TCONS_00073200 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073200
Unique NameTCONS_00073200
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1187

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073200 ID=TCONS_00073200|Name=TCONS_00073200|organism=Clytia hemisphaerica|type=transcript|length=1187bp
ttttttatcattaatcatgttcatttgtttttatatttttcagtcaaaca
taaagatataaaaaaatgaattttatgagAATTTATTCACGAAGTCAACT
GGCAAGAAACATTTGGAAAGGCAGAGTAAATACTCAAAATTTAGCAGCAG
TTCAAAGATgtcaagaaatttcaaatgagGCACCCAGTAGCACAACACCA
CCTACAACAGTAGCGGCTGGCGAGAAACGAGACGATTCTGTTGGCTTCAT
GTTCGGTTCAATTGTCGGTAACATCAAAAAGAACATTGCTAGACAAATGG
CCAAGAGTTTGGCGTCGAAGCATTTATACGAAGCATGCGCAGATCAAGTA
AATTATGAAGAGTTCTTTGTTGCTTGTGAAATGCCTGACACGTTCCAGTC
TTGGTTTTACATAATGCAGCTTCATGTGTGGATGGTGTTGGTACGTTTAC
GAGCTGAAGGAACTTCCGGTAAAAACCTCGCATACACCATGGTCGAAATT
ATGTGGCAAGATATCGAAGCTAGAATCAAATTACTTGATGTTGTTGACAC
GAGCCAGAAGAAAGAAACCATGGAAGAATTTGGCCAACAATTCTTTGGTC
TCATCGTGGCTTACGACgaaGGCTTATTGGGTCACGACAGAGTATTAGCA
TCTGCTTTATGGAGAAATCTATTCTACAATAAGGCAAACACGGATGCTGA
AAAGTTAGCCTTGATGGTAGAGTATGTTAGGAAACAGATTCAGCATCTTG
AAATGCAATCTTCTGAAGATCTTGTTATGACCGGACGAGTTGATTGGCTA
CCTTTGCACGAAGTAAATGACCAGAAGTAATGAGCTGATGTGGTGATTAT
AAGAGTGGTTTGTGCACAATGCATGTTCCTTTTACCGGGTgccatttgtt
ttgaaattcaaaaagtcttgGTATAATCATTGGTTTTGGAATATTTCTGT
CCTTACATACATAATTGAGAATATTCTAACATAGCCATACTACTTTTAGC
CAATGGAATGCTAATTGGAGTTTGAATTCTGATGTATTTAGTCAATGCAA
AGTATATGATAAACATGGTTGTGGTTGTCCAGTTCGATAGTTTCTGCTTT
ATTCGTGGATCTCTACAGGAGCTTGATCTGTTCTGAACGGATAACCTGCT
GTTTTCGCGAATacattcattattttttcaaaaaaca
Run BLAST on NCBI

protein sequence of TCONS_00073200-protein

>TCONS_00073200-protein ID=TCONS_00073200-protein|Name=TCONS_00073200-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
MNFMRIYSRSQLARNIWKGRVNTQNLAAVQRCQEISNEAPSSTTPPTTVA
AGEKRDDSVGFMFGSIVGNIKKNIARQMAKSLASKHLYEACADQVNYEEF
FVACEMPDTFQSWFYIMQLHVWMVLVRLRAEGTSGKNLAYTMVEIMWQDI
EARIKLLDVVDTSQKKETMEEFGQQFFGLIVAYDEGLLGHDRVLASALWR
NLFYNKANTDAEKLALMVEYVRKQIQHLEMQSSEDLVMTGRVDWLPLHEV
NDQK
Run BLAST on NCBI

transcript from alignment at scaffold_88:170214..175471+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073200 ID=TCONS_00073200|Name=TCONS_00073200|organism=Clytia hemisphaerica|type=transcript|length=5258bp|location=Sequence derived from alignment at scaffold_88:170214..175471+ (Clytia hemisphaerica)
ttttttatcattaatcatgttcatttgtttttatatttttcagtcaaaca
taaagatataaaaaaatgaattttatgagAATTTATTCACGAAGTCAACT
GGCAAGAAACATTTGGAAAGGCAGAGTAAATACTCAAAATTTAGCAGCAG
TTCAAAGATgtcaagaaatttcaaatgagGTTTCATGAATTTTAATGTTT
TGCACTCCCACATATAACATGTGGTCAAAATTTCTCAGTTTTATCTACGA
