TCONS_00073182 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073182
Unique NameTCONS_00073182
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length758

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073182 ID=TCONS_00073182|Name=TCONS_00073182|organism=Clytia hemisphaerica|type=transcript|length=758bp
gacgattttcgataaatagaagcctttcaagtgctttgacgcaaattcga
ttattttgctactgcaggagcttcgaaagttaaaagcgACATCAAAAAAT
CGACAACCCGGGGTCAAattggaatagacgttaatctTTTTTGAATGTTA
CACACTATGTATATTACTAACAAAAAATACACtacataataaaaataaaa
cgtaaACACAAAAGGGTTTTATATGGTACAATTAGAATTTCCTGGGTCGT
TACCCGTACTGTAATTTTCTACttatattgttatatttttttccctTTAT
AAAATGTTTACATCACAGATTCTGCTCAAGGTTATCTAAGATAACCTTTC
GCGATCGCGAGCCTCGCACGCACCGAAGGAGCAACAACGTCAATTGCGTA
AAAACGCTTGTGACGTCTAGGATAGGCTAGTCGTCACAGGTTGAATTTTA
GAGAAAGTTCATGCGGTAATGGACTCTAAAAGTGAACAATTTTCAATTTC
CATGCAAAGAAATTATTTTacataaataaaaatttctttcaaaaaatcct
ATACATGTATGTGAATGGTCAGAGATTTAAATCAACTCTTTCCAAAAAGA
TATACATTGtgtattttttggaatttaaaaatttcttttgaagttTAATT
ATGTAAAACTAGGCACATCAACTGTCTAGATAATCAAATAATTCAAATGA
AACTTCAGATAGTGAGAGTGTCTTAGCCCTAAAtctccccgggggggggg
gggactag
Run BLAST on NCBI

transcript from alignment at scaffold_87:123153..123910

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073182 ID=TCONS_00073182|Name=TCONS_00073182|organism=Clytia hemisphaerica|type=transcript|length=758bp|location=Sequence derived from alignment at scaffold_87:123153..123910 (Clytia hemisphaerica)
ctagtcccccccccccccggggagaTTTAGGGCTAAGACACTCTCACTAT
CTGAAGTTTCATTTGAATTATTTGATTATCTAGACAGTTGATGTGCCTAG
TTTTACATAATTAaacttcaaaagaaatttttaaattccaaaaaatacaC
AATGTATATCTTTTTGGAAAGAGTTGATTTAAATCTCTGACCATTCACAT
ACATGTATaggattttttgaaagaaatttttatttatgtAAAATAATTTC
TTTGCATGGAAATTGAAAATTGTTCACTTTTAGAGTCCATTACCGCATGA
ACTTTCTCTAAAATTCAACCTGTGACGACTAGCCTATCCTAGACGTCACA
AGCGTTTTTACGCAATTGACGTTGTTGCTCCTTCGGTGCGTGCGAGGCTC
GCGATCGCGAAAGGTTATCTTAGATAACCTTGAGCAGAATCTGTGATGTA
AACATTTTATAAagggaaaaaaatataacaatataaGTAGAAAATTACAG
TACGGGTAACGACCCAGGAAATTCTAATTGTACCATATAAAACCCTTTTG
TGTttacgttttatttttattatgtaGTGTATTTTTTGTTAGTAATATAC
ATAGTGTGTAACATTCAAAAAagattaacgtctattccaatTTGACCCCG
GGTTGTCGATTTTTTGATGTcgcttttaactttcgaagctcctgcagtag
caaaataatcgaatttgcgtcaaagcacttgaaaggcttctatttatcga
aaatcgtc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045394XLOC_045394Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073182-exon-scaffold_87-1491911889:123153..123910TCONS_00073182-exon-scaffold_87-1491911889:123153..123910Clytia hemisphaericaexon
TCONS_00073182-exon-scaffold_87-1510915933:123153..123910TCONS_00073182-exon-scaffold_87-1510915933:123153..123910Clytia hemisphaericaexon
TCONS_00073182-exon-scaffold_87-1575043694:123153..123910TCONS_00073182-exon-scaffold_87-1575043694:123153..123910Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_87supercontigscaffold_87:123153..123910 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0344132	0.315086	0.179592	1.2536	25.327	21.1167	8.49177	7.5978	1.39649	2.56159	0.538885	1.09394	0.397634	0.341536	0	0.119209	0.486413	0.20741	0.144463	0.359423	0.832593	0.295046	0.0860185	0.0761881	0.139144	0.185563	0.150991	0.224729	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073182 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top