATAGCC
TTGGAAGCTTTCCAGACGTCTCCAGTTTTGTAAGGACTTTCTCGACTTCA
GGTCAATCGAAGACATCTACCAAGACTTTTCAAATTCTTAAAATTTCATC
ATTCGTATTACCTTTGATCCTTTCTTTTCACCTTTACAACATGATTATTC
ATATTTACATTTGATCTCTCGCGTCAATAGGAATTCAGTTAGCCGAGTTT
TCAAACTTACCTGAGGAAATTATCGAAGTCGCGCGTACACTTGCTACTGA
GAATGAGAGTGCTCCACTGCAGGTAACTTGAACATATTTTCTCATTCCGA
AATCTAGCGGCCGTAGATCTTCCAGCTACGGTACGCAAGGTTGTTGGTTC
AATCACTGATCGGATTATACCAAAGAATTCTTACTGAGTACAAAATGATA
CTTGATGCCTCTATACTCGATACTCAGCAGTTAAGGGAAGGGTCAAGGGT
AAGTGGAGCATAATCCAGGGAGAAATAATGCCACCCTTTCCCAAGCTATC
GAAATAGGATCGTTCGGGTCGTCTCCAACTGCGGACGCAGACTTGCTTAC
TTAAAGATATTGGACTTTGTTTGTTTTTTCAGGAGACAACAGAAGAAGGG
AATTTACAAAAAGCAAAAATACGACTTGGATGCACGTTAAAGCAAGCTGC
TAAGCATTCACAGTTAGATACAGATGCATTGAAACAATATCTTGAAGGTT
TGAAAATGAGATTTTTAGAAGCACAGGGTGACCAATGAAGGTGACATCAT
TTGTACGTTCATTTGACATCTTCTTTGGATGTCAGAGACGTTAGATNNNN
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NNNNNNNNNCCAAAGTCTGCGATTCCTCATAAAAAATAGTCAATTTTCAG
GTTTTTTAATGGGTTAAGTTTGTGTGTTCTTCACAGTAGCAGGACCCACG
TCATGAAATTGAAAGTGGGGGGGGGAGGGGCAATGAATATAGAGTCTATG
GAGACGCAACTTAAAATTTTTATTTTGCATAAAAATAGTAAATTTTCAGG
TTTTTTAATGGGTTGAGTTTGTGTATTCTTCAGAGTGTAGTTGCTACGTG
CTAAATATAATTTTCAGTTTCTGCTGACGAGTTTACTTTTGTTTGCCTTC
ACTGATTACTTTTCTCTGTCGCAAATATTTAATCAAAAGTTGGCTTCGAA
TAGCATTTATGCAACAAACGTGACCAAAATCTGTTCAAATTTACAATAAA
TTATGTGTTGCATTAAAAGATTAATATTGCTAAATCAACTATCAGTTTTT
TTACTAGAGAATTTATTTTTCTGTATTGTTATAACACATTGTTAGAGGTA
TAAAAGTGACTTAAATTAATCAAAACCCGATGCTTTAGCATACGAATGAC
CTAGATGTTGAGTCAAAGTTCGAAGATCGAACATTAAAAAGCTAAATTTT
CCGAAAGTAGTGACTGCATACATAGTCACAGCACTATTTGTTCAAAATTC
TAGTCAATTTTTCAAATGTTTAGTATAAGCTTTATAAATGTTTCGATCTT
TTAAGGCACCATTTCCTGGTTTATAGGCCTTACTTATCATTAGACTTGTG
TTATCACCTATACGAATTTGAATACAAAATTTTTAGCTCAGAGATTAAAA
TGATTTTTATTTTTTCCGACTAAATGTATCAATATTTGAACAATTTCTAC
AATTTCAAAATTAATTTTAATAATATTAAGCAATAAATACAAACAAAAAA
AAAAACAAAAAAATTCCCATATTAAATACAAGTGAATACAATTTAAAGTT
ATTCCACATTTTTTTAAATTAAGTAAATTAAATGAACACTAGAACAGCAT
TTTAGCTTGGTGGGCTCATATTTTGCGACTCTGTTGGCAATTCAAAGTTA
TGTACCAATAATTTATTATACTCCACGACTGATTTGACACTTTCGAAAGA
CACAGAGGATCCGATATACCACATATTGTATTTTCCTTGCATCTCCAAGA
TTCTCCATAAGATGCCCCTTGATAAATCTTTGATGTTATACCGAGGGAAA
TATCTCCAAGTCTTCATCACCACTAGATTGATCTTCGTTGCGCCGATATC
ACGTAAAGCCTTCAACAATTTACGTCGCAATCGGAATCGTGAGGGTCGGC