AATCAAAACGTTGTGTGTTGTTTCAAACCTCTCGCACTgatgaataataa
taataatagcaATGCAAAATTTAGTgtaaaaaaagttagaaagtCCATGT
TTATGATAATCTCTATCCAACTTTAGTATTCCCGCTTTTGTAAAAAACGC
ATGCGTCTGTAGAATTTTGGTTTTAAATCGGAATACACTTTAAACAGAGG
TAacctagctggcacacaacgttcatctaacgttatatggacgttaagAA
CATTAGacaaacgttaaaacaacaaTGTGCCAGCTTGGGAAGGCAGACAG
TTGGCTAGCCATCTAAATTCTATCTCGttattttttacacctttttttat
aagaacaaactatataagaacgtaaggtttcgatggctaaaatgataaga
acacgttaagaatattttaaggcttcgcggactcaaaaaaaccgatttct
taagaaaatagacaaaaatactcaaaaagtggcgaaaataagaacatgtt
aagaacatttataggcttaaaactcaaaaagttaagaacacccgaagTTT
GTTTCTAAAAATGctggacgttcttataaaaaaccgtgtGTTCTCTTTTC
AGGCACCCAGTAGCACAACACCACCTACAACAGTAGCGGCTGGCGAGAAA
CGAGACGATTCTGTTGGCTTCATGTTCGGTTCAATTGTCGGTAACATCAA
AAAGAACATTGCTAGACAAATGGTTTGTTAAGATGTTGATTGAAACCTAA
AATTATCGATTCTAACACATTAGTTTGTATATTACTTTTTTAGTCTGATT
TGTGTTCCAGACATCTCTTTTTTTGCCTTGGAAGGCTCCTTAAAATTATA
GCAAAACTGAATTTCTTtctaaacttttgttttttttgcataatattTTG
TGCAATGGATTGCCTGTATTTTAtattgaattagaaaaaaattattttta
atctcGTTGCAGGCCAAGAGTTTGGCGTCGAAGCATTTATACGAAGCATG
CGCAGATCAAGTAAATTATGAAGAGTTCTTTGTTGGTATGAATCTTAGAA
AtcctattgtttttttttcagaagcaaacgttcgatttgcgttAGGGATC
GCCTCTCTTTTTtccacatgcacgtaaaattttattttagaccTTACGGA
AAATTGTTCGTAattgtcttttgggaatttccccgacattatgtagagtt
tttCCTCCctccaaaaactttttgaacgtaaaGCTTTTTTCATATGTACG
TTAAACTTTACTTAAGACCTTACGTAGTGTTTTATAAACTGGTAgatcca
taaaagtatcgctttttttttacttgattttGGACATTAAAGATCCGGTA
CGATTGCCAAACAAGCCTGTGCTACCATTTAAAAAATGTCCCTTGTTATA
ATGTACAGTTAAGTGTTACAcattattttaaatattttctttcccCCTTT
TTAAGCTTGTGAAATGCCTGACACGTTCCAGTCTTGGTTTTACATAATGC
AGCTTCATGTGTGGTAAGCGCCCAACCCGAACAAATATTGAGTTGTTGTT
CTAAAACACATTATTTTACTttaaggtcccgaataaacgTACCAGCCAAT
TTTTAGAGGCCGTAAAGCCCGCCCTCGTGTTTCTAGTGATATTTCTAGGG
TTTTTATTAATAGGTTTTAATTAATAGGTTTTAAATTGAtaccgtttaaa
tttttcaaaattacaatatcgcgaaattaaatacctgcgaaaaattgcga
aattttcaaaaatgaacgaaaatgaaatttttgaggGATTAGTGATATTT
CCTTACTGTAAAAATGGATAGAAATAGACCCAATACGTTGTGTTTAAAGT
GAAgtcagtcattttctttctttattcccactttttgaaaatgcccaatT
TAGCAAagcgcgaaatttaatacacgcgaaacacgtttccTCGAAAAAtt
taataccaataaggtaacCAACCCATCCCCAGTTTATTCagacatttgaa
aaaatttcggaCCGCGAAATTTCATTTTAGCTACGAAACATCTTCAGATG
ATACACCTAGACTTTTCATAAACAATATTTTCTCCATCAGGATGGTGTTG
GTACGTTTACGAGCTGAAGGAACTTCCGGTAAAAACCTCGCATACACCAT
GGTCGAAATTATGTGGCAAGATATCGAAGCTAGAATCAAATTACTTGATG
TAAGTCGTCTAACTTTGTTtcgaccgtagcatgaaggtagagcatccagc
tacggtgcgcaaggtggTGGGCTCGATTCccagctgggtcataccaaaga
ttcccaaaacaGTACTCGATGCCTCTCTGCTCGATGCTCTGCAACTACAG
AGATGGAACAAAGggagaaaagggagccttcggggtGCCCTCGAGTACGG
TCACAAACTTATTTAACTTTGTTCAAGCTCTACAAAAAAGACTTACTAGA
GATTGGTTTGAAGGTTAATCTGGAACtcgattcatgatattcattacgTA
AAGTTTTGTACGAAAGCAGCCAAAAAAAACCGggtgtttgccactaattt
tgaattcaaagaaaaaaactacaaacagTTATTTTGAGTGCTTCCATATA
AACATTGCTTCACGAATCGCCGTATTTCCAAATGACTCGTCTATTGTAAT
AAGCTAAACAGCTGTGATACAGTGGTAAAAATTATGATGCTCTTTGCTGC
TCGTTATCATATTCAAAGATTCAGAGATCGAAAACAATTAGAGAAAGGAA
GGATAGTCTCCTTTAGTCTTCCACATTTTTCGAATAGTTGTATGTAAAAA
GGCTTGAAGTAAGAACTTCCCAAAGATTTTTTACTTGTGTTGTTGTTTTA
GAGGAGATTGAAAAGTGAAAGGATATGGTTCCTTCACTTCTTGGCGGGAA
GATGGCTTGTAATTTTACTTAACCGATGGCCTTTGCCACTGAGGAAAGCC
CAGTAACCGCCCGCTTCCTTCTTCTCAGATACCCTGATAGCACCCACAGA
GCTATTTTAACCGGTTGTAGATCATCTTTAATCCTGGGTGACAATTTCTC
GGATTGGCcctaaattagaaaaattacaTTACAGGAGACGATAACTTTGA
CACCatagttattttttttctttgttcacaTCACAGGTTGTTGACACGAG
CCAGAAGAAAGAAACCATGGAAGAATTTGGCCAACAATTCTTTGGTCTCA
TCGTGGCTTACGACgaagtatttcttttgtttgaattgatgttttaattg
attaatcTACTCTTCATCTAAGAGAATGCTTTCTAGATAAACAGCTAAAC
ACTAACATCAAAATCTTTGGGAATAAACGATCGTTCGAGCACGAACGGGA
AGCATAACTTTTTGGAACAACAGGgacattcgaattatggaaagcATTTT
AGGAGTGTTTCTTCTTGTTGGGAACCGATAATTAGTTCGAACTattgaaa
gatttgaataatagaagcTCGGATTAGCCAGAACCCACTTTAGTATTCTT
TTCAAGATGCTTCATAACTATTTTGCCCATTGATCGGTCTGGCTAGGTTG
GTTTttcggtcaaaaattgatttaggTTTTCAGcataaagaaattttaaa
ttgctTTATTTGTTGATGTCTTCTTTTAATTTCCAGGGCTTATTGGGTCA
CGACAGAGTATTAGCATCTGCTTTATGGAGGTAAATTATGATATCTGTTC
TGGCTCCTTCATCTTCTCCATAAACCTATTATACTCTTGAAAGAGAAAAT
TAAACCGCCAGTTTTCAACTTTTCGTTATCGAAgtaaaaattagcaaaaa
gcTTTTATCAAAACCGTGTTCGTCCGGTACAGACTATCGAGTTTAAGTAT
CTATGtttttttctgcgacggagacggtaagatTTTggtttgtctagatc
ctgaatGACTGAGGAACAGTAAATCAATAAATTTTACCGTTCCTTCTTCC
CAGGTCAAAATACTCGTACTTTAGGTATGTGGCCTATGTATGCCCTTTAT
AGGTTAGGTTTAGTCTTccttattccaaatcgcttcagtcacccGCCATC
CTGAAAAGTGTCAATAAATAATCTTGCTACTAGCTCCTACCAACAAAAAT
CACGCTTCATTGCCTATTCAACAGGCTAACTGCTTACACGAAGGTGTATT
CAGCGAAAAAAATCCGTAGCCTGTGAACGACGTCTCTAAGTATCATTGTG
ATGTcccattttttctctttcttgcaGAAATCTATTCTACAATAAGGCAA
ACACGGATGCTGAAAAGTTAGCCTTGATGGTAGAGTATGTTAGGAAACAG
GTAAAATTCAAATACTTTCGTTTCACAAGGCTAGAGGAACATTCTAGGCT
TCCTTTACTGTAAGAAAGCTGACGCCAGGTGGTGGATTTTCATTCGTTTT
CTCTTGTTTCAAAGTGGCTGTACCACAGCACAATctaaatttttgtcatt
ttgacgCGTTTGAAAGtttaagaaaacttttggaTAGTTAACCGTAAGTA
CGATAGTGTAGGAATTGAAAGCGACTGTTATTATATAGTGTTGTTTTGGT
TACTTTAGATTCAGCATCTTGAAATGCAATCTTCTGAAGATCTTGTTATG
ACCGGACGAGTTGATTGGCTACCTTTGCACGAAGTAAATGACCAGAAGTA
ATGAGCTGATGTGGTGATTATAAGAGTGGTTTGTGCACAATGCATGTTCC
TTTTACCGGGTgccatttgttttgaaattcaaaaagtcttgGTATAATCA
TTGGTTTTGGAATATTTCTGTCCTTACATACATAATTGAGAATATTCTAA
CATAGCCATACTACTTTTAGCCAATGGAATGCTAATTGGAGTTTGAATTC
TGATGTATTTAGTCAATGCAAAGTATATGATAAACATGGTTGTGGTTGTC
CAGTTCGATAGTTTCTGCTTTATTCGTGGATCTCTACAGGAGCTTGATCT
GTTCTGAACGGATAACCTGCTGTTTTCGCGAATacattcattattttttc
aaaaaaca