GATCATTCATTTGATATGTGACCGTAGTGCGAATCGGGGAATCATCATTA
CCCGATTTAAATTTCCCCGATTGATAATCGGGGCCTGTGTAATTCCGAAT
AGCAGCATATGAATCACGTTGTCCCCATATCGCACCTTGACGTCTTTTGT
TGATATTATCTACCCAATAATCAATAGGAGATGGTCCTTTTTTTGCACCG
AGTGTGTCAACTAAAGCTGTTGTAAACCAAGTTGGTCTTGTACGAGAGAA
GTAGTACGCTTCATCTTTACGGCAATCCCAGTACCGGAGACTTGTTTTCA
TTTCCGGACTCCAAATTATAAAATCATAGCGATCCCATGTTCGGGGTCCT
TTTTTCCCAACCTTGTTTTTAATAAAGATGTCATTCTCACTTCGTCGAAT
TTTGATTATATTTACGTTGTATTTGATGTTAAGGCCCTCTTTCTCGATAA
TGTTTTTCCAGAGGTTTTGGAAACCGTTTCTCAGCATGTAGAATCCTAAG
AAAAGAAAGTATTGTAACATTTTTATTTCTATTTCAGTATTGCAAAGAAA
TTGACTGTTGACGTGCT

Coding sequence (CDS) from alignment at scaffold_9:306802..311668-

>TCONS_00073322 ID=TCONS_00073322|Name=TCONS_00073322|organism=Clytia hemisphaerica|type=CDS|length=1260bp|location=Sequence derived from alignment at scaffold_9:306802..311668- (Clytia hemisphaerica)
TATTGCAAAGAAATTGAGAGACAACAGAAGAAGGGAATTTACAAAAAGCA
AAAATACGACTTGGATGCACGTTAAAGCAAGCTGCTAAGCATTCACAGTT
AGATACAGATGCATTGAAACAATATCTTGAAGGAATTCAGTTAGCCGAGT
TTTCAAACTTACCTGAGGAAATTATCGAAGTCGCGCGTACACTTGCTACT
GAGAATGAGAGTGCTCCACTGCAGTTTCAGCATTTGTACAACGAAAACAA
GAAAGAAGAAAAGTTAGCATATACACATACCATTACCAAAGAAAAAACTG
ACGAAATGCATTATGTATTGCAAAGAAATTGAGAGACAACAGAAGAAGGG
AATTTACAAAAAGCAAAAATACGACTTGGATGCACGTTAAAGCAAGCTGC
TAAGCATTCACAGTTAGATACAGATGCATTGAAACAATATCTTGAAGGAA
TTCAGTTAGCCGAGTTTTCAAACTTACCTGAGGAAATTATCGAAGTCGCG
CGTACACTTGCTACTGAGAATGAGAGTGCTCCACTGCAGTTTCAGCATTT
GTACAACGAAAACAAGAAAGAAGAAAAGTTAGCATATACACATACCATTA
CCAAAGAAAAAACTGACGAAATGCATTATGTATTGCAAAGAAATTGAGAG
ACAACAGAAGAAGGGAATTTACAAAAAGCAAAAATACGACTTGGATGCAC
GTTAAAGCAAGCTGCTAAGCATTCACAGTTAGATACAGATGCATTGAAAC
AATATCTTGAAGGAATTCAGTTAGCCGAGTTTTCAAACTTACCTGAGGAA
ATTATCGAAGTCGCGCGTACACTTGCTACTGAGAATGAGAGTGCTCCACT
GCAGTTTCAGCATTTGTACAACGAAAACAAGAAAGAAGAAAAGTTAGCAT
ATACACATACCATTACCAAAGAAAAAACTGACGAAATGCATTATGTATTG
CAAAGAAATTGAGAGACAACAGAAGAAGGGAATTTACAAAAAGCAAAAAT
ACGACTTGGATGCACGTTAAAGCAAGCTGCTAAGCATTCACAGTTAGATA
CAGATGCATTGAAACAATATCTTGAAGGAATTCAGTTAGCCGAGTTTTCA
AACTTACCTGAGGAAATTATCGAAGTCGCGCGTACACTTGCTACTGAGAA
TGAGAGTGCTCCACTGCAGTTTCAGCATTTGTACAACGAAAACAAGAAAG
AAGAAAAGTTAGCATATACACATACCATTACCAAAGAAAAAACTGACGAA
ATGCATTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045488XLOC_045488Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073322-exon-scaffold_9-1575043694:311577..311668TCONS_00073322-exon-scaffold_9-1575043694:311577..311668Clytia hemisphaericaexon
TCONS_00073322-exon-scaffold_9-1575043694:310947..311038TCONS_00073322-exon-scaffold_9-1575043694:310947..311038Clytia hemisphaericaexon
TCONS_00073322-exon-scaffold_9-1575043694:310522..310636TCONS_00073322-exon-scaffold_9-1575043694:310522..310636Clytia hemisphaericaexon
TCONS_00073322-exon-scaffold_9-1575043694:306802..306831TCONS_00073322-exon-scaffold_9-1575043694:306802..306831Clytia hemisphaericaexon
TCONS_00073322-exon-scaffold_9-1510915933:311577..311668TCONS_00073322-exon-scaffold_9-1510915933:311577..311668Clytia hemisphaericaexon
TCONS_00073322-exon-scaffold_9-1510915933:310947..311038TCONS_00073322-exon-scaffold_9-1510915933:310947..311038Clytia hemisphaericaexon
TCONS_00073322-exon-scaffold_9-1510915933:310522..310636TCONS_00073322-exon-scaffold_9-1510915933:310522..310636Clytia hemisphaericaexon
TCONS_00073322-exon-scaffold_9-1510915933:306802..306831TCONS_00073322-exon-scaffold_9-1510915933:306802..306831Clytia hemisphaericaexon
TCONS_00073322-exon-scaffold_9-1491911889:311577..311668TCONS_00073322-exon-scaffold_9-1491911889:311577..311668Clytia hemisphaericaexon
TCONS_00073322-exon-scaffold_9-1491911889:310947..311038TCONS_00073322-exon-scaffold_9-1491911889:310947..311038Clytia hemisphaericaexon
TCONS_00073322-exon-scaffold_9-1491911889:310522..310636TCONS_00073322-exon-scaffold_9-1491911889:310522..310636Clytia hemisphaericaexon
TCONS_00073322-exon-scaffold_9-1491911889:306802..306831TCONS_00073322-exon-scaffold_9-1491911889:306802..306831Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073322-proteinTCONS_00073322-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:306802..311668 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.5299	11.5317	9.3726	11.462	3.98683	3.15045	6.84159	11.3867	8.47035	7.09746	5.39136	6.89125	6.29181	7.75925	3.18958	5.7649	7.10188	6.3693	3.45696	7.23492	6.00262	5.0192	9.15224	7.70437	37.1373	33.994	3.24302	2.16315	4.92202	4.34612
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073322 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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