Coding sequence (CDS) from alignment at scaffold_88:170214..175471+

>TCONS_00073200 ID=TCONS_00073200|Name=TCONS_00073200|organism=Clytia hemisphaerica|type=CDS|length=6885bp|location=Sequence derived from alignment at scaffold_88:170214..175471+ (Clytia hemisphaerica)
atgaattttatgagAATTTATTCACGAAGTCAACTGGCAAGAAACATTTG
GAAAGGCAGAGTAAATACTCAAAATTTAGCAGCAGTTCAAAGATgtcaag
aaatttcaaatgagGCACCCAGTAGCACAACACCACCTACAACAGTAGCG
GCTGGCGAGAAACGAGACGATTCTGTTGGCTTCATGTTCGGTTCAATTGT
CGGTAACATCAAAAAGAACATTGCTAGACAAATGGCCAAGAGTTTGGCGT
CGAAGCATTTATACGAAGCATGCGCAGATCAAGTAAATTATGAAGAGTTC
TTTGTTGCTTGTGAAATGCCTGACACGTTCCAGTCTTGGTTTTACATAAT
GCAGCTTCATGTGTGGATGGTGTTGGTACGTTTACGAGCTGAAGGAACTT
CCGGTAAAAACCTCGCATACACCATGGTCGAAATTATGTGGCAAGATATC
GAAGCTAGAATCAAATTACTTGATGTTGTTGACACGAGCCAGAAGAAAGA
AACCATGGAAGAATTTGGCCAACAATTCTTTGGTCTCATCGTGGCTTACG
ACgaaGGCTTATTGGGTCACGACAGAGTATTAGCATCTGCTTTATGGAGA
AATCTATTCTACAATAAGGCAAACACGGATGCTGAAAAGTTAGCCTTGAT
GGTAGAGTATGTTAGGAAACAGATTCAGCATCTTGAAATGCAATCTTCTG
AAGATCTTGTTATGACCGGACGAGTTGATTGGCTACCTTTGCACGAAGTA
AATGACCAGAAGTAAatgaattttatgagAATTTATTCACGAAGTCAACT
GGCAAGAAACATTTGGAAAGGCAGAGTAAATACTCAAAATTTAGCAGCAG
TTCAAAGATgtcaagaaatttcaaatgagGCACCCAGTAGCACAACACCA
CCTACAACAGTAGCGGCTGGCGAGAAACGAGACGATTCTGTTGGCTTCAT
GTTCGGTTCAATTGTCGGTAACATCAAAAAGAACATTGCTAGACAAATGG
CCAAGAGTTTGGCGTCGAAGCATTTATACGAAGCATGCGCAGATCAAGTA
AATTATGAAGAGTTCTTTGTTGCTTGTGAAATGCCTGACACGTTCCAGTC
TTGGTTTTACATAATGCAGCTTCATGTGTGGATGGTGTTGGTACGTTTAC
GAGCTGAAGGAACTTCCGGTAAAAACCTCGCATACACCATGGTCGAAATT
ATGTGGCAAGATATCGAAGCTAGAATCAAATTACTTGATGTTGTTGACAC
GAGCCAGAAGAAAGAAACCATGGAAGAATTTGGCCAACAATTCTTTGGTC
TCATCGTGGCTTACGACgaaGGCTTATTGGGTCACGACAGAGTATTAGCA
TCTGCTTTATGGAGAAATCTATTCTACAATAAGGCAAACACGGATGCTGA
AAAGTTAGCCTTGATGGTAGAGTATGTTAGGAAACAGATTCAGCATCTTG
AAATGCAATCTTCTGAAGATCTTGTTATGACCGGACGAGTTGATTGGCTA
CCTTTGCACGAAGTAAATGACCAGAAGTAAatgaattttatgagAATTTA
TTCACGAAGTCAACTGGCAAGAAACATTTGGAAAGGCAGAGTAAATACTC
AAAATTTAGCAGCAGTTCAAAGATgtcaagaaatttcaaatgagGCACCC
AGTAGCACAACACCACCTACAACAGTAGCGGCTGGCGAGAAACGAGACGA
TTCTGTTGGCTTCATGTTCGGTTCAATTGTCGGTAACATCAAAAAGAACA
TTGCTAGACAAATGGCCAAGAGTTTGGCGTCGAAGCATTTATACGAAGCA
TGCGCAGATCAAGTAAATTATGAAGAGTTCTTTGTTGCTTGTGAAATGCC
TGACACGTTCCAGTCTTGGTTTTACATAATGCAGCTTCATGTGTGGATGG
TGTTGGTACGTTTACGAGCTGAAGGAACTTCCGGTAAAAACCTCGCATAC
ACCATGGTCGAAATTATGTGGCAAGATATCGAAGCTAGAATCAAATTACT
TGATGTTGTTGACACGAGCCAGAAGAAAGAAACCATGGAAGAATTTGGCC
AACAATTCTTTGGTCTCATCGTGGCTTACGACgaaGGCTTATTGGGTCAC
GACAGAGTATTAGCATCTGCTTTATGGAGAAATCTATTCTACAATAAGGC
AAACACGGATGCTGAAAAGTTAGCCTTGATGGTAGAGTATGTTAGGAAAC
AGATTCAGCATCTTGAAATGCAATCTTCTGAAGATCTTGTTATGACCGGA
CGAGTTGATTGGCTACCTTTGCACGAAGTAAATGACCAGAAGTAAatgaa
ttttatgagAATTTATTCACGAAGTCAACTGGCAAGAAACATTTGGAAAG
GCAGAGTAAATACTCAAAATTTAGCAGCAGTTCAAAGATgtcaagaaatt
tcaaatgagGCACCCAGTAGCACAACACCACCTACAACAGTAGCGGCTGG
CGAGAAACGAGACGATTCTGTTGGCTTCATGTTCGGTTCAATTGTCGGTA
ACATCAAAAAGAACATTGCTAGACAAATGGCCAAGAGTTTGGCGTCGAAG
CATTTATACGAAGCATGCGCAGATCAAGTAAATTATGAAGAGTTCTTTGT
TGCTTGTGAAATGCCTGACACGTTCCAGTCTTGGTTTTACATAATGCAGC
TTCATGTGTGGATGGTGTTGGTACGTTTACGAGCTGAAGGAACTTCCGGT
AAAAACCTCGCATACACCATGGTCGAAATTATGTGGCAAGATATCGAAGC
TAGAATCAAATTACTTGATGTTGTTGACACGAGCCAGAAGAAAGAAACCA
TGGAAGAATTTGGCCAACAATTCTTTGGTCTCATCGTGGCTTACGACgaa
GGCTTATTGGGTCACGACAGAGTATTAGCATCTGCTTTATGGAGAAATCT
ATTCTACAATAAGGCAAACACGGATGCTGAAAAGTTAGCCTTGATGGTAG
AGTATGTTAGGAAACAGATTCAGCATCTTGAAATGCAATCTTCTGAAGAT
CTTGTTATGACCGGACGAGTTGATTGGCTACCTTTGCACGAAGTAAATGA
CCAGAAGTAAatgaattttatgagAATTTATTCACGAAGTCAACTGGCAA
GAAACATTTGGAAAGGCAGAGTAAATACTCAAAATTTAGCAGCAGTTCAA
AGATgtcaagaaatttcaaatgagGCACCCAGTAGCACAACACCACCTAC
AACAGTAGCGGCTGGCGAGAAACGAGACGATTCTGTTGGCTTCATGTTCG
GTTCAATTGTCGGTAACATCAAAAAGAACATTGCTAGACAAATGGCCAAG
AGTTTGGCGTCGAAGCATTTATACGAAGCATGCGCAGATCAAGTAAATTA
TGAAGAGTTCTTTGTTGCTTGTGAAATGCCTGACACGTTCCAGTCTTGGT
TTTACATAATGCAGCTTCATGTGTGGATGGTGTTGGTACGTTTACGAGCT
GAAGGAACTTCCGGTAAAAACCTCGCATACACCATGGTCGAAATTATGTG
GCAAGATATCGAAGCTAGAATCAAATTACTTGATGTTGTTGACACGAGCC
AGAAGAAAGAAACCATGGAAGAATTTGGCCAACAATTCTTTGGTCTCATC
GTGGCTTACGACgaaGGCTTATTGGGTCACGACAGAGTATTAGCATCTGC
TTTATGGAGAAATCTATTCTACAATAAGGCAAACACGGATGCTGAAAAGT
TAGCCTTGATGGTAGAGTATGTTAGGAAACAGATTCAGCATCTTGAAATG
CAATCTTCTGAAGATCTTGTTATGACCGGACGAGTTGATTGGCTACCTTT
GCACGAAGTAAATGACCAGAAGTAAatgaattttatgagAATTTATTCAC
GAAGTCAACTGGCAAGAAACATTTGGAAAGGCAGAGTAAATACTCAAAAT
TTAGCAGCAGTTCAAAGATgtcaagaaatttcaaatgagGCACCCAGTAG
CACAACACCACCTACAACAGTAGCGGCTGGCGAGAAACGAGACGATTCTG
TTGGCTTCATGTTCGGTTCAATTGTCGGTAACATCAAAAAGAACATTGCT
AGACAAATGGCCAAGAGTTTGGCGTCGAAGCATTTATACGAAGCATGCGC
AGATCAAGTAAATTATGAAGAGTTCTTTGTTGCTTGTGAAATGCCTGACA
CGTTCCAGTCTTGGTTTTACATAATGCAGCTTCATGTGTGGATGGTGTTG
GTACGTTTACGAGCTGAAGGAACTTCCGGTAAAAACCTCGCATACACCAT
GGTCGAAATTATGTGGCAAGATATCGAAGCTAGAATCAAATTACTTGATG
TTGTTGACACGAGCCAGAAGAAAGAAACCATGGAAGAATTTGGCCAACAA
TTCTTTGGTCTCATCGTGGCTTACGACgaaGGCTTATTGGGTCACGACAG
AGTATTAGCATCTGCTTTATGGAGAAATCTATTCTACAATAAGGCAAACA
CGGATGCTGAAAAGTTAGCCTTGATGGTAGAGTATGTTAGGAAACAGATT
CAGCATCTTGAAATGCAATCTTCTGAAGATCTTGTTATGACCGGACGAGT
TGATTGGCTACCTTTGCACGAAGTAAATGACCAGAAGTAAatgaatttta
tgagAATTTATTCACGAAGTCAACTGGCAAGAAACATTTGGAAAGGCAGA
GTAAATACTCAAAATTTAGCAGCAGTTCAAAGATgtcaagaaatttcaaa
tgagGCACCCAGTAGCACAACACCACCTACAACAGTAGCGGCTGGCGAGA
AACGAGACGATTCTGTTGGCTTCATGTTCGGTTCAATTGTCGGTAACATC
AAAAAGAACATTGCTAGACAAATGGCCAAGAGTTTGGCGTCGAAGCATTT
ATACGAAGCATGCGCAGATCAAGTAAATTATGAAGAGTTCTTTGTTGCTT
GTGAAATGCCTGACACGTTCCAGTCTTGGTTTTACATAATGCAGCTTCAT
GTGTGGATGGTGTTGGTACGTTTACGAGCTGAAGGAACTTCCGGTAAAAA
CCTCGCATACACCATGGTCGAAATTATGTGGCAAGATATCGAAGCTAGAA
TCAAATTACTTGATGTTGTTGACACGAGCCAGAAGAAAGAAACCATGGAA
GAATTTGGCCAACAATTCTTTGGTCTCATCGTGGCTTACGACgaaGGCTT
ATTGGGTCACGACAGAGTATTAGCATCTGCTTTATGGAGAAATCTATTCT
ACAATAAGGCAAACACGGATGCTGAAAAGTTAGCCTTGATGGTAGAGTAT
GTTAGGAAACAGATTCAGCATCTTGAAATGCAATCTTCTGAAGATCTTGT
TATGACCGGACGAGTTGATTGGCTACCTTTGCACGAAGTAAATGACCAGA
AGTAAatgaattttatgagAATTTATTCACGAAGTCAACTGGCAAGAAAC
ATTTGGAAAGGCAGAGTAAATACTCAAAATTTAGCAGCAGTTCAAAGATg
tcaagaaatttcaaatgagGCACCCAGTAGCACAACACCACCTACAACAG
TAGCGGCTGGCGAGAAACGAGACGATTCTGTTGGCTTCATGTTCGGTTCA
ATTGTCGGTAACATCAAAAAGAACATTGCTAGACAAATGGCCAAGAGTTT
GGCGTCGAAGCATTTATACGAAGCATGCGCAGATCAAGTAAATTATGAAG
AGTTCTTTGTTGCTTGTGAAATGCCTGACACGTTCCAGTCTTGGTTTTAC
ATAATGCAGCTTCATGTGTGGATGGTGTTGGTACGTTTACGAGCTGAAGG
AACTTCCGGTAAAAACCTCGCATACACCATGGTCGAAATTATGTGGCAAG
ATATCGAAGCTAGAATCAAATTACTTGATGTTGTTGACACGAGCCAGAAG
AAAGAAACCATGGAAGAATTTGGCCAACAATTCTTTGGTCTCATCGTGGC
TTACGACgaaGGCTTATTGGGTCACGACAGAGTATTAGCATCTGCTTTAT
GGAGAAATCTATTCTACAATAAGGCAAACACGGATGCTGAAAAGTTAGCC
TTGATGGTAGAGTATGTTAGGAAACAGATTCAGCATCTTGAAATGCAATC
TTCTGAAGATCTTGTTATGACCGGACGAGTTGATTGGCTACCTTTGCACG
AAGTAAATGACCAGAAGTAAatgaattttatgagAATTTATTCACGAAGT
CAACTGGCAAGAAACATTTGGAAAGGCAGAGTAAATACTCAAAATTTAGC
AGCAGTTCAAAGATgtcaagaaatttcaaatgagGCACCCAGTAGCACAA
CACCACCTACAACAGTAGCGGCTGGCGAGAAACGAGACGATTCTGTTGGC
TTCATGTTCGGTTCAATTGTCGGTAACATCAAAAAGAACATTGCTAGACA
AATGGCCAAGAGTTTGGCGTCGAAGCATTTATACGAAGCATGCGCAGATC
AAGTAAATTATGAAGAGTTCTTTGTTGCTTGTGAAATGCCTGACACGTTC
CAGTCTTGGTTTTACATAATGCAGCTTCATGTGTGGATGGTGTTGGTACG
TTTACGAGCTGAAGGAACTTCCGGTAAAAACCTCGCATACACCATGGTCG
AAATTATGTGGCAAGATATCGAAGCTAGAATCAAATTACTTGATGTTGTT
GACACGAGCCAGAAGAAAGAAACCATGGAAGAATTTGGCCAACAATTCTT
TGGTCTCATCGTGGCTTACGACgaaGGCTTATTGGGTCACGACAGAGTAT
TAGCATCTGCTTTATGGAGAAATCTATTCTACAATAAGGCAAACACGGAT
GCTGAAAAGTTAGCCTTGATGGTAGAGTATGTTAGGAAACAGATTCAGCA
TCTTGAAATGCAATCTTCTGAAGATCTTGTTATGACCGGACGAGTTGATT
GGCTACCTTTGCACGAAGTAAATGACCAGAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045407XLOC_045407Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073200-exon-scaffold_88-1491911889:170214..170392TCONS_00073200-exon-scaffold_88-1491911889:170214..170392Clytia hemisphaericaexon
TCONS_00073200-exon-scaffold_88-1510915933:170214..170392TCONS_00073200-exon-scaffold_88-1510915933:170214..170392Clytia hemisphaericaexon
TCONS_00073200-exon-scaffold_88-1575043694:170214..170392TCONS_00073200-exon-scaffold_88-1575043694:170214..170392Clytia hemisphaericaexon
TCONS_00073200-exon-scaffold_88-1491911889:171066..171185TCONS_00073200-exon-scaffold_88-1491911889:171066..171185Clytia hemisphaericaexon
TCONS_00073200-exon-scaffold_88-1510915933:171066..171185TCONS_00073200-exon-scaffold_88-1510915933:171066..171185Clytia hemisphaericaexon
TCONS_00073200-exon-scaffold_88-1575043694:171066..171185TCONS_00073200-exon-scaffold_88-1575043694:171066..171185Clytia hemisphaericaexon
TCONS_00073200-exon-scaffold_88-1491911889:171426..171498TCONS_00073200-exon-scaffold_88-1491911889:171426..171498Clytia hemisphaericaexon
TCONS_00073200-exon-scaffold_88-1510915933:171426..171498TCONS_00073200-exon-scaffold_88-1510915933:171426..171498Clytia hemisphaericaexon
TCONS_00073200-exon-scaffold_88-1575043694:171426..171498TCONS_00073200-exon-scaffold_88-1575043694:171426..171498Clytia hemisphaericaexon
TCONS_00073200-exon-scaffold_88-1491911889:171919..171976TCONS_00073200-exon-scaffold_88-1491911889:171919..171976Clytia hemisphaericaexon
TCONS_00073200-exon-scaffold_88-1510915933:171919..171976TCONS_00073200-exon-scaffold_88-1510915933:171919..171976Clytia hemisphaericaexon
TCONS_00073200-exon-scaffold_88-1575043694:171919..171976TCONS_00073200-exon-scaffold_88-1575043694:171919..171976Clytia hemisphaericaexon
TCONS_00073200-exon-scaffold_88-1491911889:172554..172662TCONS_00073200-exon-scaffold_88-1491911889:172554..172662Clytia hemisphaericaexon
TCONS_00073200-exon-scaffold_88-1510915933:172554..172662TCONS_00073200-exon-scaffold_88-1510915933:172554..172662Clytia hemisphaericaexon
TCONS_00073200-exon-scaffold_88-1575043694:172554..172662TCONS_00073200-exon-scaffold_88-1575043694:172554..172662Clytia hemisphaericaexon
TCONS_00073200-exon-scaffold_88-1491911889:173600..173680TCONS_00073200-exon-scaffold_88-1491911889:173600..173680Clytia hemisphaericaexon
TCONS_00073200-exon-scaffold_88-1510915933:173600..173680TCONS_00073200-exon-scaffold_88-1510915933:173600..173680Clytia hemisphaericaexon
TCONS_00073200-exon-scaffold_88-1575043694:173600..173680TCONS_00073200-exon-scaffold_88-1575043694:173600..173680Clytia hemisphaericaexon
TCONS_00073200-exon-scaffold_88-1491911889:174100..174143TCONS_00073200-exon-scaffold_88-1491911889:174100..174143Clytia hemisphaericaexon
TCONS_00073200-exon-scaffold_88-1510915933:174100..174143TCONS_00073200-exon-scaffold_88-1510915933:174100..174143Clytia hemisphaericaexon
TCONS_00073200-exon-scaffold_88-1575043694:174100..174143TCONS_00073200-exon-scaffold_88-1575043694:174100..174143Clytia hemisphaericaexon
TCONS_00073200-exon-scaffold_88-1491911889:174691..174763TCONS_00073200-exon-scaffold_88-1491911889:174691..174763Clytia hemisphaericaexon
TCONS_00073200-exon-scaffold_88-1510915933:174691..174763TCONS_00073200-exon-scaffold_88-1510915933:174691..174763Clytia hemisphaericaexon
TCONS_00073200-exon-scaffold_88-1575043694:174691..174763TCONS_00073200-exon-scaffold_88-1575043694:174691..174763Clytia hemisphaericaexon
TCONS_00073200-exon-scaffold_88-1491911889:175022..175471TCONS_00073200-exon-scaffold_88-1491911889:175022..175471Clytia hemisphaericaexon
TCONS_00073200-exon-scaffold_88-1510915933:175022..175471TCONS_00073200-exon-scaffold_88-1510915933:175022..175471Clytia hemisphaericaexon
TCONS_00073200-exon-scaffold_88-1575043694:175022..175471TCONS_00073200-exon-scaffold_88-1575043694:175022..175471Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073200-proteinTCONS_00073200-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_88supercontigscaffold_88:170214..175471 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
29.6736	25.7174	15.115	14.8278	10.1754	7.92473	14.0848	14.3212	19.075	14.54	14.2231	15.3654	12.835	11.4501	11.0203	9.79272	29.3018	29.2239	9.10063	10.4513	26.3753	22.736	36.3108	27.5287	19.9412	20.126	8.95344	5.73321	14.7766	17.6805
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021150Ubiq_cyt_c_chap/UPF0174
Blast
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BLAST of TCONS_00073200 vs. Swiss-Prot (Human)
Match: UQCC1 (Ubiquinol-cytochrome-c reductase complex assembly factor 1 OS=Homo sapiens GN=UQCC1 PE=1 SV=3)

HSP 1 Score: 169.474 bits (428), Expect = 1.500e-48
Identity = 80/172 (46.51%), Postives = 112/172 (65.12%), Query Frame = 3 
Query:  309 LASKHLYEACADQVNYEEFFVACEMPDTFQSWFYIMQLHVWMVLVRLRAEGTSGKNLAYTMVEIMWQDIEARIKLLDVVDTSQKKETMEEFGQQFFGLIVAYDEGLLGHDRVLASALWRNLFYNKANTDAEKLALMVEYVRKQIQHLEMQSSEDLVMTGRVDWLPLHEVNDQ 824
            +A+  +Y +C ++ ++EEFF+ C+MPDTF SWF I  LHVWM LVR++ EG SGK +   +V  MW+D++ R +++ V     KK  M      F+  I+ YDEG+L  D  LA+ALWR  F+N+   D   L L+VEYVRKQIQ+L+  + EDL++TG V W PL E N Q
Sbjct:  115 IAALRMYTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMWEDVQQRGRVMGVNPYILKK-NMILMTNHFYAAILGYDEGILSDDHGLAAALWRT-FFNRKCEDPRHLELLVEYVRKQIQYLDSMNGEDLLLTGEVSWRPLVEKNPQ 284
The following BLAST results are available for this feature:
BLAST of TCONS_00073200 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UQCC11.500e-4846.51Ubiquinol-cytochrome-c reductase complex assembly ... [more]
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